>KPR1_YEAST (P32895) Ribose-phosphate pyrophosphokinase 1 (EC 2.7.6.1)|
           (Phosphoribosyl pyrophosphate synthetase 1)
          Length = 427

 Score = 33.5 bits (75), Expect = 0.23
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +1

Query: 262 DDEDILVSDGDVDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQVELLYEER 426
           DDE    +D D D + E+   +H I GL+   L      V   DE+++ +LY E+
Sbjct: 258 DDE----ADDDEDAILESDSELHSIDGLDSHGLGGTYDAVDSEDEEEIPVLYREQ 308

>MBD1_HUMAN (Q9UIS9) Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding|
           protein MBD1) (Protein containing methyl-CpG-binding
           domain 1)
          Length = 605

 Score = 31.6 bits (70), Expect = 0.87
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = +3

Query: 6   QQIMPTVFSKVKDSHINPSFHRRRRLPLPGRK-DLRPPLSPTATVKLAR 149
           ++++P+V+S+ +D   +P  +RRR+ P   R+  L P L PT   + A+
Sbjct: 383 KRLLPSVWSESEDGAGSPPPYRRRKRPSSARRHHLGPTLKPTLATRTAQ 431

>MALT_VIBVY (Q7MG94) HTH-type transcriptional regulator malT (ATP-dependent|
           transcriptional activator malT)
          Length = 902

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 295 VDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQVELLYEE 423
           +DF++   E  +L+T  NR  + + +  V   DE+Q ++L +E
Sbjct: 714 LDFLQSEAEKANLVTDRNRNLIIEAIFAVHQKDENQAKVLLKE 756

>DDX4_MOUSE (Q61496) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)|
           (DEAD box protein 4) (VASA homolog) (Mvh)
          Length = 702

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +1

Query: 166 GSSTHSRFVSYSMGKSSKKN--KVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHLIT 339
           GS  +S       G+SS     KV   PP PP+  DED + +              H  T
Sbjct: 194 GSGKNSWKSETEGGESSDSQGPKVTYIPPPPPE--DEDSIFA--------------HYQT 237

Query: 340 GLNRKALDKVVTRVPDHDEDQVELLYEE 423
           G+N    D ++  V  HD     L +EE
Sbjct: 238 GINFDKYDTILVEVSGHDAPPAILTFEE 265

>DDX4_HUMAN (Q9NQI0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)|
           (DEAD box protein 4) (VASA homolog)
          Length = 724

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 160 LRGSSTHSRFVSYSMGKSSKKN--KVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHL 333
           + GS  +S       G+SS     KV   PP PP+  DED + +              H 
Sbjct: 219 ITGSGKNSWKSEAEGGESSDTQGPKVTYIPPPPPE--DEDSIFA--------------HY 262

Query: 334 ITGLNRKALDKVVTRVPDHDEDQVELLYEE 423
            TG+N    D ++  V  HD     L +EE
Sbjct: 263 QTGINFDKYDTILVEVSGHDAPPAILTFEE 292

>RED_HUMAN (Q13123) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +1

Query: 301 FVEENREHVHLITGLNRKALDKVVTRVPDHDEDQVELL 414
           F+  + EH HL+ GL+   L KV   +   D+++ EL+
Sbjct: 152 FLGGDMEHTHLVKGLDFALLQKVRLEIASKDKEEEELM 189

>DDX4_PIG (Q6GWX0) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)|
           (DEAD box protein 4) (VASA homolog) (VASA-like protein)
          Length = 722

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
 Frame = +1

Query: 166 GSSTHSRFVSYSMGKSSKKN--KVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHLIT 339
           GS  +S       G+SS     KV   PP PP+  DED + +              H  T
Sbjct: 219 GSGKNSWKSEAEGGESSDTQGPKVTYIPPPPPE--DEDSIFA--------------HYQT 262

Query: 340 GLNRKALDKVVTRVPDHDEDQVELLYEE 423
           G+N    D ++  V  HD     L +EE
Sbjct: 263 GINFDKYDTILVEVSGHDAPPAILTFEE 290

>SERB_SCHPO (O74382) Probable phosphoserine phosphatase (EC 3.1.3.3) (PSP)|
           (O-phosphoserine phosphohydrolase) (PSPase)
          Length = 298

