ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46d07 |
|---|---|
| Clone Library Name | barley_pub |
>AP2B1_RAT (P62944) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 106 bits (264), Expect(2) = 9e-25 Identities = 53/64 (82%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 9e-25 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP2B1_MOUSE (Q9DBG3) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 106 bits (264), Expect(2) = 9e-25 Identities = 53/64 (82%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 9e-25 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP2B1_HUMAN (P63010) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) Length = 937 Score = 106 bits (264), Expect(2) = 9e-25 Identities = 53/64 (82%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+T KKGEI ELK ELN++ K+KRK+AVKKVIAAMTVGKDVSSLF DVVNCMQT+N Sbjct: 3 DSKYFTTNKKGEIFELKAELNNEKKEKRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 9e-25 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP1B1_RAT (P52303) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta large Length = 949 Score = 105 bits (261), Expect(2) = 2e-24 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 2e-24 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP1B1_HUMAN (Q10567) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 949 Score = 105 bits (261), Expect(2) = 2e-24 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 2e-24 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP1B1_MOUSE (O35643) AP-1 complex subunit beta-1 (Adapter-related protein| complex 1 beta-1 subunit) (Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1 subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit) (Clathrin assembly protein complex 1 beta larg Length = 943 Score = 105 bits (261), Expect(2) = 2e-24 Identities = 52/64 (81%), Positives = 59/64 (92%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSKYF+TTKKGEI ELK ELNS K+K+K+AVKKVIA+MTVGKDVS+LF DVVNCMQT+N Sbjct: 3 DSKYFTTTKKGEIFELKAELNSDKKEKKKEAVKKVIASMTVGKDVSALFPDVVNCMQTDN 62 Query: 418 LELK 429 LELK Sbjct: 63 LELK 66 Score = 26.2 bits (56), Expect(2) = 2e-24 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 63 LELKKLVYLYLMNYAKSQPDMAI 85
>AP2B1_BOVIN (P63009) AP-2 complex subunit beta-1 (Adapter-related protein| complex 2 beta-1 subunit) (Beta-adaptin) (Plasma membrane adaptor HA2/AP2 adaptin beta subunit) (Clathrin assembly protein complex 2 beta large chain) (AP105B) (Fragment) Length = 236 Score = 64.7 bits (156), Expect(2) = 2e-12 Identities = 32/34 (94%), Positives = 33/34 (97%) Frame = +1 Query: 328 AVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELK 429 AVKKVIAAMTVGKDVSSLF DVVNCMQT+NLELK Sbjct: 1 AVKKVIAAMTVGKDVSSLFPDVVNCMQTDNLELK 34 Score = 26.2 bits (56), Expect(2) = 2e-12 Identities = 14/23 (60%), Positives = 17/23 (73%), Gaps = 1/23 (4%) Frame = +3 Query: 417 LGAEKLVYLYLITMLKS-PDLAI 482 L +KLVYLYL+ KS PD+AI Sbjct: 31 LELKKLVYLYLMNYAKSQPDMAI 53
>AP1B1_SCHPO (O43079) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin| assembly protein large beta-1 chain) (Clathrin assembly protein complex 1 beta-1 large chain) Length = 683 Score = 63.9 bits (154), Expect(2) = 5e-12 Identities = 35/63 (55%), Positives = 43/63 (68%) Frame = +1 Query: 241 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 420 S F KK E EL++ L SQY +R DAVK+ IAAMTVGKDVSSLF DV+ + T ++ Sbjct: 8 SSRFKAFKKSETSELQKGLVSQYAYERIDAVKRTIAAMTVGKDVSSLFPDVLKNLATRDI 67 Query: 421 ELK 429 LK Sbjct: 68 TLK 70 Score = 25.4 bits (54), Expect(2) = 5e-12 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +3 Query: 414 ELGAEKLVYLYLITMLKS-PDLAI 482 ++ +KLVYLYLI K+ PDL I Sbjct: 66 DITLKKLVYLYLINYAKTHPDLCI 89
