ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46e09 |
|---|---|
| Clone Library Name | barley_pub |
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 33.9 bits (76), Expect = 0.099 Identities = 16/47 (34%), Positives = 20/47 (42%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNPG 231 P A+ K P P P AP+P G P + + A P P PG Sbjct: 140 PAAKPESKPTPKPGQNVPKPHAPAPKPKPGAPSKSPKPGARPGPRPG 186
>KCNQ1_RAT (Q9Z0N7) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 669 Score = 32.0 bits (71), Expect = 0.38 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = -3 Query: 368 GARSSPKSMAPPASRFPAPACLAPRPLVGFPRRL 267 GA M+PP S PAPA L PRP V R+ Sbjct: 58 GAPGLAPPMSPPVSPVPAPADLGPRPRVSLDPRV 91
>RL22_DROME (P50887) 60S ribosomal protein L22| Length = 299 Score = 31.2 bits (69), Expect = 0.64 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPN 237 P +++P A PA+ PAPA A P V P +A+A P P+ Sbjct: 129 PAKKAAPAKAAAPAAAAPAPAAAA--PAVAKPAPKPKAKAAPAPS 171
>HPLN4_MOUSE (Q80WM4) Hyaluronan and proteoglycan link protein 4 precursor| (Brain link protein 2) (Link protein 4) Length = 400 Score = 30.8 bits (68), Expect = 0.84 Identities = 20/45 (44%), Positives = 21/45 (46%), Gaps = 11/45 (24%) Frame = -3 Query: 320 PAPACLAPRPLV---GFP---RRLL-----RARAIPNPNPGDWWW 219 P C PRP V GFP RRL RA P+P PG W W Sbjct: 333 PRTRCGGPRPGVRSLGFPDASRRLFGVYCYRAPGAPDPAPGGWGW 377
>TBX2_MOUSE (Q60707) T-box transcription factor TBX2 (T-box protein 2)| Length = 701 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/48 (43%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = -3 Query: 368 GARSSPKSMAPPASRFPAPA-CLAPRPLVGFPRRLLRARAIPNPNPGD 228 GA S S PP +R P P+ AP PL RL RARA P D Sbjct: 307 GAESDASSCDPPPAREPPPSPSAAPSPL-----RLHRARAEEKPGAAD 349
>ACHA4_HUMAN (P43681) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 9/56 (16%) Frame = -3 Query: 371 PGARSSPKSMAPPASRF---------PAPACLAPRPLVGFPRRLLRARAIPNPNPG 231 P A S +S+ PP+ F P P+C +P + + L +A P+P+PG Sbjct: 392 PPATSGTQSLHPPSPSFCVPLDVPAEPGPSCKSPSDQLPPQQPLEAEKASPHPSPG 447
>Y2850_MYCTU (O05809) Hypothetical protein Rv2850c/MT2916| Length = 629 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/39 (43%), Positives = 19/39 (48%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRAR 255 P RSSP+ APP+ F A P G P R RAR Sbjct: 355 PRLRSSPRPSAPPSKIFRTRALRVPGVGTGAPGRRSRAR 393
>IF2_STRAW (Q82K53) Translation initiation factor IF-2| Length = 1046 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAP-ACLAPRPLVGFPRRLLRARAIPNPNPG 231 PGA S ++ P A R PAP A RP R A A P P PG Sbjct: 68 PGAPSPAQAARPAAPRPPAPKPAAAERPAAA--ERPAAAPAAPGPRPG 113
>MLL4_HUMAN (Q9UMN6) Myeloid/lymphoid or mixed-lineage leukemia protein 4| (Trithorax homolog 2) Length = 2715 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 234 P A S P + PP++ P P C P P V P +P+P P Sbjct: 408 PPAPSPPPPLPPPSTSPPPPLCPPPPPPVSPP-------PLPSPPP 446
>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-like protein) (Atrophin-1-related protein) Length = 1566 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 353 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 228 P + P +RFP P P PL+G P +LR P P D Sbjct: 1458 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1502
