>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c) (p105)
          Length = 900

 Score = 65.1 bits (157), Expect = 7e-11
 Identities = 30/59 (50%), Positives = 38/59 (64%)
 Frame = +3

Query: 258 EAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDWL 434
           E  +   D   NRYL     DD DT++ RV++  KDKR +EM  T DQM+NAMKINDW+
Sbjct: 22  EVNEVQNDDVNNRYLQSGSEDDDDTDTKRVVKPAKDKRFEEMTYTVDQMKNAMKINDWV 80

>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 935

 Score = 58.9 bits (141), Expect = 5e-09
 Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 3/67 (4%)
 Frame = +3

Query: 243 DSEKSEAGDGGRDVS-KNRYLHREDSDDSDTES--HRVIRSLKDKRNDEMKATADQMRNA 413
           D E S+      D + K++YL   ++DDSD +    RV++S KDKR DEM +T DQ++NA
Sbjct: 23  DDEPSDTEPAPTDPNGKSKYLAGGNADDSDDDDGQKRVVKSAKDKRFDEMASTVDQIKNA 82

Query: 414 MKINDWL 434
           +KINDW+
Sbjct: 83  IKINDWV 89

>IF38_SCHPO (O14164) Probable eukaryotic translation initiation factor 3 93 kDa|
           subunit (eIF3 p93)
          Length = 918

 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +3

Query: 249 EKSEAGDGGRDVSKNRYLHREDSDDS--DTESHRVIRSLKDKRNDEMKATADQMRNAMKI 422
           EK EA   G      ++L  E S++S  + E  RV++S KDKR +E  +  + ++NAM  
Sbjct: 142 EKEEAKPAGL-----KFLRGESSEESSDEEEGRRVVKSAKDKRYEEFISCMETIKNAMSS 196

Query: 423 NDWL 434
           N+W+
Sbjct: 197 NNWI 200

>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 913

 Score = 38.1 bits (87), Expect = 0.009
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
 Frame = +3

Query: 243 DSEKSEAGDG------GRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 404
           +SE S +G+       G +  K   L  ED +D+     RV+RS KDKR +E+      +
Sbjct: 12  ESESSLSGEELVTKPVGGNYGKQPLLLSEDEEDTK----RVVRSAKDKRFEELTNLIRTI 67

Query: 405 RNAMKIND 428
           RNAMKI D
Sbjct: 68  RNAMKIRD 75

>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit|
           (eIF3 p93) (Nuclear transport protein NIP1)
          Length = 812

 Score = 35.4 bits (80), Expect = 0.061
 Identities = 17/63 (26%), Positives = 31/63 (49%)
 Frame = +3

Query: 246 SEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKIN 425
           SE  + G G     K+      D +  + +  +V++S K+K  DEM+   +++  A   +
Sbjct: 78  SEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLLDEMQDVYNKISQAENSD 137

Query: 426 DWL 434
           DWL
Sbjct: 138 DWL 140

>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 32.7 bits (73), Expect = 0.39
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 243 DSEKSEAGDGGRDVSKNRYLHREDSDD----SDTESHRVIRSLKDKRNDEMKATADQMRN 410
           DS+ S + D   D   N+     D  D     + +  RV+R+ KDK+ DE+K    Q R+
Sbjct: 12  DSDTSSSEDEVEDQKVNKSAKFRDDLDFMAGPEEDEKRVVRAQKDKKFDELKGIIKQNRD 71

Query: 411 AMKIND 428
           A    D
Sbjct: 72  AKSNKD 77

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 32.0 bits (71), Expect = 0.67
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
 Frame = -3

Query: 270 HHQLLIFHYRSLVL-----TQSRPPPPQSHCLPVPKN 175
           HHQLL+   +  +      + S+ PPP  HC+P+P +
Sbjct: 319 HHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>GSBN_DROME (P09083) Protein gooseberry-neuro (Protein gooseberry proximal)|
           (BSH4)
          Length = 449

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +3

Query: 267 DGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQM 404
           DG +D + N  L   DSD SDTES   I   + +R      TA+Q+
Sbjct: 149 DGRKDYTINGILGGRDSDISDTESEPGIPLKRKQRRSRTTFTAEQL 194

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 22/81 (27%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
 Frame = -3

Query: 381 SHHCACPSTSESHDGSQYQSRHCP----------LYANSGSWTHHD-PHHQLLIFHYRSL 235
           SH  + PST+ + D    Q  H P              SG W     P     +F    L
Sbjct: 8   SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQRQFPVLTTTVFFSLFL 67

Query: 234 VLTQSRPPPPQSHCLPVPKNE 172
                 P PPQ H  P P  +
Sbjct: 68  SFPPHPPRPPQDHHRPTPARD 88

>ZN37A_HUMAN (P17032) Zinc finger protein 37A (Zinc finger protein KOX21)|
          Length = 561

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
 Frame = -3

Query: 288 WTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP-------KNEMPWLLFVCFPS 139
           W H DP  + L   YR ++L          +C+P P       K E PW+L   FPS
Sbjct: 22  WQHLDPAQRTL---YRDVMLENYSHLVSVGYCIPKPEVILKLEKGEEPWILEEKFPS 75

