ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46d05 |
|---|---|
| Clone Library Name | barley_pub |
>IMB1_SCHPO (O13864) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 863 Score = 56.6 bits (135), Expect = 3e-08 Identities = 32/96 (33%), Positives = 49/96 (51%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 M+ + L SPD N+R A ++ + +++ L+ E +ND P R AG+ Sbjct: 1 MNAGEFLAQTLSPDANVRLNAEKQLENAARTDFAQYMVLLAQELANDNSMPYIRMAAGLA 60 Query: 319 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLL 426 LKN++ A++ ARK Q W SL IK Q+K L Sbjct: 61 LKNAITAREEARKLEYQQLWQSLPVEIKQQVKSLAL 96
>IMB1_MOUSE (P70168) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Pore targeting complex 97 kDa subunit) (PTAC97) (SCG) Length = 876 Score = 53.1 bits (126), Expect = 4e-07 Identities = 34/111 (30%), Positives = 57/111 (51%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 M++ IL SPD AA +++ +NLP FL+ LS +N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 319 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIH*DLRRVMPADSSQ 471 +KNSL +KD K Q+W+++D + + ++K +L P+ +SQ Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111
>IMB1_HUMAN (Q14974) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) (Importin 90) Length = 876 Score = 53.1 bits (126), Expect = 4e-07 Identities = 34/111 (30%), Positives = 57/111 (51%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 M++ IL SPD AA +++ +NLP FL+ LS +N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 319 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIH*DLRRVMPADSSQ 471 +KNSL +KD K Q+W+++D + + ++K +L P+ +SQ Sbjct: 61 IKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 111
>IMB_DROME (O18388) Importin beta subunit (Karyopherin beta-4 subunit)| (Protein ketel) Length = 884 Score = 47.4 bits (111), Expect = 2e-05 Identities = 33/111 (29%), Positives = 49/111 (44%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 M + IL SPD N +A ++Q NLP FL +LS N +R AG+ Sbjct: 7 MQLIAILEKTVSPDKNELLSAKNFLEQAAASNLPEFLKALSEILVNTANSAVARMAAGLQ 66 Query: 319 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIH*DLRRVMPADSSQ 471 LKN L +KD + +W I+ IK ++L P+ ++Q Sbjct: 67 LKNHLTSKDEKVSQQYQDRWHQFPSEIRELIKNNILAALGTENTRPSCAAQ 117
>IMB1_YEAST (Q06142) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Importin 95) Length = 861 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 1/86 (1%) Frame = +1 Query: 172 SPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGIILKNSLDAKDSA 351 SPD N+R + +K+ N F S ++ E R LA + LKN L +KDS Sbjct: 16 SPDQNIRLTSETQLKKLSNDNFLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 Query: 352 RKELLIQQWVS-LDHSIKSQIKESLL 426 + + Q+W++ + K+QIK + L Sbjct: 76 KTQQFAQRWITQVSPEAKNQIKTNAL 101
>IMB1_RAT (P52296) Importin beta-1 subunit (Karyopherin beta-1 subunit)| (Nuclear factor P97) Length = 875 Score = 42.7 bits (99), Expect = 5e-04 Identities = 31/111 (27%), Positives = 55/111 (49%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 M++ IL SPD AA +++ +NLP FL+ LS +N +R AG+ Sbjct: 1 MELITILEKTVSPDRLELEAAQKFLERAAVENLPTFLVELSRVLANPGNSQVARVAAGLQ 60 Query: 319 LKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIH*DLRRVMPADSSQ 471 ++ L +KD K Q+W+++D + + ++K +L P+ +SQ Sbjct: 61 IR-LLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPSSASQ 110
