ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46e01 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/72 (37%), Positives = 41/72 (56%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/72 (37%), Positives = 41/72 (56%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 48.9 bits (115), Expect = 6e-06 Identities = 26/72 (36%), Positives = 41/72 (56%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 +DLGSE +KVA V PG P+ + +N+ S+RK+P + L + R G+ AA + ++P Sbjct: 38 VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNPK 94 Query: 360 KVFSRMRDLLAK 395 + LL K Sbjct: 95 ATLRYFQHLLGK 106
>YAM6_SCHPO (Q10061) Heat shock protein 70 homolog precursor| Length = 848 Score = 41.2 bits (95), Expect = 0.001 Identities = 21/70 (30%), Positives = 37/70 (52%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 ID G+EW K A + PG P+ + + + ++RK + A R+ G +A+ + R PA Sbjct: 27 IDYGTEWTKAALI--KPG-IPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA 83 Query: 360 KVFSRMRDLL 389 +++LL Sbjct: 84 HSIRNVKELL 93
>GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog precursor (GRP| 78) Length = 655 Score = 35.4 bits (80), Expect = 0.063 Identities = 24/87 (27%), Positives = 38/87 (43%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 IDLG+ + V GR + + NE+ R +P+ + DG R GE A HP Sbjct: 33 IDLGTTYSCVGV--FKNGR--VEILNNELGNRITPSYVSFVDGERKVGEAAKLEATVHPT 88 Query: 360 KVFSRMRDLLAKPFPYARALADSLFLP 440 + ++ L+ + F + D LP Sbjct: 89 QTVFDVKRLIGRKFDDQEVVKDRSLLP 115
>CHEB2_PSEF5 (Q4KG36) Chemotaxis response regulator protein-glutamate| methylesterase 2 (EC 3.1.1.61) Length = 373 Score = 32.7 bits (73), Expect = 0.41 Identities = 15/27 (55%), Positives = 17/27 (62%) Frame = +1 Query: 10 APAPSTLASSRSPNPDPPACHPTSPLA 90 APAPS+ ASSRSP P P +P A Sbjct: 151 APAPSSFASSRSPAPAPAPARAAAPAA 177
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.0 bits (71), Expect = 0.70 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -2 Query: 371 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 213 G G+ +RG+ R +G + + GQ G +LGH G G R + HG Sbjct: 261 GSRSGQSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHG 313
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 30.8 bits (68), Expect = 1.6 Identities = 21/74 (28%), Positives = 36/74 (48%) Frame = +3 Query: 180 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 359 ID G+ +A +A RA I V +NE+S R +P+L + + +R GE A A + Sbjct: 10 IDFGNSKTVIA---VARNRA-IDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEASNFR 65 Query: 360 KVFSRMRDLLAKPF 401 ++ L + + Sbjct: 66 NTVGSLKRLAGRTY 79
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -2 Query: 122 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 12 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>IGHA1_GORGO (P20758) Ig alpha-1 chain C region| Length = 353 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +1 Query: 7 RAPA-PSTLASSRSPNPDPPACHPTSPLAR 93 R P+ P T + S P P PP CHP L R Sbjct: 102 RVPSTPPTPSPSTPPTPSPPCCHPRLSLHR 131
>PYRE_SYNEL (Q8DHW5) Orotate phosphoribosyltransferase (EC 2.4.2.10) (OPRT)| (OPRTase) Length = 189 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/56 (30%), Positives = 28/56 (50%) Frame = +3 Query: 237 APIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPAKVFSRMRDLLAKPFP 404 AP AVA+ ++ P + A++ + LAG++ A + R AK M + P P Sbjct: 62 APEAVAVAGLTLGADPLVVAVSVLSNLAGQDRAALIVRKEAKGHGTMSFIEGPPLP 117
>GP1_CHLRE (Q9FPQ6) Vegetative cell wall protein gp1 precursor| (Hydroxyproline-rich glycoprotein 1) Length = 555 Score = 30.0 bits (66), Expect = 2.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +1 Query: 1 GSRAPAPSTLASSRSPNPDPPACHPTSPLARSP 99 G +PAP + S P+P PP+ P SP SP Sbjct: 69 GPPSPAPPSPPSPAPPSPAPPSPAPPSPAPPSP 101 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +1 Query: 10 APAPSTLASSRSPNPDPPACHPTSPLARSP 99 +PAP + S P+P PPA P SP+ SP Sbjct: 222 SPAPPSPPSPAPPSPSPPA--PPSPVPPSP 249
>SSGP_VOLCA (P21997) Sulfated surface glycoprotein 185 precursor (SSG 185)| Length = 485 Score = 30.0 bits (66), Expect = 2.7 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P+P ASSR P+P PP+ P SP SP Sbjct: 231 PSPQPTASSRPPSP-PPSPRPPSPPPPSP 258
>NU214_HUMAN (P35658) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)| (214 kDa nucleoporin) (CAN protein) Length = 2090 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/32 (46%), Positives = 19/32 (59%) Frame = +1 Query: 1 GSRAPAPSTLASSRSPNPDPPACHPTSPLARS 96 GS +P PS + +SP PPA P SP A+S Sbjct: 654 GSSSPVPSMV--QKSPRITPPAAKPGSPQAKS 683
>HXC4_HUMAN (P09017) Homeobox protein Hox-C4 (Hox-3E) (CP19)| Length = 264 Score = 29.6 bits (65), Expect = 3.5 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 6/35 (17%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 99 PAP + AS+ SP+P PPAC HP+S ++ P Sbjct: 100 PAPLSGASA-SPSPAPPACSQPAPDHPSSAASKQP 133
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +1 Query: 7 RAPAPSTLASSRSPNPDPPACHPTSP 84 R PA T +S P+P PPA P +P Sbjct: 2832 RNPAEPTSSSPAGPSPPPPAVQPVAP 2857
>HXC4_MOUSE (Q08624) Homeobox protein Hox-C4 (Hox-3.5)| Length = 264 Score = 29.3 bits (64), Expect = 4.5 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPAC------HPTSPLARSP 99 PAP + +S SP+P PPAC HP+S ++ P Sbjct: 100 PAPLS-GTSASPSPAPPACSQPAPDHPSSAASKQP 133
