>ARFG3_MOUSE (Q9D8S3) ADP-ribosylation factor GTPase-activating protein 3 (ARF|
           GAP 3)
          Length = 525

 Score = 32.0 bits (71), Expect = 0.78
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 115 PGEAAPSGMYYHTKRKPSDPVSGLSLP----GAKMVGNWGFGSVTKDWESVNARKFQ 273
           PG+AAP+ +    K+KP+    GL       GA+ + N  F  + K  ++V+ RK Q
Sbjct: 203 PGKAAPAEVSSIIKKKPNQAKKGLGAKKGSLGAQKLTNTSFTEIEKQAQAVDKRKEQ 259

>POLG_TUMVJ (P89509) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3164

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 20/94 (21%), Positives = 37/94 (39%)
 Frame = +1

Query: 160  KPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 339
            +  +P   L    A M+ +WG+  +T +     A   +   F S  ++    Y+A     
Sbjct: 2782 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2841

Query: 340  MIYSSVEQTEQKKSEVLIILDSDNEDESMAAYKH 441
             +Y   E  ++  +  L  +  D ED + A   H
Sbjct: 2842 KLYLDKEPAQEDLTHYLQAIFEDYEDGTEACVYH 2875

>RBS3_FRIAG (O22573) Ribulose bisphosphate carboxylase small chain 3,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 3)
          Length = 179

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 22/73 (30%), Positives = 35/73 (47%)
 Frame = +1

Query: 79  RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVN 258
           RA+P  A+M VAP     S   +   +KP+  +S L   G ++          K W  V 
Sbjct: 16  RAAPAQASM-VAPFVGLKSASAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVG 67

Query: 259 ARKFQFINFLSTL 297
            +KF+ +++L TL
Sbjct: 68  LKKFETLSYLPTL 80

>POLG_TUMVQ (Q02597) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral ge
          Length = 3163

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/94 (21%), Positives = 37/94 (39%)
 Frame = +1

Query: 160  KPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEAN 339
            +  +P   L    A M+ +WG+  +T +     A   +   F S  ++    Y+A     
Sbjct: 2781 RSKEPCHRLEAICAAMIESWGYDKLTHEIRKFYAWMIEQAPFSSLAQEGKAPYIAETALR 2840

Query: 340  MIYSSVEQTEQKKSEVLIILDSDNEDESMAAYKH 441
             +Y   E  ++  ++ L  +  D ED   A   H
Sbjct: 2841 KLYLDKEPAQEDLTQYLQAIFEDYEDGVEACVYH 2874

>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 182

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/75 (26%), Positives = 35/75 (46%)
 Frame = +1

Query: 79  RASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVN 258
           R SP  A M VAP     S   + T RK +  ++ ++  G K+          K W ++ 
Sbjct: 16  RVSPAQATM-VAPFTGLKSTPVFPTTRKTNSDITSITSNGGKV-------QCMKVWPTLG 67

Query: 259 ARKFQFINFLSTLRK 303
            +KF+ +++L  L +
Sbjct: 68  MKKFETLSYLPPLTR 82

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 3/83 (3%)
 Frame = +3

Query: 3    QGDRGATRRFPQSSPPLRPAPKTTVPRFAAVSGH-GRRPRRGGALWHVLPHKKEAF*PRQ 179
            +GDR   R  P +  P RP  +         SGH G R   GG  W           P +
Sbjct: 1047 EGDRQLQRTSPPARTPARPPERKAQIERHLESGHTGPRQSLGG--WQSQERLSGPQSPNR 1104

Query: 180  WPFTSW--CKDGWQLGIWQCYQG 242
             P  SW   K+G  LG W   +G
Sbjct: 1105 HPEKSWGSQKEGPSLGGWPELEG 1127

>YBHC_ECOLI (P46130) Acyl-CoA thioester hydrolase ybgC precursor (EC 3.1.2.-)|
          Length = 427

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 67  KPQYRASPPSAAMDVAPGEAAPSGM-YYHTKRKPSDPVSGLSLPGAKMVGNW 219
           K QY A  P          AAP G+  Y T  KP D   GLSL G     +W
Sbjct: 111 KRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPADW 162