>AP1B1_YEAST (P36000) AP-1 complex subunit beta-1 (Beta(1)-adaptin) (Clathrin| assembly protein large beta-1 chain) (Clathrin assembly protein complex 1 beta-1 large chain) Length = 726 Score = 60.5 bits (145), Expect = 2e-09 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 1/69 (1%) Frame = +1 Query: 265 KGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELKN-*YT 441 KGE+ EL+ L SQY RKDA+KK I MT+GKDVSSLF DV+ + T ++E K Y Sbjct: 25 KGELSELRTGLVSQYPQTRKDAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQKKLVYL 84 Query: 442 YTSSLC*SH 468 Y + +H Sbjct: 85 YVMNYAETH 93
>AP2B_SCHPO (O43005) AP-2 complex subunit beta (Beta-adaptin) (Clathrin| assembly protein large beta chain) (Clathrin assembly protein complex 2 beta large chain) Length = 677 Score = 47.4 bits (111), Expect = 2e-05 Identities = 24/63 (38%), Positives = 38/63 (60%) Frame = +1 Query: 241 SKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENL 420 S +FS+T + + + +KR A+KK IA ++ G D+SSLF V++ M++ NL Sbjct: 5 SSHFSSTAADLLAVFSSDNKDKSANKRISALKKAIAGISYGYDMSSLFPSVISSMESNNL 64 Query: 421 ELK 429 ELK Sbjct: 65 ELK 67
>AP3B1_CANFA (Q7YRF1) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1091 Score = 44.7 bits (104), Expect = 1e-04 Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = +1 Query: 175 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 351 AGGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 AGGGEATELGQEATSTVSPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 352 MTVGKDVSSLFTDVVNCMQTENLELK 429 + GK+ S LF VV + ++N+E+K Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIK 95
>AP3B1_MOUSE (Q9Z1T1) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1105 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = +1 Query: 175 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 351 +GGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 SGGGEAAELGQEATSTISPSGAFGLFSSDWKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 352 MTVGKDVSSLFTDVVNCMQTENLELK 429 + GK+ S LF VV + ++N+E+K Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIK 95
>AP3B1_HUMAN (O00203) AP-3 complex subunit beta-1 (Adapter-related protein| complex 3 beta-1 subunit) (Beta3A-adaptin) (Adaptor protein complex AP-3 beta-1 subunit) (Clathrin assembly protein complex 3 beta-1 large chain) Length = 1094 Score = 43.5 bits (101), Expect = 3e-04 Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 1/86 (1%) Frame = +1 Query: 175 AGGGDRCVFGR*ARRG-DMSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAA 351 +GGG+ G+ A SG + S KK E +LK+ L S + DA+K+++ Sbjct: 12 SGGGEATELGQEATSTISPSGAFGLFSSDLKKNE--DLKQMLESNKDSAKLDAMKRIVGM 69 Query: 352 MTVGKDVSSLFTDVVNCMQTENLELK 429 + GK+ S LF VV + ++N+E+K Sbjct: 70 IAKGKNASELFPAVVKNVASKNIEIK 95
>AP3B2_MOUSE (Q9JME5) AP-3 complex subunit beta-2 (Adapter-related protein| complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) Length = 1082 Score = 37.0 bits (84), Expect = 0.027 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Frame = +1 Query: 232 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 402 GHD FS+ K +LKE L++ + +A+K+++A + GK+ S LF VV Sbjct: 23 GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81 Query: 403 MQTENLELK 429 + +N+E+K Sbjct: 82 VACKNIEVK 90
>AP3B2_HUMAN (Q13367) AP-3 complex subunit beta-2 (Adapter-related protein| complex 3 beta-2 subunit) (Beta3B-adaptin) (Adaptor protein complex AP-3 beta-2 subunit) (AP-3 complex beta-2 subunit) (Clathrin assembly protein complex 3 beta-2 large chain) (Neu Length = 1082 Score = 37.0 bits (84), Expect = 0.027 Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 3/69 (4%) Frame = +1 Query: 232 GHDSK---YFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNC 402 GHD FS+ K +LKE L++ + +A+K+++A + GK+ S LF VV Sbjct: 23 GHDPASGGIFSSDYKRH-DDLKEMLDTNKDSLKLEAMKRIVAMIARGKNASDLFPAVVKN 81 Query: 403 MQTENLELK 429 + +N+E+K Sbjct: 82 VACKNIEVK 90