>SPT5H_MOUSE (O55201) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1082 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 926 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 954
>SPT5H_HUMAN (O00267) Transcription elongation factor SPT5 (hSPT5) (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (DSIF p160) (Tat-cotransactivator 1 protein) (Tat-CT1 protein) Length = 1087 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 932 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 960
>SPT5H_PONPY (Q5R405) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1083 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 928 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 956
>SPT5H_CHICK (Q5ZI08) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) Length = 1079 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 924 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 952
>POLR_EPMV (P20126) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1839 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%) Frame = +1 Query: 25 TLASSRSP----NPDPPACHPTSPLARSP 99 TL +++P NP PP+ HP +PLA P Sbjct: 705 TLVPAKTPSIYANPTPPSSHPFTPLADDP 733
>SPT5H_BRARE (Q9DDT5) Transcription elongation factor SPT5 (DRB| sensitivity-inducing factor large subunit) (DSIF large subunit) (Protein foggy) Length = 1084 Score = 29.3 bits (64), Expect = 4.5 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +1 Query: 13 PAPSTLASSRSPNPDPPACHPTSPLARSP 99 P PS +A SP+P P P +P A SP Sbjct: 930 PTPSPMAYQASPSPSPVGYSPMTPGAPSP 958
>NAGB_STAAW (P65513) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAS (Q6GBR8) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAR (Q6GJA0) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAN (P99125) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAM (P65512) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>NAGB_STAAC (Q5HIA6) Glucosamine-6-phosphate deaminase (EC 3.5.99.6)| (Glucosamine-6-phosphate isomerase) (GNPDA) (GlcN6P deaminase) Length = 252 Score = 28.9 bits (63), Expect = 5.9 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = +3 Query: 324 EEAAGITARHPAKVFSRMRDLLAKPFPY 407 +E G+TA HP M D+L K +PY Sbjct: 67 DEYVGLTASHPQSYHYYMDDMLFKQYPY 94
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 28.9 bits (63), Expect = 5.9 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -2 Query: 371 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 213 GE+ G D+G + EA + + G+ G G GD + GA HG Sbjct: 107 GEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHG 159
>BORG5_HUMAN (Q00587) Cdc42 effector protein 1 (Binder of Rho GTPases 5) (Serum| protein MSE55) Length = 391 Score = 28.9 bits (63), Expect = 5.9 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +1 Query: 1 GSRAPAPSTLASSRSP--NPDPPACHPTSPLARSP 99 G A P+T A+ +P NP PA PT P A P Sbjct: 240 GPAANPPATTANPPAPAANPSAPAATPTGPAANPP 274
>PCGF2_HUMAN (P35227) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) Length = 344 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +1 Query: 7 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 84 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>TOP2_TRYBB (P12531) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1221 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = -2 Query: 344 GDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREV 219 GD G AG A AVG RGE+ G G G RR V Sbjct: 1172 GDGGATAAGAAAAVGGRGEK---------KGPGRAGGVRRMV 1204
>PCGF2_MOUSE (P23798) Polycomb group RING finger protein 2 (DNA-binding protein| Mel-18) (RING finger protein 110) (Zinc finger protein 144) (Zfp-144) Length = 342 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 13/39 (33%) Frame = +1 Query: 7 RAPAPSTL--ASSRSPNP-----------DPPACHPTSP 84 +AP+P+TL SS P+P PPA HPTSP Sbjct: 262 KAPSPATLPATSSSLPSPATPSHGSPSSHGPPATHPTSP 300
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/28 (50%), Positives = 18/28 (64%) Frame = +1 Query: 4 SRAPAPSTLASSRSPNPDPPACHPTSPL 87 S+A PS SS SP+P PP HP +P+ Sbjct: 39 SQAGHPS---SSSSPSPGPPTKHPKTPM 63
>ATPL_AQUAE (O66564) ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein)| Length = 100 Score = 28.5 bits (62), Expect = 7.7 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%) Frame = -2 Query: 362 LGRVARGDA----GRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHGRDLEPL 195 + A G+A G L G +A+G G G+ +GH V G G AR G L+ L Sbjct: 16 IAMAAEGEASVAKGLLYLGAGLAIGLAGLGAGVGMGHAVRGT-QEGVARNPNAGGRLQTL 74
>BL1S3_HUMAN (Q6QNY0) Biogenesis of lysosome-related organelles complex-1| subunit 3 (BLOC subunit 3) Length = 202 Score = 28.5 bits (62), Expect = 7.7 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = +3 Query: 243 IAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPAKV 365 +A A++ + +R +AALA +RLA +AAG+ A H ++ Sbjct: 124 VAAAVSGVYRRAGRDVAALA--SRLAAAQAAGLAAAHSVRL 162 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.307 0.125 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 36,446,215 Number of Sequences: 219361 Number of extensions: 636533 Number of successful extensions: 4409 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 3518 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4356 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits)
