ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46e08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 408 e-111
2ref|XM_463457.1| Oryza sativa (japonica cultivar-group), predic... 252 9e-64
3ref|XM_463460.1| Oryza sativa (japonica cultivar-group), predic... 176 4e-41
4ref|XM_478770.1| Oryza sativa (japonica cultivar-group), mRNA 172 6e-40
5dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clon... 172 6e-40
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
7dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic D... 159 1e-35
8ref|XM_478769.1| Oryza sativa (japonica cultivar-group), mRNA 143 6e-31
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
10dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic D... 98 3e-17
11dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 90 7e-15
12gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (C... 74 4e-10
13gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence 62 2e-06
14emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BA... 58 3e-05
15ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G5... 56 1e-04
16emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Co... 56 1e-04
17ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G4... 46 0.099
18emb|AJ308542.2|LES308542 Lycopersicon esculentum mRNA for insuli... 44 0.39
19gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 42 1.5
20gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map... 42 1.5
21gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 6.1
22ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_... 40 6.1
23gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, com... 40 6.1
24emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 6.1
25gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, compl... 40 6.1
26gb|AC109469.2| Homo sapiens chromosome 5 clone RP11-349F8, compl... 40 6.1
27gb|AC069544.9| Homo sapiens chromosome 10 clone RP11-398C13, com... 40 6.1
28dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 6.1
29gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 6.1
30gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 6.1
31gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 6.1
32dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 6.1
33dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 6.1
34dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 6.1
35gb|AC155885.2| Medicago truncatula chromosome 7 BAC clone mth2-1... 40 6.1
36emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 6.1
37gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 6.1
38gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
39gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 6.1
40emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 6.1 
>dbj|AK100383.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023085G23, full
           insert sequence
          Length = 3262

 Score =  408 bits (206), Expect = e-111
 Identities = 284/310 (91%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 158 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 217

                                                                       
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaaggcggcggcgtgta 245
           |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct: 218 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaaggcggcggcgtgta 277

                                                                       
Query: 246 tggaggtcggcgtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcc 305
           ||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 278 tggaggttggcgtgggctcgttcagcgacccggaggggctcgagggcctcgcccacttcc 337

                                                                       
Query: 306 tcgagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaat 365
           ||||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |
Sbjct: 338 tcgagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagt 397

                                                                       
Query: 366 atatctctgagcatggtggttcttccaatgcctttacatcctccgagacaacaaattact 425
           ||||| | ||||||||||| |||| ||||||||  |||   || ||||||||||||| ||
Sbjct: 398 atatcacagagcatggtggctcttgcaatgcctacacaagttcggagacaacaaatttct 457

                     
Query: 426 attttgatgt 435
           ||||||||||
Sbjct: 458 attttgatgt 467
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>ref|XM_463457.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2841

 Score =  252 bits (127), Expect = 9e-64
 Identities = 184/203 (90%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 202 gcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagggc 261

                                                                       
Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaataccctggagaacaa 352
           ||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 262 ctcgcccacttcctcgagcatatgctattttatgccagtgagaaataccctggggaacaa 321

                                                                       
Query: 353 gattatacaaaatatatctctgagcatggtggttcttccaatgcctttacatcctccgag 412
           ||||| || || |||||| | ||||||||||| |||| ||||||||  |||   || |||
Sbjct: 322 gattacacgaagtatatcacagagcatggtggctcttgcaatgcctacacaagttcggag 381

                                  
Query: 413 acaacaaattactattttgatgt 435
           |||||||||| ||||||||||||
Sbjct: 382 acaacaaatttctattttgatgt 404



 Score =  159 bits (80), Expect = 1e-35
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 35  gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 94

                                                           
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
           |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 95  ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 142
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>ref|XM_463460.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2838

 Score =  176 bits (89), Expect = 4e-41
 Identities = 107/113 (94%)
 Strand = Plus / Plus

                                                                       
Query: 233 gcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagggc 292
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 190 gcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagggc 249

                                                                
Query: 293 ctcgcgcacttcctcgagcatatgctgttttatgccagtgagaaataccctgg 345
           ||||| ||||| ||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 250 ctcgcccactttctcgaacacatgctattttatgccagtgagaaataccctgg 302



 Score =  157 bits (79), Expect = 4e-35
 Identities = 100/107 (93%)
 Strand = Plus / Plus

                                                                       
Query: 126 gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
           |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 23  gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 82