>3BP1_HUMAN (Q9Y3L3) SH3 domain-binding protein 1 (3BP-1)| Length = 701 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 1/46 (2%) Frame = -3 Query: 368 GARSSPKSM-APPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 234 G+RSSP + PP S P PR LVG LRA +P P P Sbjct: 582 GSRSSPPAPPLPPGSGSPGTPQALPRRLVG---SSLRAPTVPPPLP 624
>PDZK4_HUMAN (Q76G19) PDZ domain-containing protein 4 (PDZ domain-containing| RING finger protein 4-like protein) Length = 769 Score = 28.9 bits (63), Expect = 3.2 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%) Frame = +2 Query: 278 GSRQEAEERGRQAPGSG---KPGGPWTSATTSRR 370 G RQ AEERGR+ P +G + GP +S SRR Sbjct: 537 GRRQHAEERGRRNPKTGLTLERVGPESSPYLSRR 570
>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-2) Length = 1558 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 353 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 228 P + P +RFP P P PL+G P +LR P P D Sbjct: 1450 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1494
>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)| Length = 2442 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 309 LPRSSASCRLPTPFASSARNPKSQ 238 LP+ +AS PTP AS A NP++Q Sbjct: 133 LPKQAASTSGPTPAASQALNPQAQ 156
>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein| (Atrophin-1-related protein) Length = 1559 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 3/45 (6%) Frame = -3 Query: 353 PKSMAPPASRFPAPACLAPRPLVGFP---RRLLRARAIPNPNPGD 228 P + P +RFP P P PL+G P +LR P P D Sbjct: 1451 PLTAGPHLARFPYPPGTLPNPLLGQPPHEHEMLRHPVFGTPYPRD 1495
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Frame = -3 Query: 353 PKSMAPPASRFPAPACLAP--------RPLVGFPRRLLRARAIPNP 240 P+ +AP ++R P P + P RPL PR R +PNP Sbjct: 243 PRPLAPNSTRDPPPRPITPGPSNTHGLRPLSVLPRASPRRGLLPNP 288
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 8/46 (17%) Frame = -3 Query: 353 PKSMAPPASRFPAPACLAP--------RPLVGFPRRLLRARAIPNP 240 P+ +AP ++R P P + P RPL PR R +PNP Sbjct: 243 PRPLAPHSTRDPPPRPITPGPSNTHDLRPLSVLPRTSPRRGLLPNP 288
>CCD95_HUMAN (Q8NBZ0) Coiled-coil domain-containing protein 95| Length = 244 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/37 (35%), Positives = 21/37 (56%) Frame = -3 Query: 350 KSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNP 240 + +PP P+P+ L+ P GFP L+A +P+P Sbjct: 95 RKRSPPLGGAPSPSSLSLPPSTGFP---LQASGVPSP 128
>POPD2_MOUSE (Q9ES82) Popeye domain-containing protein 2 (Popeye protein 2)| Length = 367 Score = 28.5 bits (62), Expect = 4.2 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 2/42 (4%) Frame = -3 Query: 347 SMAPPASRFPAPACLAPRPLVGFPRRLLRAR--AIPNPNPGD 228 + A P P P C AP FP L RAR +P P+ G+ Sbjct: 297 AQARPICIVPTPPCSAPPATTNFPVPLPRARMPRMPRPDSGN 338
>KCNQ1_MOUSE (P97414) Potassium voltage-gated channel subfamily KQT member 1| (Voltage-gated potassium channel subunit Kv7.1) (IKs producing slow voltage-gated potassium channel alpha subunit KvLQT1) (KQT-like 1) Length = 668 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/34 (44%), Positives = 17/34 (50%) Frame = -3 Query: 368 GARSSPKSMAPPASRFPAPACLAPRPLVGFPRRL 267 GA M+ P S PAPA L PRP V R+ Sbjct: 57 GAPGLAPPMSTPVSPAPAPADLGPRPRVSLDPRV 90
