Clone Name | bastl46g01 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK065821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043G04, full insert sequence Length = 3034 Score = 190 bits (96), Expect = 3e-45 Identities = 111/116 (95%) Strand = Plus / Plus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgggatgcctatgg 132 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 171 ggagatgaagccgaagagcctcccgttcatcgccttcgagcacaagcgggatgcctatgg 230 Query: 133 cttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcaggcatctaca 188 |||||| || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 231 cttcgcagttcggccccaacacttgcagcgttacaaggagtatgcaggcatctaca 286 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 206 agatccgatagatggaagaatttccttgagaggc 239 ||||||||||||||||||||||| || ||||||| Sbjct: 304 agatccgatagatggaagaattttctggagaggc 337 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 362 caagggccacataagattgaaatatggaagccaattcggtcatccctcggcaacatcgag 421 ||||| ||||| ||||| || |||||||||||||| | ||||||| |||||||| ||| Sbjct: 439 caaggaccacacaagatcgagatatggaagccaatcagaccatccctgggcaacatagag 498 Query: 422 cagat 426 ||||| Sbjct: 499 cagat 503
>ref|XM_475386.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2493 Score = 182 bits (92), Expect = 7e-43 Identities = 107/112 (95%) Strand = Plus / Plus Query: 77 atgaagcccaagagcctcccgttcatcgccttcgagcacaagcgggatgcctatggcttc 136 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 atgaagccgaagagcctcccgttcatcgccttcgagcacaagcgggatgcctatggcttc 60 Query: 137 gctgtgcgcccccaacacttgcagcgttacaaggagtacgcaggcatctaca 188 || || || ||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 61 gcagttcggccccaacacttgcagcgttacaaggagtatgcaggcatctaca 112 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 206 agatccgatagatggaagaatttccttgagaggc 239 ||||||||||||||||||||||| || ||||||| Sbjct: 130 agatccgatagatggaagaattttctggagaggc 163 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Plus Query: 362 caagggccacataagattgaaatatggaagccaattcggtcatccctcggcaacatcgag 421 ||||| ||||| ||||| || |||||||||||||| | ||||||| |||||||| ||| Sbjct: 265 caaggaccacacaagatcgagatatggaagccaatcagaccatccctgggcaacatagag 324 Query: 422 cagat 426 ||||| Sbjct: 325 cagat 329
>gb|AC121361.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009E21, complete sequence Length = 153214 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||| Sbjct: 51290 gggatgcctatggcttcgcagttcggccccaacacttgcagcgttacaaggagtatgcag 51231 Query: 180 gcatctaca 188 ||||||||| Sbjct: 51230 gcatctaca 51222 Score = 89.7 bits (45), Expect = 8e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 51895 ggagatgaagccgaagagcctcccgttcatcgccttcgagcacaagcgg 51847 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 206 agatccgatagatggaagaatttccttgagaggc 239 ||||||||||||||||||||||| || ||||||| Sbjct: 51119 agatccgatagatggaagaattttctggagaggc 51086 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 362 caagggccacataagattgaaatatggaagccaattcggtcatccctcggcaacatcgag 421 ||||| ||||| ||||| || |||||||||||||| | ||||||| |||||||| ||| Sbjct: 50984 caaggaccacacaagatcgagatatggaagccaatcagaccatccctgggcaacatagag 50925 Query: 422 cagat 426 ||||| Sbjct: 50924 cagat 50920
>gb|AC108503.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1387_F08, complete sequence Length = 141535 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||| Sbjct: 5648 gggatgcctatggcttcgcagttcggccccaacacttgcagcgttacaaggagtatgcag 5589 Query: 180 gcatctaca 188 ||||||||| Sbjct: 5588 gcatctaca 5580 Score = 89.7 bits (45), Expect = 8e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 6253 ggagatgaagccgaagagcctcccgttcatcgccttcgagcacaagcgg 6205 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 206 agatccgatagatggaagaatttccttgagaggc 239 ||||||||||||||||||||||| || ||||||| Sbjct: 5477 agatccgatagatggaagaattttctggagaggc 5444 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 362 caagggccacataagattgaaatatggaagccaattcggtcatccctcggcaacatcgag 421 ||||| ||||| ||||| || |||||||||||||| | ||||||| |||||||| ||| Sbjct: 5342 caaggaccacacaagatcgagatatggaagccaatcagaccatccctgggcaacatagag 5283 Query: 422 cagat 426 ||||| Sbjct: 5282 cagat 5278
