>PALI_MAGGR (Q51MB1) pH-response regulator protein palI/RIM9|
          Length = 736

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +2

Query: 173 PALARGSVGPRSRGGIGPDPPGSG 244
           P  +RG  GP  RGG GP P G G
Sbjct: 338 PPGSRGGYGPPGRGGYGPGPNGRG 361

>NEDD4_HUMAN (P46934) E3 ubiquitin-protein ligase NEDD4 (EC 6.3.2.-)|
          Length = 1000

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 2  HPTQAPPHATQNPDPSASASPGIPSTVGR 88
          HPT+APPHA   P     A P  P +  R
Sbjct: 8  HPTRAPPHALPTPRAPPRAPPPSPRSARR 36

>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2158

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 249 RRPDPGGSGPMPPRERGPTEPR 184
           R+P  GG GP PPR    TE R
Sbjct: 903 RKPARGGQGPPPPRRENRTETR 924

>CD1B1_SHEEP (Q28565) T-cell surface glycoprotein CD1b-1 precursor (CD1b-1|
           antigen) (SCD1A25)
          Length = 333

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 324 TSTPNLYVAI-ASGDVAVYCTALWSWRR 244
           TST  ++VAI  S  + + C ALW WRR
Sbjct: 299 TSTGLIFVAIIVSSLILLICLALWFWRR 326

>FA62A_HUMAN (Q9BSJ8) Protein FAM62A (Membrane bound C2 domain-containing|
           protein)
          Length = 1104

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = +2

Query: 5   PTQAPPHATQNPDPSASASPGIPSTVG 85
           PT  PP A   PDP +   P  P   G
Sbjct: 23  PTDQPPAAHAKPDPGSGGQPAGPGAAG 49

>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 231 GSGPMPPRERGPTEPRASAGTHE 163
           G+GP+PP + GP  P A  G  E
Sbjct: 443 GAGPVPPGKVGPATPSAQVGKWE 465

>PALI_NEUCR (Q7SFN5) pH-response regulator protein palI/rim-9|
          Length = 705

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
 Frame = +2

Query: 173 PALARGSVGP--RSRGGIGPDPPGSG 244
           P   RG  GP  R RGG GP P G G
Sbjct: 350 PQNGRGGYGPPGRGRGGYGPPPRGYG 375


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,230,752
Number of Sequences: 219361
Number of extensions: 973247
Number of successful extensions: 4600
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4583
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)