>RNZ_BRAJA (Q89NF8) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 301 Score = 32.3 bits (72), Expect = 0.67 Identities = 22/61 (36%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Frame = -1 Query: 194 HRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLD--SARGSQAGVRACESYGDQTDRE 21 H P A GV DG LR GRP + DG +D G G R GD E Sbjct: 157 HLLPDRLASLGVPDGPLRGELAQGRPVVIEDGRTIDPEDVLGPATGGRKLVVIGDTETTE 216 Query: 20 G 18 G Sbjct: 217 G 217
>AP3B_ASHGO (Q759E2) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 781 Score = 31.6 bits (70), Expect = 1.2 Identities = 17/67 (25%), Positives = 39/67 (58%), Gaps = 3/67 (4%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGK---DVSSLFTDVVNCMQ 408 +S YF +K + L LNS+Y + +D +K+V++ M G ++ + F D+V + Sbjct: 32 ESSYFHYSKSIDSESLPGLLNSRYTREVRDGMKRVMSLMGSGDSSIELETHFADIVKNIG 91 Query: 409 TENLELK 429 +++++++ Sbjct: 92 SDDVKVR 98
>AP3B_SCHPO (O13939) AP-3 complex subunit beta (Beta-adaptin) (Adapter-related| protein complex 3 beta subunit) (Clathrin assembly protein large beta chain) (Clathrin assembly protein complex 3 beta large chain) Length = 745 Score = 31.2 bits (69), Expect = 1.5 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 280 ELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTENLELK 429 +L LNS + +A+ ++A M G+++S F DVV + +EN E++ Sbjct: 37 DLLRLLNSNSDAGKLEAINFILAQMMHGENMSLYFPDVVKLVASENPEIR 86
>ATIN_BHV1P (P30020) Alpha trans-inducing protein (Alpha-TIF)| Length = 504 Score = 31.2 bits (69), Expect = 1.5 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = -1 Query: 137 ARGGGRPACLRDGMGLDSARGSQAGVRAC 51 ARGG P+ +R G+GL ARGS AC Sbjct: 439 ARGGPGPSPVRSGLGLSRARGSPGPGPAC 467
>ICP4_EHV1V (Q6S6U0) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -1 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1K (P17473) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -1 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>ICP4_EHV1B (P28925) Trans-acting transcriptional protein ICP4 (155 kDa| immediate-early protein) Length = 1487 Score = 30.8 bits (68), Expect = 2.0 Identities = 15/42 (35%), Positives = 19/42 (45%) Frame = -1 Query: 224 SPRRAYLPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDG 99 +PR + N ++P A PG GG R A G P R G Sbjct: 226 TPRPRHSQNAAKTPSAAGSPGPSSGGDRPAAGAATPKSCRSG 267
>AP2B_YEAST (P27351) AP-2 complex subunit beta (Beta-adaptin) (Clathrin| assembly protein large beta chain) (Clathrin assembly protein complex 2 beta large chain) Length = 700 Score = 30.0 bits (66), Expect = 3.3 Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 7/71 (9%) Frame = +1 Query: 238 DSKYFSTTKKGEI-PELKEELNSQYKD---KRKDAVKKVIAAMTVGK--DVSSLFTDVVN 399 D K F+ K EI +L+ ++K +RK+A++K+IA + +G ++S LF++++ Sbjct: 3 DQKVFARYKANEIVTDLQHFGVKKFKSNITRRKNALRKIIANLVLGNYGEMSVLFSELLK 62 Query: 400 CMQTE-NLELK 429 Q E +LE+K Sbjct: 63 FWQIEDDLEVK 73
>KINH_STRPU (P35978) Kinesin heavy chain| Length = 1031 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/26 (46%), Positives = 13/26 (50%) Frame = -1 Query: 194 HRSPPPAAEPGVRDGGLRYARGGGRP 117 H P P G+R GG RGGG P Sbjct: 925 HPPPSPGGSTGIRGGGYSGIRGGGSP 950
>CCNA2_CHICK (P43449) Cyclin-A2 (Cyclin-A)| Length = 395 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Frame = -1 Query: 206 LPNTHRSPPPAAEPGVRDGGLR--YARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 33 +P ++PPPAA V G LR AR G R+G G +A G Q + Y D+ Sbjct: 11 VPPAAKAPPPAAGTRVALGLLRGGPARPGPAAQAARNGEGRGAAAGQQQ--QPFSVYVDE 68 Query: 32 TDRE 21 D E Sbjct: 69 PDEE 72