>TNPO1_MOUSE (Q8BFY9) Transportin-1 (Importin beta-2) (Karyopherin beta-2)| Length = 890 Score = 35.8 bits (81), Expect = 0.059 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +1 Query: 136 VMDITQILLAAQSPDGNLRSAAGANIKQF-QEQNLPNFLLSLSVESSNDERPPESRRLAG 312 + I Q+L +QSPD ++ ++Q Q + N+L+ + + +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 313 IILKNSLDA 339 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>TNPO1_HUMAN (Q92973) Transportin-1 (Importin beta-2) (Karyopherin beta-2) (M9| region interaction protein) (MIP) Length = 890 Score = 35.8 bits (81), Expect = 0.059 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 1/69 (1%) Frame = +1 Query: 136 VMDITQILLAAQSPDGNLRSAAGANIKQF-QEQNLPNFLLSLSVESSNDERPPESRRLAG 312 + I Q+L +QSPD ++ ++Q Q + N+L+ + + +++ P +R L+G Sbjct: 12 LQQILQLLKESQSPDTTIQRTVQQKLEQLNQYPDFNNYLIFVLTKLKSEDEP--TRSLSG 69 Query: 313 IILKNSLDA 339 +ILKN++ A Sbjct: 70 LILKNNVKA 78
>PTPRV_RAT (Q64612) Receptor-type tyrosine-protein phosphatase V precursor (EC| 3.1.3.48) (Embryonic stem cell protein-tyrosine phosphatase) (ES cell phosphatase) (Osteotesticular protein-tyrosine phosphatase) (OST-PTP) Length = 1711 Score = 32.0 bits (71), Expect = 0.85 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = -2 Query: 277 HSMTPPTRIGGSWEDSAPGTA*CWLLLLSEGYHLETEQLA 158 HS P R+ SW D APG + LLL YHLE++ LA Sbjct: 137 HSAGSPARLEASWSD-APGDQDSYQLLL---YHLESQTLA 172
>TNPO2_HUMAN (O14787) Transportin-2 (Karyopherin beta-2b)| Length = 897 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +1 Query: 136 VMDITQILLAAQSPDGNLRSAAGANIKQFQE-QNLPNFLLSLSVESSNDERPPESRRLAG 312 + + Q+L +QSP+ + +KQ + + N+L+ + +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 313 IILKNSLDA 339 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>TNPO2_MOUSE (Q99LG2) Transportin-2 (Karyopherin beta-2b)| Length = 887 Score = 31.2 bits (69), Expect = 1.4 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%) Frame = +1 Query: 136 VMDITQILLAAQSPDGNLRSAAGANIKQFQE-QNLPNFLLSLSVESSNDERPPESRRLAG 312 + + Q+L +QSP+ + +KQ + + N+L+ + +++ P +R L+G Sbjct: 10 LQQVLQLLKDSQSPNTATQRIVQDKLKQLNQFPDFNNYLIFVLTRLKSEDEP--TRSLSG 67 Query: 313 IILKNSLDA 339 +ILKN++ A Sbjct: 68 LILKNNVKA 76
>FAS2_YEAST (P19097) Fatty acid synthase alpha subunit (EC 2.3.1.86) [Includes:| Acyl carrier; 3-oxoacyl-[acyl-carrier-protein] reductase (EC 1.1.1.100) (Beta-ketoacyl reductase); 3-oxoacyl-[acyl-carrier-protein] synthase (EC 2.3.1.41) (Beta-ketoacyl synth Length = 1887 Score = 30.8 bits (68), Expect = 1.9 Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 2/108 (1%) Frame = +1 Query: 142 DITQIL--LAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGI 315 D+T++ ++AQ+ ++ S+ ++ +L FL ESS + P ++ +LAG+ Sbjct: 546 DLTRVYKAISAQADKQDISSSTRVEFEKLYS-DLMKFL-----ESSKEIDPSQTTQLAGM 599 Query: 316 ILKNSLDAKDSARKELLIQQWVSLDHSIKSQIKESLLIH*DLRRVMPA 459 ++++LD KDS ++ + ++ ++ S I + LR+ PA Sbjct: 600 DVEDALD-KDSTKEVASLPNKSTISKTVSSTIPRETIPFLHLRKKTPA 646
>IMB5_YEAST (P53067) Importin beta-5 subunit (Karyopherin beta-5 subunit) (114| kDa karyopherin) Length = 1004 Score = 30.4 bits (67), Expect = 2.5 Identities = 17/62 (27%), Positives = 32/62 (51%) Frame = +1 Query: 139 MDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPPESRRLAGII 318 MDI ++++ AQS D + R A + Q+ + + +L+ + E ESR+ A + Sbjct: 1 MDINELIIGAQSADKHTREVAETQLLQWCDSDASQVFKALANVALQHEASLESRQFALLS 60 Query: 319 LK 324 L+ Sbjct: 61 LR 62