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 28.5 bits (62), Expect = 4.2 Identities = 13/41 (31%), Positives = 21/41 (51%) Frame = -2 Query: 366 REVVAEVHGPPGFPLPGACLPRSSASCRLPTPFASSARNPK 244 R+++ H P P PG PR S+ +P P + A +P+ Sbjct: 96 RDIITAWHPPAPLPSPGTTAPRPSS---IPAPAEAEAWSPR 133
>SOX7_MOUSE (P40646) Transcription factor SOX-7 (mSOX7)| Length = 380 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = +2 Query: 263 EANGVGSRQEAEERGRQAPGSGKPG 337 E NG+G R E E+RG +PG+ PG Sbjct: 147 EKNGIG-RGEKEDRGEYSPGATLPG 170
>CHCH2_HUMAN (Q9Y6H1) Coiled-coil-helix-coiled-coil-helix domain-containing| protein 2 (HCV NS2 trans-regulated protein) (NS2TP) Length = 151 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/26 (57%), Positives = 16/26 (61%) Frame = -3 Query: 368 GARSSPKSMAPPASRFPAPACLAPRP 291 G+RS MAPPASR P APRP Sbjct: 4 GSRSRTSRMAPPASRAPQMRA-APRP 28
>RL15_PSYAR (Q4FUD7) 50S ribosomal protein L15| Length = 146 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 2/43 (4%) Frame = +2 Query: 245 LGLRALEAN-GVGSRQEAEERGRQ-APGSGKPGGPWTSATTSR 367 +GLR E + GVG+++ A+ RGR G GK GG SR Sbjct: 1 MGLRLNELSPGVGAKKTAQRRGRGIGSGLGKTGGRGVKGQKSR 43
>KITH_BHV16 (P24096) Thymidine kinase (EC 2.7.1.21)| Length = 357 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%) Frame = -3 Query: 368 GARSSPKSMAPPASRFPAPACLAPR----PLVGFPRRLLRARAIPNPNPG 231 G+ + ++ AP P C+ P P++ F R +RA A P P PG Sbjct: 75 GSARARRAGAPRRRGRGGPGCVLPGQVRGPVLNFARARVRAAAPPGPAPG 124
>CBP_MOUSE (P45481) CREB-binding protein (EC 2.3.1.48)| Length = 2441 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 309 LPRSSASCRLPTPFASSARNPKSQ 238 LP+ +AS PTP AS A NP++Q Sbjct: 132 LPKQAASTSGPTPPASQALNPQAQ 155
>SHC2_MOUSE (Q8BMC3) SHC transforming protein 2 (SH2 domain protein C2) (Src| homology 2 domain-containing transforming protein C2) (Protein Sck) (Protein Sli) Length = 548 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -2 Query: 357 VAEVHGPPGFP----LPGACLPRSSASCRLP 277 VAE PG P + GAC PR +A C LP Sbjct: 25 VAEAQPEPGVPALAAVLGACEPRCAAPCPLP 55
>CAH11_SHEEP (Q95203) Carbonic anhydrase-related protein 2 precursor (CARP 2)| (CA-RP II) (CA-XI) Length = 328 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/32 (43%), Positives = 16/32 (50%) Frame = -3 Query: 317 APACLAPRPLVGFPRRLLRARAIPNPNPGDWW 222 AP APR LV + A P P+P DWW Sbjct: 4 APRLSAPRVLVLWAALGAAAHIGPAPDPEDWW 35
>SEM4B_MOUSE (Q62179) Semaphorin-4B precursor (Semaphorin C) (Sema C)| Length = 823 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -3 Query: 305 LAPRPLVGFPRRLLRARAIPNPNPGDW 225 L RP GFP +L+ NPNP DW Sbjct: 296 LCSRPDDGFPFNVLQDVFTLNPNPQDW 322
>I12R1_MOUSE (Q60837) Interleukin-12 receptor beta-1 chain precursor| (IL-12R-beta1) (Interleukin-12 receptor beta) (IL-12 receptor beta component) (CD212 antigen) Length = 738 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +2 Query: 287 QEAEERGRQAPGSGKPGGPWT 349 QE + R R+ SG PGGPW+ Sbjct: 225 QEIQIRRRRRLSSGAPGGPWS 245