                                                          
Query: 186 ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaag 232
           |||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 83  ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaag 129
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>ref|XM_478770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3199

 Score =  172 bits (87), Expect = 6e-40
 Identities = 165/191 (86%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423

                      
Query: 329 agtgagaaata 339
           |||||||||||
Sbjct: 424 agtgagaaata 434
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>dbj|AK100076.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001F09, full
           insert sequence
          Length = 3200

 Score =  172 bits (87), Expect = 6e-40
 Identities = 165/191 (86%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 244 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 303

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 304 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaacgtctcggtgggctacttc 363

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || |||||||||||||| |||||||||||||| ||||||||||| || ||||| 
Sbjct: 364 tgcgatcccgaggggctcgaggggctcgcgcacttccttgagcatatgcttttctatgct 423

                      
Query: 329 agtgagaaata 339
           |||||||||||
Sbjct: 424 agtgagaaata 434
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  159 bits (80), Expect = 1e-35
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
                |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 32978328 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 32978387

                                                                
Query: 186      ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
                |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 32978388 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 32978435



 Score =  159 bits (80), Expect = 1e-35
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                            
Query: 126      gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
                |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 32958783 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 32958842

                                                                
Query: 186      ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
                |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 32958843 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 32958890



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                            
Query: 231      aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
                |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 32978568 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 32978627

                                  
Query: 291      gcctcgcgcacttcctcg 308
                ||||||| ||||| ||||
Sbjct: 32978628 gcctcgcccactttctcg 32978645



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                            
Query: 231      aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
                |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 32959022 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 32959081

                                  
Query: 291      gcctcgcgcacttcctcg 308
                ||||||| ||||||||||
Sbjct: 32959082 gcctcgcccacttcctcg 32959099



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                            
Query: 308      gagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaatat 367
                ||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||
Sbjct: 32960652 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 32960711

                   
Query: 368      atc 370
                |||
Sbjct: 32960712 atc 32960714



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                                
Query: 314      atgctgttttatgccagtgagaaataccctgg 345
                ||||| ||||||||||||||||||||||||||
Sbjct: 32979329 atgctattttatgccagtgagaaataccctgg 32979360



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                            
Query: 375      agcatggtggttcttccaatgcctttacatcctccgagacaacaaattactattttgatg 434
                |||||||||| |||| ||||||||  |||   || ||||||||||||| |||||||||||
Sbjct: 32961268 agcatggtggctcttgcaatgcctacacaagttcggagacaacaaatttctattttgatg 32961327

                 
Query: 435      t 435
                |
Sbjct: 32961328 t 32961328
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>dbj|AP003224.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0010B10
          Length = 155263

 Score =  159 bits (80), Expect = 1e-35
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                         
Query: 126   gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
             |||||||||||||| ||||| ||||||||||||||||||||||||||||  || ||||||
Sbjct: 44556 gcaatgtggagttcatccgctcgcgcagcgacaagcgggagtaccgccgggtggtgctcc 44615

                                                             
Query: 186   ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
             |||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 44616 ccaatgcgctcgagtgcctcctcatcagcgactccgacaccgacaagg 44663



 Score =  159 bits (80), Expect = 1e-35
 Identities = 101/108 (93%)
 Strand = Plus / Plus

                                                                         
Query: 126   gcaatgtggagttcgtccgcgcgcgcagcgacaagcgggagtaccgccgcctgctgctcc 185
             |||||||||||||| |||||||||| |||||||||||||||||||||||  || ||||||
Sbjct: 25011 gcaatgtggagttcatccgcgcgcggagcgacaagcgggagtaccgccgggtggtgctcc 25070

                                                             
Query: 186   ccaacgcgctcgagtgcctcctcatcagcgacgccgacaccgacaagg 233
             |||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct: 25071 ccaacgcgctcgagtgcctcctcatcagcgactccgaaaccgacaagg 25118



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                         
Query: 231   aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
             |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 44796 aggcggcggcgtgtatggaggtcggcgtgggctcgttcagcgacccggaggggctcgagg 44855

                               
Query: 291   gcctcgcgcacttcctcg 308
             ||||||| ||||| ||||
Sbjct: 44856 gcctcgcccactttctcg 44873



 Score =  131 bits (66), Expect = 2e-27
 Identities = 75/78 (96%)
 Strand = Plus / Plus

