ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46d03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 246 bits (124), Expect = 5e-62 Identities = 174/191 (91%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 ||||||||||||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 401 gagatcgacgaggacctgcacagccgccagctcgccgtctatggccgcgagaccatgaag 460 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgca 397 | ||||||| ||||||||||||||| || ||||||||||| ||||| || || |||||| Sbjct: 461 ccgctcttcggctccaacgtcctcgtctctggactccagggtctcggtgctgagatcgca 520 Query: 398 nagaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggag 457 |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct: 521 aagaaccttgtccttgcgggtgtcaagtctgtaaccttgcatgatgatggtaatgtggag 580 Query: 458 ctatgggactt 468 || |||||||| Sbjct: 581 ctgtgggactt 591 Score = 73.8 bits (37), Expect = 5e-10 Identities = 74/85 (87%), Gaps = 1/85 (1%) Strand = Plus / Plus Query: 141 tcgggctcatcggcggcgtcgcgcactatatgctccctcggaaacgggagaccgtcgcca 200 |||||||| |||||| |||||||| ||||||||| || ||||| ||||||| ||||||| Sbjct: 250 tcgggctcctcggcg-cgtcgcgcgctatatgcttccccggaagcgggagatcgtcgccg 308 Query: 201 gcgaggtcgagaaccagcagaagaa 225 ||||||||||| || ||||||||| Sbjct: 309 gcgaggtcgaggacttgcagaagaa 333
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 240 bits (121), Expect = 3e-60 Identities = 189/212 (89%) Strand = Plus / Plus Query: 257 gccatggcagggaggcccacggagatcgacgaggacctccacagccgccagctcgccgta 316 ||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| Sbjct: 285 gccatggcagggagggggaacgagatcgacgaggacctgcacagccgccagctcgccgtc 344 Query: 317 tacggccgcgagacaatgaagcgtctcttcgcctccaacgtcctcgtatccggactccag 376 || || |||||||| |||||||| ||||||| ||||||||||||||| || ||||||||| Sbjct: 345 tatgggcgcgagaccatgaagcgcctcttcggctccaacgtcctcgtctctggactccag 404 Query: 377 ggcctcggcgccgaaatcgcanagaaccttgtccttgctggtgtcaagtctgtaactttg 436 || ||||| || || |||||| |||||||||||||||| ||||||||||||||||| ||| Sbjct: 405 ggtctcggtgctgagatcgcaaagaaccttgtccttgcgggtgtcaagtctgtaaccttg 464 Query: 437 catgatgatggtaatgtggagctatgggactt 468 |||||||||||||| |||||||| |||||||| Sbjct: 465 catgatgatggtaacgtggagctgtgggactt 496 Score = 99.6 bits (50), Expect = 8e-18 Identities = 132/160 (82%), Gaps = 12/160 (7%) Strand = Plus / Plus Query: 75 cgctggatctggcgcggcagctcccgccggccgcctactactactgcctgcttttcgcgg 134 ||||||||||| |||||||||||||| ||||||| ||||||| ||||||| ||||| | Sbjct: 82 cgctggatctgacgcggcagctcccggcggccgcgtactact---gcctgctcttcgctg 138 Query: 135 cggcgg---------tcgggctcatcggcggcgtcgcgcactatatgctccctcggaaac 185 || ||| |||||||| ||||||||||||||| ||||||||| || ||||| | Sbjct: 139 cgtcggcggctgtcctcgggctcctcggcggcgtcgcgcgctatatgcttccccggaagc 198 Query: 186 gggagaccgtcgccagcgaggtcgagaaccagcagaagaa 225 |||||| ||||||| ||||||||||| || ||||||||| Sbjct: 199 gggagatcgtcgccggcgaggtcgaggacttgcagaagaa 238
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 222 bits (112), Expect = 8e-55 Identities = 171/191 (89%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 438 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 497 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgca 397 || ||||||||||||||||||||||| || || ||| | |||||||||||||| ||||| Sbjct: 498 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcgcc 557 Query: 398 nagaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggag 457 |||||||||||||||| ||||||||||| ||||| ||||| ||||||| ||||||||| Sbjct: 558 aagaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatgacaatgtggag 617 Query: 458 ctatgggactt 468 ||||||||||| Sbjct: 618 ctatgggactt 628 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 225 ctggatctgacgcggcagctctcgccggctgcct 258
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 300055 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 299349 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatgacaatgtggagc 299290 Query: 459 tatgggactt 468 |||||||||| Sbjct: 299289 tatgggactt 299280 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 300172 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 300113 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 300112 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 300055 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 299349 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatgacaatgtggagc 299290 Query: 459 tatgggactt 468 |||||||||| Sbjct: 299289 tatgggactt 299280 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 300382 ctggatctgacgcggcagctctcgccggctgcct 300349