>ETV4_HUMAN (P43268) ETS translocation variant 4 (Adenovirus E1A| enhancer-binding protein) (E1A-F) Length = 484 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 4/38 (10%) Frame = -3 Query: 332 ASRFPAPACLAPRPLVGFP----RRLLRARAIPNPNPG 231 A + PAP L PL FP R LR+ P+PG Sbjct: 137 AIKSPAPGALGQSPLQPFPRAEQRNFLRSSGTSQPHPG 174
>SIM2_MOUSE (Q61079) Single-minded homolog 2 (SIM transcription factor) (mSIM)| Length = 657 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = -3 Query: 365 ARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNPG 231 AR+ P+ APPA APA L P L+ + R L R + + PG Sbjct: 575 ARAPPECCAPPAPEPQAPAQL-PFVLLNYHRVLARRGPLGSAAPG 618
>WNK2_HUMAN (Q9Y3S1) Serine/threonine-protein kinase WNK2 (EC 2.7.11.1) (Protein| kinase with no lysine 2) (Protein kinase, lysine-deficient 2) Length = 2297 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -3 Query: 359 SSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRA 258 S+P+ PP + P+P P+P +G P LL A Sbjct: 1506 SAPREPLPPPAPEPSPHSGTPQPALGQPAPLLPA 1539
>ACHA4_PANTR (Q5IS77) Neuronal acetylcholine receptor protein, alpha-4 subunit| precursor Length = 627 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Frame = -3 Query: 371 PGARSSPKSMAPPASRF---------PAPACLAPRPLVGFPRRLLRARAIPNPNPG 231 P A S +S+ PP+ F P P+C +P + + L +A P+ +PG Sbjct: 392 PPATSGTQSLHPPSPSFCIPLDVPAEPGPSCKSPSDQLPAQQPLEAEKASPHASPG 447
>PLK4_HUMAN (O00444) Serine/threonine-protein kinase PLK4 (EC 2.7.11.21)| (Polo-like kinase 4) (PLK-4) (Serine/threonine-protein kinase Sak) (Serine/threonine-protein kinase 18) Length = 970 Score = 27.7 bits (60), Expect = 7.1 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 234 PG+ SSPK+++PP S + R F R ++ + A P P Sbjct: 807 PGSTSSPKALSPPPS---VDSNYPTRDRASFNRMVMHSAASPTQAP 849
>MLL2_HUMAN (O14686) Myeloid/lymphoid or mixed-lineage leukemia protein 2| (ALL1-related protein) Length = 5262 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 338 PPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 234 PP+ P+PA PLV P L +P+P P Sbjct: 4642 PPSPLAPSPASPPTEPLVELPTEPLAEPPVPSPLP 4676
>DUOX2_HUMAN (Q9NRD8) Dual oxidase 2 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| oxidase/peroxidase DUOX2) (NADPH thyroid oxidase 2) (Thyroid oxidase 2) (NADH/NADPH thyroid oxidase p138-tox) (p138 thyroid oxidase) (Large NOX 2) (Long NOX 2) Length = 1548 Score = 27.7 bits (60), Expect = 7.1 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNP 240 PG RS P+ + PPA AP P G +R + A+P P Sbjct: 971 PGERSHPQGLGPPAPE--APELGGP----GLKKRFGKKAAVPTP 1008
>DHX34_HUMAN (Q14147) Probable ATP-dependent RNA helicase DHX34 (EC 3.6.1.-)| (DEAH box protein 34) Length = 576 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 365 ARSSPKSMAPPASRFPAPACLAPR 294 A+SSP+ PPAS AP C R Sbjct: 537 AQSSPECCTPPASSLAAPRCCTHR 560
>NOTC4_HUMAN (Q99466) Neurogenic locus notch homolog protein 4 precursor (Notch| 4) (hNotch4) [Contains: Notch 4 extracellular truncation; Notch 4 intracellular domain] Length = 2003 Score = 27.3 bits (59), Expect = 9.3 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = +1 Query: 1 YCFVPRPRWHCCCLHLYALPCCRFFLLAC 87 +C P +HC CL + P C L +C Sbjct: 858 HCLQTGPSFHCLCLQGWTGPLCNLPLSSC 886