                                                                         
Query: 231   aggcggcggcgtgtatggaggtcggcgtgggctccttcagcgacccggaggggctcgagg 290
             |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct: 25250 aggcggcggcgtgtatggaggttggcgtgggctcgttcagcgacccggaggggctcgagg 25309

                               
Query: 291   gcctcgcgcacttcctcg 308
             ||||||| ||||||||||
Sbjct: 25310 gcctcgcccacttcctcg 25327



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 58/63 (92%)
 Strand = Plus / Plus

                                                                         
Query: 308   gagcatatgctgttttatgccagtgagaaataccctggagaacaagattatacaaaatat 367
             ||||||||||| |||||||||||||||||||||||||| ||||||||||| || || |||
Sbjct: 26880 gagcatatgctattttatgccagtgagaaataccctggggaacaagattacacgaagtat 26939

                
Query: 368   atc 370
             |||
Sbjct: 26940 atc 26942



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 314   atgctgttttatgccagtgagaaataccctgg 345
             ||||| ||||||||||||||||||||||||||
Sbjct: 45557 atgctattttatgccagtgagaaataccctgg 45588



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                         
Query: 375   agcatggtggttcttccaatgcctttacatcctccgagacaacaaattactattttgatg 434
             |||||||||| |||| ||||||||  |||   || ||||||||||||| |||||||||||
Sbjct: 27496 agcatggtggctcttgcaatgcctacacaagttcggagacaacaaatttctattttgatg 27555

              
Query: 435   t 435
             |
Sbjct: 27556 t 27556
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>ref|XM_478769.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2997

 Score =  143 bits (72), Expect = 6e-31
 Identities = 210/256 (82%)
 Strand = Plus / Plus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 130 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 189

                                                                       
Query: 209 atcagcgacgccgacaccgacaaggcggcggcgtgtatggaggtcggcgtgggctccttc 268
            |||||||| ||||||||||||||||||||||||  ||| | |||   ||||||| ||||
Sbjct: 190 gtcagcgaccccgacaccgacaaggcggcggcgtcgatgaatgtctcggtgggctacttc 249

                                                                       
Query: 269 agcgacccggaggggctcgagggcctcgcgcacttcctcgagcatatgctgttttatgcc 328
            |||| || ||| |||||   ||||| || || ||||| ||||||||||| || ||||| 
Sbjct: 250 tgcgatcccgagaggctccctggccttgcacatttccttgagcatatgcttttctatgct 309

                                                                       
Query: 329 agtgagaaataccctggagaacaagattatacaaaatatatctctgagcatggtggttct 388
           || |||||||||||||  ||| | |||||  |||| |||||  | |||||||||||||| 
Sbjct: 310 agcgagaaataccctgtggaagacgattactcaaagtatattgcagagcatggtggttca 369

                           
Query: 389 tccaatgcctttacat 404
            |||| ||||| ||||
Sbjct: 370 accaacgccttcacat 385
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 22901086 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 22901027

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                 |||||||| |||||||||||||||
Sbjct: 22901026 gtcagcgaccccgacaccgacaagg 22901002



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||| ||
Sbjct: 22937406 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 22937347

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                ||||||||| |||||||||| ||||
Sbjct: 22937346 atcagcgaccccgacaccgataagg 22937322



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                            
Query: 149      cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
                |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 22918850 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 22918791

                                         
Query: 209      atcagcgacgccgacaccgacaagg 233
                 |||||||| |||||||||||||||
Sbjct: 22918790 gtcagcgaccccgacaccgacaagg 22918766



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 257      gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306
                ||||||| |||| |||| || |||||||||||||| ||||||||||||||
Sbjct: 22918623 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 22918574



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 308      gagcatatgctgttttatgccagtgagaaataccctg 344
                ||||||||||| || ||||| || |||||||||||||
Sbjct: 22899442 gagcatatgcttttctatgctagcgagaaataccctg 22899406



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                                
Query: 308      gagcatatgctgttttatgccagtgagaaata 339
                ||||||||||| || ||||| |||||||||||
Sbjct: 22916634 gagcatatgcttttctatgctagtgagaaata 22916603
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>dbj|AP003981.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1019_E02
          Length = 121607

 Score = 97.6 bits (49), Expect = 3e-17
 Identities = 76/85 (89%)
 Strand = Plus / Minus

                                                                         
Query: 149   cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
             |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||||||
Sbjct: 94353 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcctc 94294