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Plus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 4821 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 4880 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 4881 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 4938 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Plus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 5644 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatgacaatgtggagc 5703 Query: 459 tatgggactt 468 |||||||||| Sbjct: 5704 tatgggactt 5713 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Plus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 4611 ctggatctgacgcggcagctctcgccggctgcct 4644
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 147 bits (74), Expect = 4e-32 Identities = 107/118 (90%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| ||||||||||||||||||||||||||||| || ||||||||||| |||||| Sbjct: 7490 gagatcgatgaggacctccacagccgccagctcgccgtctatggccgcgagaccatgaag 7431 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 7430 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 7373 Score = 83.8 bits (42), Expect = 5e-13 Identities = 63/70 (90%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| |||| ||||| ||||||| |||||||||| Sbjct: 6667 agaaccttgtccttgcgggtgtcaagtccgtaaacttgcacgatgatgacaatgtggagc 6608 Query: 459 tatgggactt 468 |||||||||| Sbjct: 6607 tatgggactt 6598 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 7700 ctggatctgacgcggcagctctcgccggctgcct 7667
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 317020 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||| Sbjct: 316314 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatgacaatgtggagc 316255 Query: 459 tatgggactt 468 |||||||||| Sbjct: 316254 tatgggactt 316245 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 317137 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 317078 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 317077 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 317020 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||| Sbjct: 316314 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatgacaatgtggagc 316255 Query: 459 tatgggactt 468 |||||||||| Sbjct: 316254 tatgggactt 316245 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 317350 ctggatctgacgcggcagctctcgccggctgcct 317317
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 139 bits (70), Expect = 9e-30 Identities = 106/118 (89%) Strand = Plus / Minus Query: 278 gagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaag 337 |||||||| |||||||| |||||||||||||||||||| || ||||||||||| |||||| Sbjct: 50188 gagatcgatgaggaccttcacagccgccagctcgccgtctatggccgcgagaccatgaag 50129 Query: 338 cgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || ||||||||||||||||||||||| || || ||| | |||||||||||||| |||| Sbjct: 50128 cgcctcttcgcctccaacgtcctcgtctctggcctcaacggcctcggcgccgagatcg 50071 Score = 91.7 bits (46), Expect = 2e-15 Identities = 64/70 (91%) Strand = Plus / Minus Query: 399 agaaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagc 458 |||||||||||||||| ||||||||||| ||||| ||||| ||||||| |||||||||| Sbjct: 49365 agaaccttgtccttgcgggtgtcaagtccgtaaccttgcacgatgatgacaatgtggagc 49306 Query: 459 tatgggactt 468 |||||||||| Sbjct: 49305 tatgggactt 49296 Score = 44.1 bits (22), Expect = 0.41 Identities = 31/34 (91%) Strand = Plus / Minus Query: 77 ctggatctggcgcggcagctcccgccggccgcct 110 ||||||||| ||||||||||| ||||||| |||| Sbjct: 50401 ctggatctgacgcggcagctctcgccggctgcct 50368
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 127 bits (64), Expect = 4e-26 Identities = 141/167 (84%) Strand = Plus / Plus Query: 277 ggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaa 336 ||||||||||||||||||||||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 317 ggagatcgacgaggacctccacagcaggcagctcgccgtgtacgggagggagaccatgcg 376 Query: 337 gcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgc 396 || |||||||||||| |||||||||| ||||| ||| | || || ||||||||||| || Sbjct: 377 ccgcctcttcgcctccgacgtcctcgtctccgggctcaacgggcttggcgccgaaattgc 436 Query: 397 anagaaccttgtccttgctggtgtcaagtctgtaactttgcatgatg 443 | |||| |||| ||||||||| ||||||||||| ||| | ||||||| Sbjct: 437 aaagaatcttgcccttgctggagtcaagtctgtcactatacatgatg 483
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10276949 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10276890 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggact 372 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10276889 ggcggctcttcgcgtccaacgtcctcgtctccggact 10276853