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 277 LVSDGDVDFVEENREHVHLITGLNRKALDKVVTRV 381
           L  +G++DF E  R  V L+ GL+   ++KV+ ++
Sbjct: 112 LAMNGEIDFQESLRRRVSLLQGLSVDVINKVIGKI 146

>SM3L3_ARATH (Q9FIY7) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 3 (EC
           3.6.1.-) (SMARCA3-like protein 3)
          Length = 1277

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/44 (34%), Positives = 28/44 (63%)
 Frame = +1

Query: 202 MGKSSKKNKVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHL 333
           +GK+     +ILA P   + ++ED+LV+D + D  + NR+ +H+
Sbjct: 691 LGKTVMTIALILARPGRGNPENEDVLVADVNAD--KRNRKEIHM 732

>DDX4_RAT (Q64060) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)|
           (DEAD box protein 4) (VASA homolog) (rVLG)
          Length = 713

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 20/66 (30%), Positives = 27/66 (40%)
 Frame = +1

Query: 226 KVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQV 405
           KV   PP PP+  DED + +              H  TG+N    D ++  V  HD    
Sbjct: 228 KVTYIPPPPPE--DEDSIFA--------------HYQTGINFDKYDTILVEVSGHDAPPA 271

Query: 406 ELLYEE 423
            L +EE
Sbjct: 272 ILTFEE 277

>YOM4_CAEEL (Q23202) Hypothetical UPF0023 protein W06E11.4 in chromosome III|
          Length = 253

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = +1

Query: 175 THSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDGDVDFVEENRE 321
           TH+ F + S G+ SKK ++I A  +   ++   I++  GD+   E+ R+
Sbjct: 55  THTVFSNVSKGQLSKKEELIAAFGIEDQLEICKIILDKGDLQVSEKERQ 103

>CTN3_HUMAN (Q9UI47) Alpha-3 catenin (Alpha T-catenin) (Cadherin-associated|
           protein)
          Length = 895

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +3

Query: 78  RLPLPGRKDLRPPLSPTATVKLARSASASGKLNPLQICVVFHG 206
           R+  P +K L     P  T    R  SA  K++PLQ+   F G
Sbjct: 849 RMKAPAKKPLIKREKPEETCAAVRRGSAKKKIHPLQVMSEFRG 891

>YHAM_BACSK (Q5WHU5) 3'-5' exoribonuclease yhaM (EC 3.1.-.-)|
          Length = 319

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 372 DDFVESLPVEPGDQVDVLSILLDEIHIP 289
           +DFV S P+ P D +D ++  + EIH P
Sbjct: 99  NDFVRSAPLAPNDMLDEVNQYIFEIHNP 126

>MALT_VIBVU (Q8D4P3) HTH-type transcriptional regulator malT (ATP-dependent|
           transcriptional activator malT)
          Length = 902

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +1

Query: 295 VDFVEENREHVHLITGLNRKALDKVVTRVPDHDEDQVELLYEE 423
           ++F++   E  +L+T  NR  + + +  V   DE+Q ++L +E
Sbjct: 714 LNFLQSEAEKANLVTDRNRNLIIEAIFAVHQKDENQAKVLLKE 756

>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog) (hHYD) (Progestin-induced protein)
          Length = 2799

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139  NLRGQRPLRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPD--VDDEDILVSDGDVDFV 306
            +LR +  +R S   +    +  G SS  ++  ++PP+ P   V D   +  DGD+DF+
Sbjct: 985  SLRLREMMRRSLRAAGLGRHEAGASSSDHQDPVSPPIAPPSWVPDPPAMDPDGDIDFI 1042

>RED_MOUSE (Q9Z1M8) Protein Red (Protein RER) (IK factor) (Cytokine IK)|
          Length = 557

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 301 FVEENREHVHLITGLNRKALDKVVTRVPDHDEDQVELL 414
           F+  + EH HL+ GL+   L KV   +   ++++ EL+
Sbjct: 152 FLGGDMEHTHLVKGLDFALLQKVRAEIASKEKEEEELM 189

>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic|
            discs protein homolog)
          Length = 2792

