ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C ... 34 0.13
2I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C ... 34 0.13
3I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C ... 32 0.63
4I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C ... 32 0.63
5RNZ_CLOPE (Q8XKN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNa... 31 1.1

>I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4) (Piwi/argonaute family protein
           meIF2C4)
          Length = 861

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +3

Query: 36  GLGKKGQPIQLLANHYKVSVKPS*EFFNHYYVNLK 140
           GLG  G+PI+LLANH++V + P  + + HY V++K
Sbjct: 20  GLGTVGKPIRLLANHFQVQI-PKIDVY-HYDVDIK 52



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>I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4)
          Length = 861

 Score = 33.9 bits (76), Expect = 0.13
 Identities = 17/35 (48%), Positives = 26/35 (74%)
 Frame = +3

Query: 36  GLGKKGQPIQLLANHYKVSVKPS*EFFNHYYVNLK 140
           GLG  G+PI+LLANH++V + P  + + HY V++K
Sbjct: 20  GLGTVGKPIRLLANHFQVQI-PKIDVY-HYDVDIK 52



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>I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Piwi/argonaute family protein
           meIF2C1)
          Length = 857

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   PRRHIMARPAN-GLGKKGQPIQLLANHYKVSVKPS*EFFNHYYVNLK 140
           P + +   P   G+G  G+PI+LLAN+++V + P  + + HY V++K
Sbjct: 16  PLQQVFQAPRRPGIGTVGKPIKLLANYFEVDI-PKIDVY-HYEVDIK 60



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>I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein
           Q99)
          Length = 857

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   PRRHIMARPAN-GLGKKGQPIQLLANHYKVSVKPS*EFFNHYYVNLK 140
           P + +   P   G+G  G+PI+LLAN+++V + P  + + HY V++K
Sbjct: 16  PLQQVFQAPRRPGIGTVGKPIKLLANYFEVDI-PKIDVY-HYEVDIK 60



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>RNZ_CLOPE (Q8XKN1) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3|
           endonuclease)
          Length = 316

 Score = 30.8 bits (68), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 9   RHIMARPANGLGKKGQPIQLLANHYKVSVKPS*EFFNH 122
           +H+  + A  L KKGQ  +LL  H+  S+    EF N+
Sbjct: 256 KHMTFKEAANLAKKGQVKELLLTHFSPSINDPKEFINN 293


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,895,839
Number of Sequences: 219361
Number of extensions: 258463
Number of successful extensions: 844
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 80,573,946
effective HSP length: 22
effective length of database: 75,748,004
effective search space used: 1817952096
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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