>gb|AC137072.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0045E22, from chromosome 3, complete sequence Length = 160920 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 138362 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 138303 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggact 372 ||| |||||||| |||||||||||||| |||||||| Sbjct: 138302 ggcggctcttcgcgtccaacgtcctcgtctccggact 138266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Minus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 10275050 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 10274991 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggact 372 ||| |||||||| |||||||||||||| |||||||| Sbjct: 10274990 ggcggctcttcgcgtccaacgtcctcgtctccggact 10274954
>dbj|AK120544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129J22, full insert sequence Length = 3682 Score = 89.7 bits (45), Expect = 8e-15 Identities = 84/97 (86%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||||||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 368 cggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgc 427 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggact 372 ||| |||||||| |||||||||||||| |||||||| Sbjct: 428 ggcggctcttcgcgtccaacgtcctcgtctccggact 464
>ref|NM_185567.2| Oryza sativa (japonica cultivar-group), mRNA Length = 3522 Score = 71.9 bits (36), Expect = 2e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || |||||||||||| | |||||||| || || ||| | |||||||| || || || | Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcggtgcagagattg 448 Query: 396 canagaaccttgtccttgctggtgtcaagtc 426 | ||||||||| |||||||| |||||||| Sbjct: 449 ccaagaaccttgctcttgctggggtcaagtc 479
>dbj|AK074007.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076H04, full insert sequence Length = 3522 Score = 71.9 bits (36), Expect = 2e-09 Identities = 122/151 (80%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 329 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 388 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcg 395 || |||||||||||| | |||||||| || || ||| | |||||||| || || || | Sbjct: 389 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcggtgcagagattg 448 Query: 396 canagaaccttgtccttgctggtgtcaagtc 426 | ||||||||| |||||||| |||||||| Sbjct: 449 ccaagaaccttgctcttgctggggtcaagtc 479
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 29425631 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 29425690 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 384 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 29425691 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 29425739
>dbj|AP004333.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0034A04 Length = 151263 Score = 58.0 bits (29), Expect = 3e-05 Identities = 89/109 (81%) Strand = Plus / Plus Query: 276 cggagatcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatga 335 ||||||| ||||||||||| |||||| | ||||||||||| ||||| | ||||| ||| Sbjct: 88553 cggagattgacgaggacctgcacagcaggcagctcgccgtctacgggagggagaccatgc 88612 Query: 336 agcgtctcttcgcctccaacgtcctcgtatccggactccagggcctcgg 384 || |||||||||||| | |||||||| || || ||| | |||||||| Sbjct: 88613 gccgcctcttcgcctcccatgtcctcgtctctggcctcaatggcctcgg 88661
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 52.0 bits (26), Expect = 0.002 Identities = 136/173 (78%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaac 355 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 355 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaat 414 Query: 356 gtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtccttgct 415 || ||| | || || | || || || || ||||| || || |||| ||| | |||||| Sbjct: 415 gttctcatctcggggatgcacggtcttggtgccgagattgccaagaatcttatacttgct 474 Query: 416 ggtgtcaagtctgtaactttgcatgatgatggtaatgtggagctatgggactt 468 ||||| |||||||| || ||||||||||| | ||| |||||||||||||| Sbjct: 475 ggtgtgaagtctgtgaccttgcatgatgaaagagttgtagagctatgggactt 527
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 52.0 bits (26), Expect = 0.002 Identities = 136/173 (78%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaac 355 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 316 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaat 375 Query: 356 gtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtccttgct 415 || ||| | || || | || || || || ||||| || || |||| ||| | |||||| Sbjct: 376 gttctcatctcggggatgcacggtcttggtgccgagattgccaagaatcttatacttgct 435 Query: 416 ggtgtcaagtctgtaactttgcatgatgatggtaatgtggagctatgggactt 468 ||||| |||||||| || ||||||||||| | ||| |||||||||||||| Sbjct: 436 ggtgtgaagtctgtgaccttgcatgatgaaagagttgtagagctatgggactt 488