                                      
Query: 209   atcagcgacgccgacaccgacaagg 233
              |||||||| |||||||||||||||
Sbjct: 94293 gtcagcgaccccgacaccgacaagg 94269



 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                          
Query: 149    cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
              |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 112117 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 112058

                                       
Query: 209    atcagcgacgccgacaccgacaagg 233
               |||||||| |||||||||||||||
Sbjct: 112057 gtcagcgaccccgacaccgacaagg 112033



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                
Query: 257    gtgggctccttcagcgacccggaggggctcgagggcctcgcgcacttcct 306
              ||||||| |||| |||| || |||||||||||||| ||||||||||||||
Sbjct: 111890 gtgggctacttctgcgatcccgaggggctcgaggggctcgcgcacttcct 111841



 Score = 42.1 bits (21), Expect = 1.5
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 308   gagcatatgctgttttatgccagtgagaaataccctg 344
             ||||||||||| || ||||| || |||||||||||||
Sbjct: 92709 gagcatatgcttttctatgctagcgagaaataccctg 92673



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 308    gagcatatgctgttttatgccagtgagaaata 339
              ||||||||||| || ||||| |||||||||||
Sbjct: 109901 gagcatatgcttttctatgctagtgagaaata 109870
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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 89.7 bits (45), Expect = 7e-15
 Identities = 75/85 (88%)
 Strand = Plus / Minus

                                                                         
Query: 149   cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
             |||| ||||||||| | |||||||||| |  ||||||||||||| |||||||||||| ||
Sbjct: 12620 cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgccctcgagtgcctcgtc 12561

                                      
Query: 209   atcagcgacgccgacaccgacaagg 233
             ||||||||| |||||||||| ||||
Sbjct: 12560 atcagcgaccccgacaccgataagg 12536
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>gb|AY022725.1| Oryza sativa microsatellite MRG5050 containing (CCG)X10, closest to
           marker R2561, genomic sequence
          Length = 230

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Minus

                                                                       
Query: 149 cgcagcgacaagcgggagtaccgccgcctgctgctccccaacgcgctcgagtgcctcctc 208
           |||| ||||||||| | |||||||||| |  ||||||||||||  |||||||||||||||
Sbjct: 77  cgcaacgacaagcgcgggtaccgccgcgtcgtgctccccaacgacctcgagtgcctcctc 18

                            
Query: 209 atcagcgacgccgacac 225
            |||||||| |||||||
Sbjct: 17  gtcagcgaccccgacac 1
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>gb|AY035059.1| Arabidopsis thaliana At3g57470 mRNA sequence
          Length = 3270

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 40/43 (93%)
 Strand = Plus / Plus

                                                      
Query: 302 ttcctcgagcatatgctgttttatgccagtgagaaataccctg 344
           ||||| |||||||||||||||||||| ||||| ||||||||||
Sbjct: 341 ttccttgagcatatgctgttttatgcaagtgaaaaataccctg 383
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>emb|AL133248.1|ATT8H10 Arabidopsis thaliana DNA chromosome 3, BAC clone T8H10
          Length = 87503

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 308   gagcatatgctgttttatgccagtgagaaataccctg 344
             |||||||||||||||||||| ||||| ||||||||||
Sbjct: 29242 gagcatatgctgttttatgcaagtgaaaaataccctg 29206
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>ref|NM_115607.2| Arabidopsis thaliana metalloendopeptidase AT3G57470 mRNA, complete
           cds
          Length = 3179

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 309 agcatatgctgttttatgccagtgagaaataccctg 344
           ||||||||||||||||||| ||||| ||||||||||
Sbjct: 354 agcatatgctgttttatgcaagtgaaaaataccctg 389
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>emb|BX823565.1|CNS0A4WF Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS51ZC05 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 3174

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 309 agcatatgctgttttatgccagtgagaaataccctg 344
           ||||||||||||||||||| ||||| ||||||||||
Sbjct: 357 agcatatgctgttttatgcaagtgaaaaataccctg 392
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>ref|NM_129743.2| Arabidopsis thaliana metalloendopeptidase AT2G41790 mRNA, complete
           cds
          Length = 3072

 Score = 46.1 bits (23), Expect = 0.099
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                              
Query: 302 ttcctcgagcatatgctgttttatgccagtgagaa 336
           ||||| ||||||||||| |||||||| ||||||||
Sbjct: 208 ttccttgagcatatgctattttatgcaagtgagaa 242
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>emb|AJ308542.2|LES308542 Lycopersicon esculentum mRNA for insulin degrading enzyme (ide
           gene)
          Length = 3305