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 105 bits (53), Expect = 1e-19 Identities = 65/69 (94%) Strand = Plus / Minus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||||||||||||||| || || ||||||||||||||||||||||||||||| |||| Sbjct: 22696091 gggatgcctatggcttcgcagttcggccccaacacttgcagcgttacaaggagtatgcag 22696032 Query: 180 gcatctaca 188 ||||||||| Sbjct: 22696031 gcatctaca 22696023 Score = 89.7 bits (45), Expect = 8e-15 Identities = 48/49 (97%) Strand = Plus / Minus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 22696696 ggagatgaagccgaagagcctcccgttcatcgccttcgagcacaagcgg 22696648 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Minus Query: 206 agatccgatagatggaagaatttccttgagaggc 239 ||||||||||||||||||||||| || ||||||| Sbjct: 22695920 agatccgatagatggaagaattttctggagaggc 22695887 Score = 50.1 bits (25), Expect = 0.007 Identities = 55/65 (84%) Strand = Plus / Minus Query: 362 caagggccacataagattgaaatatggaagccaattcggtcatccctcggcaacatcgag 421 ||||| ||||| ||||| || |||||||||||||| | ||||||| |||||||| ||| Sbjct: 22695785 caaggaccacacaagatcgagatatggaagccaatcagaccatccctgggcaacatagag 22695726 Query: 422 cagat 426 ||||| Sbjct: 22695725 cagat 22695721
>gb|AY022729.1| Oryza sativa microsatellite MRG5054 containing (CCG)X12, closest to marker S964, genomic sequence Length = 236 Score = 89.7 bits (45), Expect = 8e-15 Identities = 48/49 (97%) Strand = Plus / Plus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 162 ggagatgaagccgaagagcctcccgttcatcgccttcgagcacaagcgg 210
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||| | |||||||||||||||||||||| |||||||||||| Sbjct: 35786715 ggagatgaaggcgaagagcctcccgttcatcgcctcggagcacaagcgg 35786667 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||| ||||| ||||||||||| || ||||||||||| || |||| ||||| ||| Sbjct: 35786095 gggatgcatatggattcgctgtgcggccacaacacttgcaacggtacagagagtatgcaa 35786036 Query: 180 gcatctaca 188 |||||||| Sbjct: 35786035 acatctaca 35786027
>dbj|AP003271.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0506B12 Length = 170759 Score = 65.9 bits (33), Expect = 1e-07 Identities = 45/49 (91%) Strand = Plus / Minus Query: 73 ggagatgaagcccaagagcctcccgttcatcgccttcgagcacaagcgg 121 |||||||||| | |||||||||||||||||||||| |||||||||||| Sbjct: 51173 ggagatgaaggcgaagagcctcccgttcatcgcctcggagcacaagcgg 51125 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Minus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||| ||||| ||||||||||| || ||||||||||| || |||| ||||| ||| Sbjct: 50553 gggatgcatatggattcgctgtgcggccacaacacttgcaacggtacagagagtatgcaa 50494 Query: 180 gcatctaca 188 |||||||| Sbjct: 50493 acatctaca 50485
>ref|NM_190478.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2997 Score = 50.1 bits (25), Expect = 0.007 Identities = 58/69 (84%) Strand = Plus / Plus Query: 120 gggatgcctatggcttcgctgtgcgcccccaacacttgcagcgttacaaggagtacgcag 179 ||||||| ||||| ||||||||||| || ||||||||||| || |||| ||||| ||| Sbjct: 488 gggatgcatatggattcgctgtgcggccacaacacttgcaacggtacagagagtatgcaa 547 Query: 180 gcatctaca 188 |||||||| Sbjct: 548 acatctaca 556
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Minus Query: 103 cgccttcgagcacaagcgggatgcct 128 ||||||||||||||||| |||||||| Sbjct: 2724333 cgccttcgagcacaagctggatgcct 2724308
>ref|XM_320082.2| Anopheles gambiae str. PEST ENSANGP00000012260 (ENSANGG00000009771), partial mRNA Length = 4257 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 100 catcgccttcgagcacaagcgg 121 |||||||||||||||||||||| Sbjct: 3993 catcgccttcgagcacaagcgg 4014