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 139  NLRGQRPLRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPD--VDDEDILVSDGDVDFV 306
            +LR +  +R S   +    +  G SS  ++  ++PP+ P   V D   +  DGD+DF+
Sbjct: 979  SLRLREMMRRSLRAAGLGRHEAGASSSDHQDPVSPPIAPPSWVPDPPSMDPDGDIDFI 1036

>HSP83_IPONI (P51819) Heat shock protein 83|
          Length = 703

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +1

Query: 178 HSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDGDVDFVEENRE 321
           HS F+SY +   ++K        +  D DDE     +GD++ V+E++E
Sbjct: 203 HSEFISYPIYLWTEKTT---EKEISDDEDDEPKKEEEGDIEEVDEDKE 247

>Y250_AQUAE (O66611) Hypothetical protein aq_250|
          Length = 145

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +2

Query: 131 DRETCEVSVRFGEAQPTPDLCRIPWGR 211
           ++ T  +  R GE  P P LC IPW R
Sbjct: 79  EKGTYGICERCGEEIPEPRLCAIPWTR 105

>IF2_PARUW (Q6MD64) Translation initiation factor IF-2|
          Length = 920

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +1

Query: 118 FLLPRP*NLRGQRPLRGSSTHSRFVSYSMGKSSKKNKVILAPPLPPDVDDEDILVSDGD 294
           F+ P+P   R  RPL  ++++ + VS +  +   KNK+    P     ++  +L +D D
Sbjct: 210 FIKPKPQPERVSRPLEANNSNQKEVSEANKEKLDKNKI---KPKSKGFEEPKVLTADDD 265

>HSP11_WHEAT (P12810) 16.9 kDa class I heat shock protein (Low molecular weight|
           heat shock protein) (Heat shock protein 17) (HSP 16.9)
          Length = 151

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = -2

Query: 333 QVDVLSILLDEIHIPVGDQDVLVVDIRRQRRRED 232
           +VD+  +  +E+ + V D +VLVV   R R +ED
Sbjct: 58  KVDLPGVKKEEVKVEVEDGNVLVVSGERSREKED 91

>NTP2_MCV1 (Q98218) Nucleoside triphosphatase II (EC 3.6.1.15) (NTPase II)|
           (Nucleoside triphosphate phosphohydrolase II) (NPH II)
          Length = 684

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 12/36 (33%), Positives = 23/36 (63%)
 Frame = -2

Query: 318 SILLDEIHIPVGDQDVLVVDIRRQRRREDDLVLLAA 211
           +++LDE+H      D+++  +R  R R D +VL++A
Sbjct: 304 TVILDEVHEHDQMADIMLAVLRVHRARVDSIVLMSA 339

>OPA1_ONCMA (O93248) Dynamin-like 120 kDa protein, mitochondrial precursor|
            (120-kDa G protein expressed in motor neurons) (mG120)
          Length = 971

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +1

Query: 298  DFVEENREHVHLITGLNRKALD--KVVTRVPDHDEDQVELLYEER 426
            DF E+N   VHLITG   +  +  K V  + +  E  +E L++E+
Sbjct: 927  DFGEDNERKVHLITGRRVQLAEDLKKVREIQEKLEAFIEALHKEK 971

>DDX4_MACFA (Q4R5S7) Probable ATP-dependent RNA helicase DDX4 (EC 3.6.1.-)|
           (DEAD box protein 4) (VASA homolog)
          Length = 725

 Score = 28.1 bits (61), Expect = 9.7
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 2/90 (2%)
 Frame = +1

Query: 160 LRGSSTHSRFVSYSMGKSSKKN--KVILAPPLPPDVDDEDILVSDGDVDFVEENREHVHL 333
           + GS  +S       G+SS     KV   PP PP+  DED + +              H 
Sbjct: 220 ITGSGKNSWKSEAEGGESSDTQGPKVTYIPPPPPE--DEDSIFA--------------HY 263

Query: 334 ITGLNRKALDKVVTRVPDHDEDQVELLYEE 423
            TG++    D ++  V  HD     L +EE
Sbjct: 264 QTGISFDKYDTILVEVSGHDAPPAILTFEE 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,092,956
Number of Sequences: 219361
Number of extensions: 873960
Number of successful extensions: 3397
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3393
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)