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
 Frame = -3

Query: 306 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 181
           Y   G W HH           P H L   H+  ++  Q +P PPQ   +PVP
Sbjct: 39  YEPMGGWLHHQIIPVLSQQHSPSHSLPPQHHIPIMAAQ-QPAPPQQPVMPVP 89

>PHC3_HUMAN (Q8NDX5) Polyhomeotic-like protein 3 (hPH3) (Homolog of|
           polyhomeotic 3) (Early development regulatory protein 3)
          Length = 983

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = -3

Query: 384 SSHHCACPST-SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQS-RPP 211
           S H    P++ S     S  + +  PL++     +HH    Q      + + L  S + P
Sbjct: 287 SIHQLIAPASYSPIQPHSLIKHQQIPLHSPPSKVSHHQLILQQQQQQIQPITLQNSTQDP 346

Query: 210 PPQSHCLPVPKNEMP 166
           PP  HC+P+  + +P
Sbjct: 347 PPSQHCIPLQNHGLP 361

>IWS1_MOUSE (Q8C1D8) IWS1-like protein|
          Length = 766

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 17/61 (27%), Positives = 24/61 (39%)
 Frame = +3

Query: 243 DSEKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMKI 422
           DSE  E  +     S++  LHR    DSD+E H       D  N+ +        N   +
Sbjct: 68  DSENDEPSNANASDSESEELHRPKDSDSDSEEH-AESPASDSENEPVNQHGSDSENEELL 126

Query: 423 N 425
           N
Sbjct: 127 N 127

>TSSC1_MACFA (Q4R571) Protein TSSC1|
          Length = 387

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDW 431
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDW 355

>TSSC1_HUMAN (Q53HC9) Protein TSSC1 (Tumor-suppressing subchromosomal|
           transferable fragment candidate gene 1 protein)
           (Tumor-suppressing STF cDNA 1 protein)
          Length = 387

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDW 431
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW
Sbjct: 305 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDW 355

>TSSC1_PONPY (Q5RE10) Protein TSSC1|
          Length = 414

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 282 VSKNRYLHREDSDD-SDTESHRVIRSLKDKRNDEMKATADQMRNAMKINDW 431
           +S   + H  D DD SD E HR     K+   D + AT ++  +++   DW
Sbjct: 332 ISSEPFGHLVDDDDISDQEDHRSEEKSKEPLQDNVIATYEEHEDSVYAVDW 382

>STP2_CANFA (O77645) Nuclear transition protein 2 (TP-2) (TP2)|
          Length = 129

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 384 SSHHCACP-STSESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPP 208
           SSH   C  S S+S   SQ  + H   +++SG  +   PH  L   H +    +   PP 
Sbjct: 32  SSHCQTCSQSCSQSRSSSQSPTGH---HSSSGHQSQ-SPHPTLPPRHQKHTRHSHHCPPR 87

Query: 207 PQSHCLPVPKN 175
           P +H    PKN
Sbjct: 88  PTTHSCSYPKN 98

>SLOU_DROME (P22807) Homeobox protein slou (S59/2) (Protein slouch) (Homeobox|
           protein NK-1)
          Length = 659

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -3

Query: 333 QYQSRHCPLYANSGSWTHHDPH-----HQLLIFHYRSLVLTQSRPPPPQSHCLPVP 181
           Q+Q    P + +S    H  PH     H   +FH R+   + + PP P +  L  P
Sbjct: 206 QHQHHQHPAHPHSHQHPHPHPHPHPHPHPSAVFHLRAPSSSSTAPPSPATSPLSPP 261

>CASB_BOVIN (P02666) Beta-casein precursor|
          Length = 224

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = -3

Query: 354 SESHDGSQYQSRHCPLYANSGSWTH--HDPHHQLLIFHYRSLV-LTQSRPPPPQSHCLPV 184
           S+S   +  ++ H PL     SW H  H P    ++F  +S++ L+QS+  P     +P 
Sbjct: 137 SQSLTLTDVENLHLPLPLLQ-SWMHQPHQPLPPTVMFPPQSVLSLSQSKVLPVPQKAVPY 195

Query: 183 PKNEMPWLLFVCF 145
           P+ +MP   F+ +
Sbjct: 196 PQRDMPIQAFLLY 208

>RRP3_ASPFU (Q4WJE9) ATP-dependent rRNA helicase rrp3 (EC 3.6.1.-)|
          Length = 472

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = +3

Query: 276 RDVSKNRYLHR---EDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 419
           RDV K +  H      SD   T SH+ +    D    + +ATA + R A K
Sbjct: 2   RDVKKRKIAHEAPEHGSDTESTSSHKSVAQQDDPLETQDEATATESRPAPK 52