>DPO4_THETN (P58965) DNA polymerase IV (EC 2.7.7.7) (Pol IV)| Length = 384 Score = 30.0 bits (66), Expect = 3.2 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = +1 Query: 208 NIKQFQEQNLPNFLLSLSVESSN-----DERPPESRRLAGIILKNSLDAKDSARKELLIQ 372 ++ + ++NL VE N DERP E+ R I K KD+ KELLIQ Sbjct: 199 DLLKLPQENLIELFGKTGVEIYNRIRGIDERPVETMREIKSIGKEKTLEKDTKNKELLIQ 258 Query: 373 QWVSLDHSIKSQ-IKESL 423 + + IKE L Sbjct: 259 HLKEFSEIVSEELIKERL 276
>I28RA_HUMAN (Q8IU57) Interleukin-28 receptor alpha chain precursor| (IL-28R-alpha) (IL-28RA) (Cytokine receptor family 2 member 12) (Cytokine receptor class-II member 12) (CRF2-12) (Interferon lambda receptor 1) (IFN-lambda R1) (Likely interleukin or cyto Length = 520 Score = 27.7 bits (60), Expect(2) = 3.3 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = -3 Query: 144 IHDCCTCPEERICRGMLPRSLARLPASQ 61 ++D CP++ + RG+ P R PA+Q Sbjct: 287 VNDLFLCPQKELTRGVRPTPRVRAPATQ 314 Score = 20.8 bits (42), Expect(2) = 3.3 Identities = 8/19 (42%), Positives = 11/19 (57%) Frame = -2 Query: 82 RSPARLPDKWKKTAEEEGE 26 R+PA +WKK E+ E Sbjct: 309 RAPATQQTRWKKDLAEDEE 327
>AVE3_AVESA (P80356) Avenin-3 precursor (Prolamin)| Length = 220 Score = 29.6 bits (65), Expect = 4.2 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 3/39 (7%) Frame = -3 Query: 438 ILVYQQ*LLNLRFDRVIQADPLLN---QQLLPCRIFCVQ 331 IL QQ LL + ++Q PLL QQL PCR F VQ Sbjct: 37 ILQQQQMLLQQQQQMLLQQQPLLQVLQQQLNPCRQFLVQ 75
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 29.6 bits (65), Expect = 4.2 Identities = 15/40 (37%), Positives = 20/40 (50%) Frame = -3 Query: 177 WRLSS*QNLSDIHDCCTCPEERICRGMLPRSLARLPASQT 58 WRLSS + D + C EER GM+P + P + T Sbjct: 267 WRLSSGEERKDCLEECGRKEERTLPGMVPEDITGSPETLT 306
>GUX1_PENJA (Q06886) Exoglucanase 1 precursor (EC 3.2.1.91) (Exoglucanase I)| (Exocellobiohydrolase I) (1,4-beta-cellobiohydrolase) Length = 537 Score = 29.3 bits (64), Expect = 5.5 Identities = 15/36 (41%), Positives = 20/36 (55%) Frame = -3 Query: 207 GSCC*AKVTIWRLSS*QNLSDIHDCCTCPEERICRG 100 GSCC A++ IW +S N H C T P + +C G Sbjct: 230 GSCC-AEMDIWEANSISNAVTPHPCDT-PSQTMCTG 263
>RPOC1_EMIHU (Q4G3A6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) Length = 609 Score = 28.9 bits (63), Expect = 7.2 Identities = 21/74 (28%), Positives = 30/74 (40%) Frame = +1 Query: 112 SFFWAGATVMDITQILLAAQSPDGNLRSAAGANIKQFQEQNLPNFLLSLSVESSNDERPP 291 +F W +D+T+ +Q+ GNL GA+IK Q SS D + Sbjct: 547 TFIWVRCNNVDLTEDETCSQTQSGNLILTHGADIKSKQ-------------SSSQDTKTK 593 Query: 292 ESRRLAGIILKNSL 333 R G IL N + Sbjct: 594 YIRTTPGRILLNEI 607
>KPYK_TRYBO (Q27788) Pyruvate kinase (EC 2.7.1.40) (PK)| Length = 498 Score = 28.9 bits (63), Expect = 7.2 Identities = 10/32 (31%), Positives = 19/32 (59%) Frame = -3 Query: 201 CC*AKVTIWRLSS*QNLSDIHDCCTCPEERIC 106 CC +VT+W +++ + + ++ PEE IC Sbjct: 350 CCETQVTMWNMAAFEAIKNLQSFPLIPEEAIC 381 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,365,142 Number of Sequences: 219361 Number of extensions: 1065175 Number of successful extensions: 3402 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 3317 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3400 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3188886965 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