>ref|XM_607637.2| PREDICTED: Bos taurus similar to Mediterranean fever protein (LOC529195), mRNA Length = 2547 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 73 ggagatgaagcccaagagcct 93 ||||||||||||||||||||| Sbjct: 519 ggagatgaagcccaagagcct 539
>emb|AL160397.17| Human DNA sequence from clone RP11-83N23 on chromosome 13 Contains the 5' end of the HTR2A gene for 5-hydroxytryptamine (serotonin) receptor 2A and a novel gene, complete sequence Length = 204056 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 gttgaggagaattctgagaat 328 ||||||||||||||||||||| Sbjct: 9475 gttgaggagaattctgagaat 9455
>gb|AF440406.1| Buttiauxella agrestis AmpR and AmpC genes, complete cds Length = 2153 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 436 gcgtgttgagaagagtatttg 456 ||||||||||||||||||||| Sbjct: 2145 gcgtgttgagaagagtatttg 2125
>emb|AL807382.8| Mouse DNA sequence from clone RP23-434B7 on chromosome 4, complete sequence Length = 190179 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 gaggagaattctgagaatggg 331 ||||||||||||||||||||| Sbjct: 76302 gaggagaattctgagaatggg 76282
>ref|XM_550519.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1657 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 catgatgccaaggttgcact 276 |||||||||||||||||||| Sbjct: 611 catgatgccaaggttgcact 630
>ref|XM_958190.1| Neurospora crassa OR74A hypothetical protein (NCU08411.1) partial mRNA Length = 1290 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acaaggagtacgcaggcatc 184 |||||||||||||||||||| Sbjct: 281 acaaggagtacgcaggcatc 300
>ref|XM_329456.1| Neurospora crassa OR74A hypothetical protein (NCU08411.1) partial mRNA Length = 1290 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 acaaggagtacgcaggcatc 184 |||||||||||||||||||| Sbjct: 281 acaaggagtacgcaggcatc 300
>gb|AC110240.8| Mus musculus chromosome 3, clone RP23-113O9, complete sequence Length = 237590 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ttctgaattgttgcatgaga 353 |||||||||||||||||||| Sbjct: 42184 ttctgaattgttgcatgaga 42203
>emb|BX323062.10| Zebrafish DNA sequence from clone DKEYP-38H2 in linkage group 5, complete sequence Length = 199133 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 444 agaagagtatttgtctgctg 463 |||||||||||||||||||| Sbjct: 82494 agaagagtatttgtctgctg 82475
>gb|AC124005.13| Mus musculus chromosome 3, clone RP24-149B7, complete sequence Length = 166406 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 ttctgaattgttgcatgaga 353 |||||||||||||||||||| Sbjct: 131423 ttctgaattgttgcatgaga 131442
>dbj|AK120746.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004K12, full insert sequence Length = 1656 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 catgatgccaaggttgcact 276 |||||||||||||||||||| Sbjct: 610 catgatgccaaggttgcact 629
>dbj|AK058985.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-E06, full insert sequence Length = 1681 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 catgatgccaaggttgcact 276 |||||||||||||||||||| Sbjct: 640 catgatgccaaggttgcact 659
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 ccctcggcaacatcgagcag 424 |||||||||||||||||||| Sbjct: 4735324 ccctcggcaacatcgagcag 4735305
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ctcccgttcatcgccttcga 111 |||||||||||||||||||| Sbjct: 2865626 ctcccgttcatcgccttcga 2865645 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,997,554 Number of Sequences: 3902068 Number of extensions: 2997554 Number of successful extensions: 47766 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47643 Number of HSP's gapped (non-prelim): 123 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)