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 52.0 bits (26), Expect = 0.002 Identities = 136/173 (78%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaac 355 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 232 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaat 291 Query: 356 gtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtccttgct 415 || ||| | || || | || || || || ||||| || || |||| ||| | |||||| Sbjct: 292 gttctcatctcggggatgcacggtcttggtgccgagattgccaagaatcttatacttgct 351 Query: 416 ggtgtcaagtctgtaactttgcatgatgatggtaatgtggagctatgggactt 468 ||||| |||||||| || ||||||||||| | ||| |||||||||||||| Sbjct: 352 ggtgtgaagtctgtgaccttgcatgatgaaagagttgtagagctatgggactt 404
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 52.0 bits (26), Expect = 0.002 Identities = 136/173 (78%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaac 355 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 329 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaat 388 Query: 356 gtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtccttgct 415 || ||| | || || | || || || || ||||| || || |||| ||| | |||||| Sbjct: 389 gttctcatctcggggatgcacggtcttggtgccgagattgccaagaatcttatacttgct 448 Query: 416 ggtgtcaagtctgtaactttgcatgatgatggtaatgtggagctatgggactt 468 ||||| |||||||| || ||||||||||| | ||| |||||||||||||| Sbjct: 449 ggtgtgaagtctgtgaccttgcatgatgaaagagttgtagagctatgggactt 501
>gb|DQ180310.1| Fragaria x ananassa clone PBCESTFXA5 SSR marker Length = 911 Score = 52.0 bits (26), Expect = 0.002 Identities = 145/185 (78%) Strand = Plus / Plus Query: 281 atcgacgaggacctccacagccgccagctcgccgtatacggccgcgagacaatgaagcgt 340 ||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| |||| | | Sbjct: 720 atcgatgaggatctgcacagccggcagcttgccgtctatggccgggagactatgaggagg 779 Query: 341 ctcttcgcctccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanag 400 |||||||| ||||| || || | || || | ||||||||||| ||||| || || || Sbjct: 780 ctcttcgcatccaatgttctgatttcagggatacagggcctcggtgccgagattgccaag 839 Query: 401 aaccttgtccttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagcta 460 || || | ||||||||||| ||| |||| || ||||||||||| || || || ||||| Sbjct: 840 aatctcattcttgctggtgtgaagactgtgaccttgcatgatgaagggaaagtagagctt 899 Query: 461 tggga 465 ||||| Sbjct: 900 tggga 904
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 122 ctgcttttcgcggcggcggtcgg 144 ||||||||||||||||||||||| Sbjct: 272756 ctgcttttcgcggcggcggtcgg 272778
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 410 cttgctggtgtcaagtctgtaactttgcatgatgatggtaatgtggagctatgggactt 468 ||||||||||| |||||||| || ||||||||||| | ||| |||||||||||||| Sbjct: 48978 cttgctggtgtgaagtctgtgaccttgcatgatgaaagagttgtagagctatgggactt 49036 Score = 46.1 bits (23), Expect = 0.10 Identities = 50/59 (84%) Strand = Plus / Plus Query: 296 cacagccgccagctcgccgtatacggccgcgagacaatgaagcgtctcttcgcctccaa 354 ||||| |||||||||||||| || || || ||||| |||| ||||||||| || ||||| Sbjct: 48502 cacagtcgccagctcgccgtctatggtcgtgagactatgaggcgtctctttgcttccaa 48560
>gb|AY232997.1| Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB), and PopD (popD) genes, complete cds Length = 4231 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 2515 gcgaagtcgagaaccagcagaagaaa 2540
>gb|AE004597.1| Pseudomonas aeruginosa PAO1, section 158 of 529 of the complete genome Length = 10052 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 6919 gcgaagtcgagaaccagcagaagaaa 6944
>gb|AF035922.1|AF035922 Pseudomonas aeruginosa PepB and PepD genes, complete cds; and ExsC gene, partial cds Length = 2688 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 452 gcgaagtcgagaaccagcagaagaaa 477
>gb|AF010149.1|AF010149 Pseudomonas aeruginosa PcrG (pcrG), PcrV (pcrV), PcrH (pcrH), PopB (popB) and PopD (popD) genes, complete cds Length = 4168 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 201 gcgaggtcgagaaccagcagaagaaa 226 |||| ||||||||||||||||||||| Sbjct: 2361 gcgaagtcgagaaccagcagaagaaa 2386
>gb|DQ346667.1| Rhodococcus sp. DK17 vanillate monooxygenase oxygenase subunit (vanA) and vanillate monooxygenase reductase subunit (vanB) genes, complete cds Length = 2290 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 273 ccacggagatcgacgaggacc 293 ||||||||||||||||||||| Sbjct: 561 ccacggagatcgacgaggacc 581
>ref|NM_190755.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 873 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 88 gcggcagctcccgccggccg 107 |||||||||||||||||||| Sbjct: 141 gcggcagctcccgccggccg 160
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 gggcctcggcgccgaaatcg 395 |||||||||||||||||||| Sbjct: 3154771 gggcctcggcgccgaaatcg 3154752