>Y564_TREPA (O83575) Hypothetical protein TP0564|
          Length = 678

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 8/73 (10%)
 Frame = -3

Query: 381 SHHCACPSTSESHDGSQYQSRHCPL-------YANSGSWTHHDPHHQLLI-FHYRSLVLT 226
           +H   CP            S H P+         +   W H DP H L I  H  ++ + 
Sbjct: 125 AHRTVCPPWLLQAVYQHLTSHHVPIRYRDFDAILHRLGWLHEDPRHALYIKEHIPAVRME 184

Query: 225 QSRPPPPQSHCLP 187
            S  PP   H LP
Sbjct: 185 NSLYPPGALHTLP 197

>AMEL_CAVPO (Q9Z0K9) Amelogenin precursor|
          Length = 226

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
 Frame = -3

Query: 306 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 181
           Y + G W HH           P H  L  H+   V    +P  PQ   +PVP
Sbjct: 69  YESMGGWVHHQVIPVLSQQHPPSHTTLPPHHHIPVGPAQQPVVPQQPLMPVP 120

>IRBP_HUMAN (P10745) Interphotoreceptor retinoid-binding protein precursor|
           (IRBP) (Interstitial retinol-binding protein)
          Length = 1247

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/41 (34%), Positives = 25/41 (60%)
 Frame = -3

Query: 267 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 145
           H+LL+FH    ++ +  PPPP +  +P P+ E+ +L+   F
Sbjct: 697 HRLLVFHSPGELVVEEAPPPPPA--VPSPE-ELTYLIEALF 734

>SSRP_MYCLE (O32881) SsrA-binding protein|
          Length = 160

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -3

Query: 327 QSRHCPLYANSGSWTHHDP-HHQLLIFHYRSL 235
           ++ H P Y + GSWT+HDP  ++ L+ H R +
Sbjct: 64  RNMHIPEYQH-GSWTNHDPRRNRKLLLHRRQI 94

>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
          Length = 480

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = -3

Query: 300 NSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMP 166
           NS    HH  HH     H+      Q  PPPPQ    P P  + P
Sbjct: 41  NSHHPQHHHHHHH---HHHPPPPAPQPPPPPPQQQQQPPPAPQPP 82

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
 Frame = -3

Query: 384 SSHHCACPSTSESHDGSQYQSRHCPLYANSG-----SWTHHDPHHQLLIFHYRSLVLTQS 220
           SS      S S S D    ++   P     G        HH  HHQ +        + Q 
Sbjct: 699 SSSESESSSESSSSDSEDSETEMAPKSKKKGHPGREQKKHHHHHHQQM--QQAPAPVPQQ 756

Query: 219 RPPPPQSHCLPVPKNE 172
            PPPPQ    P P  +
Sbjct: 757 PPPPPQQPPPPPPPQQ 772

>AMELX_RAT (P63278) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
 Frame = -3

Query: 306 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 181
           Y   G W HH           P H L   H+  +V  Q +P  PQ   +PVP
Sbjct: 69  YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119

>AMELX_MOUSE (P63277) Amelogenin, X isoform precursor (Leucine-rich amelogenin|
           peptide) (LRAP)
          Length = 210

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 10/52 (19%)
 Frame = -3

Query: 306 YANSGSWTHHD----------PHHQLLIFHYRSLVLTQSRPPPPQSHCLPVP 181
           Y   G W HH           P H L   H+  +V  Q +P  PQ   +PVP
Sbjct: 69  YEPMGGWLHHQIIPVLSQQHPPSHTLQPHHHLPVVPAQ-QPVAPQQPMMPVP 119

>ADF1_CANAL (P46589) Adherence factor (Adhesion and aggregation mediating|
           surface antigen)
          Length = 612

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = -3

Query: 354 SESHDGSQYQSRHCPLYANSGSWTHHDPHHQLLIFHYRSLVLTQSRPPPP 205
           S +  G+ +      L++N     HH  H Q  + H+       S PPPP
Sbjct: 537 SSALGGTSFSQEQHSLHSNQ----HHHNHQQHPLIHHHQYQQQSSLPPPP 582

>DBP10_ASHGO (Q757U8) ATP-dependent RNA helicase DBP10 (EC 3.6.1.-)|
          Length = 960

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 249 EKSEAGDGGRDVSKNRYLHREDSDDSDTESHRVIRSLKDKRNDEMKATADQMRNAMK 419
           E S+ G+   D++ N  L  EDSDDS ++S   ++ + +  +DE K  A Q+    K
Sbjct: 13  EHSDEGEDF-DIAGNIALDSEDSDDSVSDSDNEVQDIIEFSDDE-KQNAPQVSKTAK 67

>IRBP_BOVIN (P12661) Interphotoreceptor retinoid-binding protein precursor|
           (IRBP) (Interstitial retinol-binding protein) (7S
           protein)
          Length = 1286

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 267 HQLLIFHYRSLVLTQSRPPPPQSHCLPVPKNEMPWLLFVCF 145
           H+LL+FH    ++ +  PPPP    +P P+ E+ +L+   F
Sbjct: 695 HRLLVFHSPGEMVAEEAPPPPP--VVPSPE-ELSYLIEALF 732


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,222,164
Number of Sequences: 219361
Number of extensions: 842752
Number of successful extensions: 3763
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 3369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3740
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)