>RBS2_FRIAG (O22572) Ribulose bisphosphate carboxylase small chain 2,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 2)
          Length = 179

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = +1

Query: 85  SPPSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPG-AKMVGNWGFGSVTKDWESVNA 261
           S  + A  VAP +A+    +   K   + PV+  ++ G + +  N G     K W  V  
Sbjct: 9   SSVATAACVAPAQASMVAPFVGLKSASAFPVTQKTVTGLSTLPSNGGRVQCMKVWPIVGL 68

Query: 262 RKFQFINFLSTL 297
           +KF+ +++L TL
Sbjct: 69  KKFETLSYLPTL 80

>NAT1_YEAST (P12945) N-terminal acetyltransferase 1 (EC 2.3.1.88)|
           (Amino-terminal, alpha-amino, acetyltransferase 1)
          Length = 853

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
 Frame = +1

Query: 214 NWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEANMIYSSVEQTE--QKKSEV 387
           NW   +V +D   VN  + Q IN LS   K  +  ++ +E        E +E    K+++
Sbjct: 160 NWTSLAVAQD---VNGERQQAINTLSQFEKLAEGKISDSE------KYEHSECLMYKNDI 210

Query: 388 LIILDSDNEDESMAAYKHL 444
           +    SDN+D+     KHL
Sbjct: 211 MYKAASDNQDKLQNVLKHL 229

>RBS1_BRANA (P05346) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 181

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/69 (27%), Positives = 31/69 (44%)
 Frame = +1

Query: 91  PSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270
           P+ A  VAP     S   +   RK ++ ++ +       V N G  S  K W  V  +KF
Sbjct: 15  PAQATMVAPFTGLKSSSAFPVTRKANNDITSI-------VSNGGRVSCMKVWPPVGKKKF 67

Query: 271 QFINFLSTL 297
           + +++L  L
Sbjct: 68  ETLSYLPDL 76

>GCP60_MOUSE (Q8BMP6) Golgi resident protein GCP60 (Acyl-CoA-binding|
           domain-containing protein 3) (Golgi phosphoprotein 1)
           (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1)
           (PBR- and PKA-associated protein 7) (Peripherial
           benzodiazepine receptor-asso
          Length = 524

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = +1

Query: 64  QKPQYRASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFG 228
           ++P    +PP      APG    SG     +        G +    +M  +WGFG
Sbjct: 24  ERPGAEGAPPQTPPSSAPGNGLGSGASGQQREPGEAAAEGAAEEARRMEQHWGFG 78

>MYSA_DROME (P05661) Myosin heavy chain, muscle|
          Length = 1962

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 19/49 (38%), Positives = 25/49 (51%)
 Frame = +1

Query: 301  KPTQSYVACAEANMIYSSVEQTEQKKSEVLIILDSDNEDESMAAYKHLR 447
            K TQ  VA  E N     +EQT Q+K + L  + +  EDE +   KH R
Sbjct: 1059 KLTQEAVADLERNK--KELEQTIQRKDKELSSITAKLEDEQVVVLKHQR 1105

>LASS4_HUMAN (Q9HA82) LAG1 longevity assurance homolog 4|
          Length = 394

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 20/77 (25%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
 Frame = +1

Query: 235 TKDWESVNARK----FQFINFLSTLRKPTQSYVACAEANMIYSSVEQTEQKKSEVLIILD 402
           T  +ES++ R     + F N L  L +    + +C    M+YS +++ + +K     + +
Sbjct: 287 TTYYESISNRGPFFGYYFFNGLLMLLQLLHVFWSCLILRMLYSFMKKGQMEKDIRSDVEE 346

Query: 403 SDNEDESMAAYKHLRLR 453
           SD+ +E  AA + L+L+
Sbjct: 347 SDSSEEVAAAQEPLQLK 363

>TTLL5_HUMAN (Q6EMB2) Tubulin--tyrosine ligase-like protein 5 (SRC1 and|
            TIF2-associated modulatory protein)
          Length = 1277