>ref|XM_323722.1| Neurospora crassa OR74A hypothetical protein (NCU04370.1) partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 6.3 Identities = 61/75 (81%) Strand = Plus / Plus Query: 350 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 409 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 160 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 219 Query: 410 cttgctggtgtcaag 424 |||||||| |||||| Sbjct: 220 cttgctggcgtcaag 234
>ref|XM_951050.1| Neurospora crassa OR74A hypothetical protein (NCU04370.1) partial mRNA Length = 3117 Score = 40.1 bits (20), Expect = 6.3 Identities = 61/75 (81%) Strand = Plus / Plus Query: 350 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 409 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 160 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 219 Query: 410 cttgctggtgtcaag 424 |||||||| |||||| Sbjct: 220 cttgctggcgtcaag 234
>emb|CR706170.3|CNS0G7TY Tetraodon nigroviridis full-length cDNA Length = 447 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 cctccacagccgccagctcg 311 |||||||||||||||||||| Sbjct: 23 cctccacagccgccagctcg 42
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cctgcttttcgcggcggcggtcgg 144 ||||||| |||||||||||||||| Sbjct: 3214943 cctgcttctcgcggcggcggtcgg 3214920
>emb|AL445929.5| Human DNA sequence from clone RP11-408M7 on chromosome 13 Contains a CpG island, complete sequence Length = 169403 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 400 gaaccttgtccttgctggtg 419 |||||||||||||||||||| Sbjct: 98995 gaaccttgtccttgctggtg 99014
>emb|AJ575136.1|SMA575136 Sordaria macrospora partial smu4370 gene for ubiquitin activating enzyme E1 homologue, exons 1-2 Length = 467 Score = 40.1 bits (20), Expect = 6.3 Identities = 61/75 (81%) Strand = Plus / Plus Query: 350 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 409 |||||||||||| | ||| ||| |||| ||||||| ||| ||||| ||||| | | | Sbjct: 29 tccaacgtcctcatcgtcggcctcaagggtctcggcgtcgagatcgccaagaacgtcgcc 88 Query: 410 cttgctggtgtcaag 424 ||||||||||||||| Sbjct: 89 cttgctggtgtcaag 103
>emb|X69959.1|ACNTRA A.caulinodans NtrA gene for RNA polymerase sigma factor Length = 2674 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gcctgcttttcgcggcggcg 139 |||||||||||||||||||| Sbjct: 2429 gcctgcttttcgcggcggcg 2410
>emb|BX908809.1| Neurospora crassa DNA linkage group IV Cosmid contig 29E8 Length = 197698 Score = 40.1 bits (20), Expect = 6.3 Identities = 61/75 (81%) Strand = Plus / Plus Query: 350 tccaacgtcctcgtatccggactccagggcctcggcgccgaaatcgcanagaaccttgtc 409 |||||||||||| | ||| ||| |||||||||||| ||| ||||| ||||| | | | Sbjct: 151316 tccaacgtcctcatcgtcggcctcaagggcctcggcgtcgagatcgccaagaacgtggcc 151375 Query: 410 cttgctggtgtcaag 424 |||||||| |||||| Sbjct: 151376 cttgctggcgtcaag 151390
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 tggcagggaggcccacggagatcg 284 |||||||| ||||||||||||||| Sbjct: 3995320 tggcagggcggcccacggagatcg 3995297
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 cctgcttttcgcggcggcggtcgg 144 ||||||| |||||||||||||||| Sbjct: 4599415 cctgcttctcgcggcggcggtcgg 4599392
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gacgccgacgacgccatggc 258 |||||||||||||||||||| Sbjct: 22103919 gacgccgacgacgccatggc 22103900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccccgctgacgccgacgacg 251 |||||||||||||||||||| Sbjct: 13170622 ccccgctgacgccgacgacg 13170603
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 cggtcgggctcatcggcggc 157 |||||||||||||||||||| Sbjct: 2968702 cggtcgggctcatcggcggc 2968683
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 ctgcttttcgcggcggcggt 141 |||||||||||||||||||| Sbjct: 2131662 ctgcttttcgcggcggcggt 2131643
>dbj|AP004784.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0012F14 Length = 168629 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 ccccgctgacgccgacgacg 251 |||||||||||||||||||| Sbjct: 87810 ccccgctgacgccgacgacg 87791
>dbj|AP003871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1117_F10 Length = 169948 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 gacgccgacgacgccatggc 258 |||||||||||||||||||| Sbjct: 66882 gacgccgacgacgccatggc 66863
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 ggagaccgtcgccagcgagg 206 |||||||||||||||||||| Sbjct: 4702159 ggagaccgtcgccagcgagg 4702178 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,087,980 Number of Sequences: 3902068 Number of extensions: 3087980 Number of successful extensions: 67312 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65983 Number of HSP's gapped (non-prelim): 1323 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
