ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46f04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SESN3_HUMAN (P58005) Sestrin-3 29 5.9
2Y2081_MYCTU (Q10689) Hypothetical protein Rv2081c/MT2143 29 5.9
3SESN3_MOUSE (Q9CYP7) Sestrin-3 28 7.7
4CJ095_HUMAN (Q9H7T3) Protein C10orf95 28 7.7
5RP54_AZOCA (P33984) RNA polymerase sigma-54 factor 28 7.7
6FTHS_SHEON (Q8EJA7) Formate--tetrahydrofolate ligase (EC 6.3.4.3... 28 7.7

>SESN3_HUMAN (P58005) Sestrin-3|
          Length = 492

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 409 ENKRTPALEPLARGPSAILPEERLGSGSEV 320
           ++KR    +PL RGPSA +PE+ +   + V
Sbjct: 26  KDKRIRVSQPLTRGPSAFIPEKEVVQANTV 55



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>Y2081_MYCTU (Q10689) Hypothetical protein Rv2081c/MT2143|
          Length = 146

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +2

Query: 221 GDYVAAIASAVP-HIFHPSAFAEVAQGSPTQAYADLTAAAEAFLREDGGGAASEGFQC 391
           G  V   A A P  +   SA  + A  S T A A L  AA   LRE GG     G  C
Sbjct: 40  GSAVVPAAVAGPLFVGRVSATIKAAAPSTTAAIATLATAANGQLRERGGAGGWVGVHC 97



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>SESN3_MOUSE (Q9CYP7) Sestrin-3|
          Length = 492

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -1

Query: 409 ENKRTPALEPLARGPSAILPEERL 338
           ++KR    +PL RGPSA +PE+ +
Sbjct: 26  KDKRIRVSQPLTRGPSAFIPEKEV 49



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>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
 Frame = +3

Query: 318 PTSLPLPRRSSG-------RMAEGPRARGSSAGVRLFSPRRWPR 428
           P   P PRR  G       R   GP    +S   R   PRRWPR
Sbjct: 110 PPRHPRPRRPGGPALRPTPRPCAGPAPPPASRDCRCRRPRRWPR 153



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>RP54_AZOCA (P33984) RNA polymerase sigma-54 factor|
          Length = 514

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 352 PEERLGSGSEVGVSLRWGALGN 287
           P ER+G+GS  G S+ WG+ G+
Sbjct: 112 PAERIGAGSGSGSSIEWGSGGD 133



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>FTHS_SHEON (Q8EJA7) Formate--tetrahydrofolate ligase (EC 6.3.4.3)|
           (Formyltetrahydrofolate synthetase) (FHS) (FTHFS)
          Length = 570

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 245 SAVPHIFHPSAFAEVAQGSPTQAYADLTAAAEAFLREDGGGAASEGFQCRC 397
           +  P + H   FA +A G+ +    D+      F+  +GG  +  GF+  C
Sbjct: 274 NGAPCLIHAGPFANIAHGNSSVIADDIALKLADFVVTEGGFGSDMGFEKFC 324


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,271,875
Number of Sequences: 219361
Number of extensions: 367011
Number of successful extensions: 1504
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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