>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 885

 Score =  159 bits (401), Expect = 4e-39
 Identities = 82/113 (72%), Positives = 88/113 (77%)
 Frame = +3

Query: 102 PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEA 281
           PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSEA
Sbjct: 5   PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64

Query: 282 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAXSGKEPIHWHSRGVAARA 440
            AVGS+L                  S  ESSKQD  +GKEPIHWHS+GVAARA
Sbjct: 65  TAVGSLL-SPGVGSDSGEGGSKVGGSAVESSKQDTKNGKEPIHWHSKGVAARA 116

>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 875

 Score =  127 bits (320), Expect = 9e-30
 Identities = 68/113 (60%), Positives = 80/113 (70%), Gaps = 1/113 (0%)
 Frame = +3

Query: 105 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SEA 281
           VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+
Sbjct: 5   VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64

Query: 282 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAXSGKEPIHWHSRGVAARA 440
           A+V  +L                     +S K D  S +E +HWH+RGVAARA
Sbjct: 65  ASVAPVLYPGGGTDSGERNVKSQPGL-SDSRKADGKSQQEAVHWHTRGVAARA 116

>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 888

 Score =  117 bits (293), Expect = 1e-26
 Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
 Frame = +3

Query: 105 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSEA 281
           VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E 
Sbjct: 5   VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64

Query: 282 AAVGSILXXXXXXXXXXXXXXXXXASGGESSKQDAXSGKEPIHWHSRGVAARA 440
           +++G+++                  +  ++ K DA   ++ + WH+RGVAARA
Sbjct: 65  SSIGTMINPGAGSDSGERSLKFLVGT-TDAQKSDA-KDQQDLQWHTRGVAARA 115

>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)|
          Length = 826

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +3

Query: 108 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAA 287
           ++P  L ILP RN V  PG ++ +      ++ L++  +    D  +IGV+  R +E   
Sbjct: 27  DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83

Query: 288 VGS 296
            G+
Sbjct: 84  PGA 86

>RECX_DEIRA (Q9RUS2) Regulatory protein recX|
          Length = 204

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -2

Query: 381 PVCSTLPQ--KHQATGGLLPLNHRPLQ-----ATGSNQQPQPQSPAREAPQSD 244
           PVC   P   K  ++GG+LP+ +RP +     A+    +P+P+ P     Q +
Sbjct: 2   PVCGRRPWQVKRSSSGGILPVMYRPRRRSSTPASEGEAEPRPRRPKTREEQRE 54

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 372 STLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 247
           S +P   Q   G  P+N  P Q+   +QQP    PA+   QS
Sbjct: 714 SHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS 755

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 330 PLNHRPLQATGSNQQPQPQSPAREAPQ 250
           P   +P Q T +  QPQP +PA+  PQ
Sbjct: 432 PAKPQPQQPTPAKPQPQPPTPAKPQPQ 458

>VG1_BPIKE (P03658) Gene I protein|
          Length = 365

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 281 CGCWFDPVAWSGR*FRGRRPPVAWCFWGR 367
           CG WF+   WS    + R+P + WC   R
Sbjct: 90  CGTWFNSRNWSD---KSRQPVIDWCLHAR 115

>GDBX_WHEAT (P21292) Gamma-gliadin precursor|
          Length = 302

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 369 TLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 247
           T+PQ HQ        +H+P Q     QQ  P  P ++ PQ+
Sbjct: 51  TIPQPHQT------FHHQPQQTFPQPQQTYPHQPQQQFPQT 85

>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = -2

Query: 426 LPGCASEWAPS------RSXHPVCSTLP 361
           LP C S+WAP+       S HP+C++ P
Sbjct: 658 LPPCCSQWAPATTSLIFSSQHPLCASPP 685

>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 363 PQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQ 250
           PQ  Q  G        P    GSNQQP+ Q+P ++ PQ
Sbjct: 115 PQNQQQGGD-------PYNQGGSNQQPRQQAPRQQRPQ 145

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 384 HPVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 253
           H +   L Q+H  +  L P +H P+ A  + Q   PQ P    P
Sbjct: 48  HQIIPVLSQQHSPSHSLPPQHHIPIMA--AQQPAPPQQPVMPVP 89

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
           domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 142 RNGSMASRPGSSTGASAMAADALLWCVRRTAGGTGIRVEE 23
           RN         +TG++    + L WC  +TAG  G+ V +
Sbjct: 493 RNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSD 532


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,789,196
Number of Sequences: 219361
Number of extensions: 1071776
Number of successful extensions: 3545
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3535
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)