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 311 catatgctgttttatgccagtgagaa 336
           ||||||||||||||||| ||||||||
Sbjct: 257 catatgctgttttatgcaagtgagaa 282
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 297     cgcacttcctcgagcatatgctgtt 321
               ||||||||||||||||| |||||||
Sbjct: 1681886 cgcacttcctcgagcatctgctgtt 1681862
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>gb|AC002339.3| Arabidopsis thaliana chromosome 2 clone T11A7 map CIC11C08, complete
             sequence
          Length = 91071

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 308   gagcatatgctgttttatgccagtgagaa 336
             ||||||||||| |||||||| ||||||||
Sbjct: 44867 gagcatatgctattttatgcaagtgagaa 44895
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 290     ggcctcgcgcacttcctcga 309
               ||||||||||||||||||||
Sbjct: 1145676 ggcctcgcgcacttcctcga 1145657
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>ref|XM_842838.1| Leishmania major strain Friedlin helicase (LMJ_0909) partial mRNA
          Length = 2862

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 290  ggcctcgcgcacttcctcga 309
            ||||||||||||||||||||
Sbjct: 2349 ggcctcgcgcacttcctcga 2330
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>gb|AC113597.12| Mus musculus chromosome 1, clone RP23-375F6, complete sequence
          Length = 224996

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    aaaatatatctctgagcatg 380
              ||||||||||||||||||||
Sbjct: 122921 aaaatatatctctgagcatg 122940
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2361054 gagacaacaaattactaatttgat 2361077
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>gb|AC113370.2| Homo sapiens chromosome 5 clone RP11-124O5, complete sequence
          Length = 189590

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 418    aaattactattttgatgtta 437
              ||||||||||||||||||||
Sbjct: 108118 aaattactattttgatgtta 108099
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>gb|AC109469.2| Homo sapiens chromosome 5 clone RP11-349F8, complete sequence
          Length = 184776

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   aaattactattttgatgtta 437
             ||||||||||||||||||||
Sbjct: 17263 aaattactattttgatgtta 17244
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>gb|AC069544.9| Homo sapiens chromosome 10 clone RP11-398C13, complete sequence
          Length = 214866

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 356  tatacaaaatatatctctga 375
            ||||||||||||||||||||
Sbjct: 8167 tatacaaaatatatctctga 8148
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2439235 gagacaacaaattactaatttgat 2439258
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2369092 gagacaacaaattactaatttgat 2369115
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2379758 gagacaacaaattactaatttgat 2379781
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2432959 gagacaacaaattactaatttgat 2432982
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2381949 gagacaacaaattactaatttgat 2381972
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2369735 gagacaacaaattactaatttgat 2369758
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     ctcgcgcacttcctcgagca 312
               ||||||||||||||||||||
Sbjct: 8220558 ctcgcgcacttcctcgagca 8220577
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>gb|AC155885.2| Medicago truncatula chromosome 7 BAC clone mth2-10p23, complete
             sequence
          Length = 116747

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 418   aaattactattttgatgtta 437
             ||||||||||||||||||||
Sbjct: 76350 aaattactattttgatgtta 76331
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2468870 gagacaacaaattactaatttgat 2468893
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gagtaccgccgcctgctgct 183
               ||||||||||||||||||||
Sbjct: 3721129 gagtaccgccgcctgctgct 3721148
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 164     gagtaccgccgcctgctgct 183
               ||||||||||||||||||||
Sbjct: 1356741 gagtaccgccgcctgctgct 1356760
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 287     gagggcctcgcgcacttcctcgagcatatgctgttt 322
               ||||| || ||||||||||| ||||| |||||||||
Sbjct: 5141980 gagggactggcgcacttcctggagcacatgctgttt 5142015
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 410     gagacaacaaattactattttgat 433
               ||||||||||||||||| ||||||
Sbjct: 2321643 gagacaacaaattactaatttgat 2321666


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,031,001
Number of Sequences: 3902068
Number of extensions: 3031001
Number of successful extensions: 64341
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63871
Number of HSP's gapped (non-prelim): 465
length of query: 453
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 431
effective length of database: 17,147,199,772
effective search space: 7390443101732
effective search space used: 7390443101732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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