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 29.3 bits (64), Expect = 5.7 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = -1 Query: 206 LPNTHRSPPPAAEPGVRDGGLRYARGGGRP--ACLRDGMGLDSARGSQAGVRACESYGDQ 33 LP PPP P R RGGG P R G A G++A E ++ Sbjct: 284 LPPPPPPPPPPQPPPAGGSARRRRRGGGPPGRGGRRRGGKRRRAEGTEAAAADAE---EE 340 Query: 32 TDREGDDSGD 3 D +GD+ D Sbjct: 341 EDGDGDEDED 350
>U269_DEIRA (Q9RXP1) Protein DR0269| Length = 322 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Frame = -1 Query: 164 GVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQT---DREGDDSG 6 G R G RGG RP R G G D RG G R E G+++ DR GD G Sbjct: 138 GFRGGDRGGDRGGFRPREDRGGFGGDRDRG---GFRPREDRGERSFGGDRGGDRGG 190
>VCOM_ADEM1 (O10442) Minor core protein (Protein V) (pV)| Length = 228 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/40 (42%), Positives = 20/40 (50%) Frame = +3 Query: 66 RLAPPRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 185 R PP V+ HP + RPPA A I+ P R RRR Sbjct: 130 RAVPPVGVRYHPSIEVARPPA------ARISPPRRRRRRR 163
>RENBP_PIG (P17560) N-acylglucosamine 2-epimerase (EC 5.1.3.8) (GlcNAc| 2-epimerase) (N-acetyl-D-glucosamine 2-epimerase) (AGE) (Renin-binding protein) (RnBP) Length = 402 Score = 29.3 bits (64), Expect = 5.7 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%) Frame = +3 Query: 60 HTRLAPPRRVQSHPIAQTGRPPATAR--ISEASITNPGLRSRRR*PVCIWQVGSPGRYER 233 H R+APP + + + + GRP R SE T +W+V + RY+ Sbjct: 94 HARVAPPEKKCAFVLTRDGRPVKVQRSIFSECFYTMAMNE--------LWRVTAEARYQS 145 Query: 234 ARLQVL--LHHQKGGDPRAQGGAQLP 305 + ++ + H DP G QLP Sbjct: 146 EAVDMMDQIVHWVREDPSGLGRPQLP 171
>RRF_WIGBR (Q8D2G5) Ribosome recycling factor (Ribosome-releasing factor)| (RRF) Length = 185 Score = 28.9 bits (63), Expect = 7.5 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 3/38 (7%) Frame = +1 Query: 319 RKDA---VKKVIAAMTVGKDVSSLFTDVVNCMQTENLE 423 R+DA +KK+I A T+GKD F +V+ + +E Sbjct: 132 RRDANEKIKKLIKAKTIGKDEDKKFQEVIQNLTNSRIE 169
>KCNC4_MOUSE (Q8R1C0) Potassium voltage-gated channel subfamily C member 4| (Voltage-gated potassium channel subunit Kv3.4) Length = 628 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/45 (35%), Positives = 19/45 (42%) Frame = -1 Query: 167 PGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAGVRACESYGDQ 33 PG R L GGGRP G G + G G CE + D+ Sbjct: 58 PGTRLAWLADPDGGGRPESDGGGAGSSGSSGGGGGGGGCEFFFDR 102
>LEA2_CICAR (O49817) Late embryogenesis abundant protein 2 (CapLEA-2)| Length = 155 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/51 (29%), Positives = 23/51 (45%) Frame = +1 Query: 226 MSGHDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSS 378 M+ HD Y + KG E ++ +DK + A +K A KD +S Sbjct: 1 MTSHDQSYRAGEAKGRTEEKTNQMIGNIEDKAQAAKEKAQQAAQTAKDKTS 51
>ATRIP_DROME (Q9VVN4) ATR-interacting protein mus304 (Mutagen-sensivite protein| 304) Length = 846 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/64 (23%), Positives = 31/64 (48%) Frame = +1 Query: 238 DSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTEN 417 DSK + K GE+ L++EL + + ++K+ A +D + + + ++ Sbjct: 201 DSKERNEIKSGEVSLLRDELKHLRQQLQASKMEKLALADETNRDCNKKVAEAAKQIAAKD 260 Query: 418 LELK 429 +ELK Sbjct: 261 IELK 264
>AP3D_DROME (P54362) AP-3 complex subunit delta (Delta-adaptin) (Garnet| protein) (Delta adaptin subunit of AP-3) Length = 1034 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/75 (25%), Positives = 34/75 (45%) Frame = +1 Query: 235 HDSKYFSTTKKGEIPELKEELNSQYKDKRKDAVKKVIAAMTVGKDVSSLFTDVVNCMQTE 414 +++KY ST I E+K+EL + +AV K+ +G D+S +++ M + Sbjct: 32 NEAKYISTC----IEEIKQELRQDNISVKCNAVAKLTYIQMLGYDISWAGFNIIEVMSSS 87 Query: 415 NLELKN*YTYTSSLC 459 K +S C Sbjct: 88 RFTCKRIGYLAASQC 102
>ROCK1_RABIT (O77819) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (cAMP-dependent protein kinase ROCK-I) (CePKA) (Corneal epithelial Rho-associated-Ser/Thr kinase 1) (HEB Length = 1354 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +1 Query: 244 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 342 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878