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 23/92 (25%), Positives = 40/92 (43%)
 Frame = +1

Query: 127  APSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKP 306
            +PSG  + T+  P  P +  S PG++ +   GF      WE         +   +T   P
Sbjct: 1080 SPSGPTWSTQSDPQAPENHSSSPGSRSLQTGGFA-----WEGEVENN---VYSQATGVVP 1131

Query: 307  TQSYVACAEANMIYSSVEQTEQKKSEVLIILD 402
               Y   A +  +  +++Q EQ+K +   +LD
Sbjct: 1132 QHKYHPTAGSYQLQFALQQLEQQKLQSRQLLD 1163

>EPHB3_CHICK (Q07498) Ephrin type-B receptor 3 (EC 2.7.10.1) (Tyrosine-protein|
           kinase receptor CEK10) (Fragment)
          Length = 988

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 363 LLDRAINHISFSTRHITLSGLTQSRKEIYKLELPSIHTF---PVLGNTAKSPIANHLCT 196
           L  R  +++ F  R + L+GLT+ R  I K+     +TF    V G ++KSP   H  +
Sbjct: 358 LCSRCDDNVEFVPRQLGLTGLTERRIYISKVMAHPQYTFEIQAVNGISSKSPYPPHFAS 416

>PDZK3_RAT (Q9QZR8) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Plakophilin-related armadillo repeat
            protein-interacting PDZ protein)
          Length = 2766

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 121  EAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNW 219
            E +PS MY + +   SDP S    PGA    NW
Sbjct: 1466 EPSPSSMYGNAEDSSSDPESLAEDPGAAARNNW 1498

>RBS2_BRANA (P27985) Ribulose bisphosphate carboxylase small chain F1,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit F1)
          Length = 181

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +1

Query: 91  PSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKF 270
           P+ A  VAP     S   +   RK ++ ++ ++  G ++       S  K W  V  +KF
Sbjct: 15  PAQATMVAPFTGLKSSAAFPVTRKANNDITSIASNGGRV-------SCMKVWPPVGKKKF 67

Query: 271 QFINFLSTL 297
           + +++L  L
Sbjct: 68  ETLSYLPDL 76

>RBS1_FRIAG (O24634) Ribulose bisphosphate carboxylase small chain 1/4,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit 1/4)
          Length = 179

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 21/72 (29%), Positives = 34/72 (47%)
 Frame = +1

Query: 82  ASPPSAAMDVAPGEAAPSGMYYHTKRKPSDPVSGLSLPGAKMVGNWGFGSVTKDWESVNA 261
           A+P  A+M VAP     S   +   +KP+  +S L   G ++          K W  V  
Sbjct: 17  AAPAQASM-VAPFVGLKSTSAFPVTQKPATGLSTLPSNGGRV-------QCMKVWPIVGL 68

Query: 262 RKFQFINFLSTL 297
           +KF+ +++L TL
Sbjct: 69  KKFETLSYLPTL 80

>POLG_PVMA (Q85197) Genome polyprotein [Contains: P1 proteinase (N-terminal|
            protein); Helper component proteinase (EC 3.4.22.45)
            (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
            inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
            (6K2); Viral gen
          Length = 3059

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 18/89 (20%), Positives = 36/89 (40%)
 Frame = +1

Query: 169  DPVSGLSLPGAKMVGNWGFGSVTKDWESVNARKFQFINFLSTLRKPTQSYVACAEANMIY 348
            +P+  L    A MV +WG+  +T +     A   +   + +        Y+A +    +Y
Sbjct: 2700 EPIHRLEAICASMVESWGYPELTHEIRRFYAWVLEQSPYNALATTGLAPYIAESALKTLY 2759

Query: 349  SSVEQTEQKKSEVLIILDSDNEDESMAAY 435
            ++V  T  +  +  I  D   ++E    Y
Sbjct: 2760 TNVHPTSTELEKYSIQFDEQMDEEDDMVY 2788


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.311    0.126    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,629,069
Number of Sequences: 219361
Number of extensions: 1429995
Number of successful extensions: 3732
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3728
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)