>TOM70_HUMAN (O94826) Mitochondrial precursor proteins import receptor| (Translocase of outer membrane TOM70) Length = 608 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/44 (38%), Positives = 18/44 (40%), Gaps = 9/44 (20%) Frame = +2 Query: 239 WDLGLRALEANGVGS---------RQEAEERGRQAPGSGKPGGP 343 W R EA G G R+ E R APGSG P GP Sbjct: 59 WSRQQRRREARGRGDASGLKRNSERKTPEGRASPAPGSGHPEGP 102
>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95| Length = 244 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 10/55 (18%) Frame = -3 Query: 368 GARSSPKSMA-PPASRFPAPACLAPRPLVG---------FPRRLLRARAIPNPNP 234 G SP S++ PP++ FP A AP P + FP L A +P P+P Sbjct: 102 GGAPSPSSLSLPPSTGFPLQASRAPSPYLSSLASPTYPPFPSDYL-ALQLPEPSP 155
>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) Length = 240 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRP 291 P AR +P M PP R P P P P Sbjct: 206 PPARGTPIGMPPPGMRPPPPGIRGPPP 232
>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRP 291 P AR +P M PP R P P P P Sbjct: 206 PPARGTPIGMPPPGMRPPPPGIRGPPP 232
>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N| (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing protein) Length = 240 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/27 (44%), Positives = 13/27 (48%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRP 291 P AR +P M PP R P P P P Sbjct: 206 PPARGTPIGMPPPGMRPPPPGIRGPPP 232
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 27.3 bits (59), Expect = 9.3 Identities = 17/46 (36%), Positives = 19/46 (41%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGFPRRLLRARAIPNPNP 234 PG R+SP +S PAP C PRP L P P P Sbjct: 116 PGVRASPPRSGVSSSARPAPGC--PRPACEPVYGPLTMSLKPQPQP 159
>HPLN4_HUMAN (Q86UW8) Hyaluronan and proteoglycan link protein 4 precursor| (Brain link protein 2) Length = 402 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/45 (42%), Positives = 20/45 (44%), Gaps = 11/45 (24%) Frame = -3 Query: 320 PAPACLAPRPLV---GFP---RRLL-----RARAIPNPNPGDWWW 219 P C RP V GFP RRL RA P+P PG W W Sbjct: 335 PRARCGGRRPGVRSLGFPDATRRLFGVYCYRAPGAPDPAPGGWGW 379
>SRBP1_CRIGR (Q60416) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1133 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/31 (38%), Positives = 20/31 (64%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLAPRPLVGF 279 P A+ SP ++ PP+ P P L+P P++G+ Sbjct: 134 PAAQPSPGTLLPPSFP-PPPLQLSPAPVLGY 163
>NIFA_AZOBR (P30667) Nif-specific regulatory protein| Length = 625 Score = 27.3 bits (59), Expect = 9.3 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 11/55 (20%) Frame = -3 Query: 371 PGARSSPKSMAPPASRFPAPACLA-----------PRPLVGFPRRLLRARAIPNP 240 P A ++PK+ A PA P PA A PRPL G RR P+P Sbjct: 490 PAAANAPKTPAMPAP-VPEPAGAAAARGRPARRVVPRPLAGLRRRPAGGSGPPDP 543 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,229,418 Number of Sequences: 219361 Number of extensions: 669798 Number of successful extensions: 3817 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 3353 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3778 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