>ROCK1_HUMAN (Q13464) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (NY-REN-35 antigen) Length = 1354 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +1 Query: 244 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 342 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 850 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 878
>NELFA_HUMAN (Q9H3P2) Negative elongation factor A (NELF-A) (Wolf-Hirschhorn| syndrome candidate 2 protein) Length = 549 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = -1 Query: 269 PFLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVR 156 P L YL S P + P +Y+P++ P P++ R Sbjct: 338 PALPSTSYLPSTPSVVPASSYIPSSETPPAPSSREASR 375
>MLL3_HUMAN (Q8NEZ4) Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog| (Histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3) (EC 2.1.1.43) (Homologous to ALR protein) Length = 4911 Score = 28.5 bits (62), Expect = 9.7 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Frame = -1 Query: 233 PLISPRRAYLPNTHRSP--PPAAEPGVRDGGLRYARGGG 123 P + PR A P R P P A G+R G R+ GG Sbjct: 2449 PPLGPRYAVFPKDQRGPYPPDVASMGMRPHGFRFGFPGG 2487
>COTE1_HUMAN (P81408) COTE1 protein| Length = 669 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +3 Query: 3 ISTVVSLPICLISITLARTHTRLAPPRRVQS--HPIAQTGRPPA 128 I T+ ++ C+ +L HT+LAP R V P+ T PPA Sbjct: 187 ICTLSAIVCCIQIFSLDLVHTQLAPERSVSGPLGPLGCTSPPPA 230
>DPOLA_ORYSA (O48653) DNA polymerase alpha catalytic subunit (EC 2.7.7.7)| Length = 1534 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/46 (30%), Positives = 23/46 (50%) Frame = -1 Query: 266 FLVVEKYLESCPLISPRRAYLPNTHRSPPPAAEPGVRDGGLRYARG 129 F+V +K+ S S +R P+T + P A+P + D G +G Sbjct: 852 FIVPDKFARSKEFNSTKRKMNPDTEAARPDEADPSIDDEGHHVDQG 897
>TARSH_HUMAN (Q7Z7G0) Target of Nesh-SH3 precursor (Tarsh) (Nesh-binding| protein) (NeshBP) (ABI gene family member 3-binding protein) Length = 1075 Score = 28.5 bits (62), Expect = 9.7 Identities = 16/36 (44%), Positives = 18/36 (50%) Frame = +3 Query: 78 PRRVQSHPIAQTGRPPATARISEASITNPGLRSRRR 185 PRR P TG+P + IS IT P LRS R Sbjct: 716 PRRKPLPPNNVTGKPGSAGIISSGPITTPPLRSTPR 751
>ROCK1_BOVIN (Q8MIT6) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 441 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +1 Query: 244 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 342 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 257 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 285
>ROCK1_PANTR (P61584) Rho-associated protein kinase 1 (EC 2.7.11.1)| (Rho-associated, coiled-coil-containing protein kinase 1) (p160 ROCK-1) (p160ROCK) (Fragment) Length = 1003 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/33 (39%), Positives = 23/33 (69%) Frame = +1 Query: 244 KYFSTTKKGEIPELKEELNSQYKDKRKDAVKKV 342 +YFST K ++ ELKEE+ ++K ++ +KK+ Sbjct: 499 QYFSTLYKTQVKELKEEI----EEKNRENLKKI 527
>NOLA1_HUMAN (Q9NY12) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar| protein family A member 1) (snoRNP protein GAR1) Length = 217 Score = 28.5 bits (62), Expect = 9.7 Identities = 19/48 (39%), Positives = 20/48 (41%) Frame = -1 Query: 206 LPNTHRSPPPAAEPGVRDGGLRYARGGGRPACLRDGMGLDSARGSQAG 63 LP P P E G GG R RGGGR R G RG + G Sbjct: 152 LPLQRFLPRPPGEKGPPRGGGRGGRGGGRGGGGRGGGRGGGFRGGRGG 199 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,374,646 Number of Sequences: 219361 Number of extensions: 1154302 Number of successful extensions: 4542 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 4254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4538 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
