ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46c10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C ... 37 0.025
2I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C ... 37 0.025
3I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C ... 34 0.22
4I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C ... 34 0.22
5I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C ... 32 0.82
6I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C ... 32 1.1
7ADA30_HUMAN (Q9UKF2) ADAM 30 precursor (EC 3.4.24.-) (A disinteg... 31 1.8
8YO43_CAEEL (P34681) Hypothetical protein ZK757.3 30 4.1
9Y866_ARCFU (O29395) Hypothetical sugar kinase AF0866 29 5.3
10CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phyto... 29 6.9
11TFS2_YEAST (P07273) Transcription elongation factor S-II (DNA st... 28 9.1

>I2C4_MOUSE (Q8CJF8) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4) (Piwi/argonaute family protein
           meIF2C4)
          Length = 861

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 333 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYXCNLKYE 449
           RPG G  G PI+L+ NHF+V +   D   +HY  ++K E
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVDIKPE 54



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>I2C4_HUMAN (Q9HCK5) Eukaryotic translation initiation factor 2C 4 (eIF2C 4)|
           (eIF-2C 4) (Argonaute-4)
          Length = 861

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = +3

Query: 333 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYXCNLKYE 449
           RPG G  G PI+L+ NHF+V +   D   +HY  ++K E
Sbjct: 18  RPGLGTVGKPIRLLANHFQVQIPKID--VYHYDVDIKPE 54



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>I2C1_MOUSE (Q8CJG1) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Piwi/argonaute family protein
           meIF2C1)
          Length = 857

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 333 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYXCNLK 443
           RPG G  G PI+L+ N+F+V +   D   +HY  ++K
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVDIK 60



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>I2C1_HUMAN (Q9UL18) Eukaryotic translation initiation factor 2C 1 (eIF2C 1)|
           (eIF-2C 1) (Argonaute-1) (Putative RNA-binding protein
           Q99)
          Length = 857

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +3

Query: 333 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYXCNLK 443
           RPG G  G PI+L+ N+F+V +   D   +HY  ++K
Sbjct: 26  RPGIGTVGKPIKLLANYFEVDIPKID--VYHYEVDIK 60



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>I2C3_HUMAN (Q9H9G7) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3)
          Length = 860

 Score = 32.0 bits (71), Expect = 0.82
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +3

Query: 306 SKPRRALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFH 422
           ++P   +  RPG+G  G PI+L+ N F+V +   D + +
Sbjct: 11  AQPLLMVPRRPGYGTMGKPIKLLANCFQVEIPKIDVYLY 49



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>I2C3_MOUSE (Q8CJF9) Eukaryotic translation initiation factor 2C 3 (eIF2C 3)|
           (eIF-2C 3) (Argonaute-3) (Piwi/argonaute family protein
           meIF2C3)
          Length = 860

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 333 RPGFGKRGNPIQLVTNHFKVSLKTTDEFFH 422
           RPG+G  G PI+L+ N F+V +   D + +
Sbjct: 20  RPGYGTMGKPIKLLANCFQVEIPKIDVYLY 49



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>ADA30_HUMAN (Q9UKF2) ADAM 30 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 30)
          Length = 790

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -1

Query: 195 VAGHH--PQQHATPFGETGNSPEEPNR*TSQEIRRTKPGNQEGEGK 64
           V G+H  P+Q   P  +     EE    T QE  +TK G +E E K
Sbjct: 711 VIGNHLKPKQEKMPLSKAKTEQEESKTKTVQEESKTKTGQEESEAK 756



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>YO43_CAEEL (P34681) Hypothetical protein ZK757.3|
          Length = 1040

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = +3

Query: 318 RALIARPGFGKRGNPIQLVTNHFKVSLKTTDEFFHHYXCNLKYEDDRPVD 467
           R ++ARPG G  G  I + +N F + LK        Y   + +   R +D
Sbjct: 84  REVVARPGLGTIGRQIPVKSNFFAMDLKNPKMVVIQYHVEIHHPGCRKLD 133



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>Y866_ARCFU (O29395) Hypothetical sugar kinase AF0866|
          Length = 492

 Score = 29.3 bits (64), Expect = 5.3
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -2

Query: 194 WQVITLNNMRLHLGKQGTVRRSRTAELVKKSVERNRATKKAKGRTI*STTVLEP*IRP 21
           WQ +  N +   + +  T+R +RTA ++ + V +   T K K R     T+    IRP
Sbjct: 93  WQDMRANALAEEMNRDSTIRMARTAGMIARGVVKLLPTLKNKRRVKWLITLSRLSIRP 150



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>CRTI_SYNP7 (P26294) Phytoene dehydrogenase (EC 1.14.99.-) (Phytoene|
           desaturase)
          Length = 474

 Score = 28.9 bits (63), Expect = 6.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -3

Query: 421 WKNSSVVFNETLK*LVTSCIGFPLLPKPGRAIRALL 314
           WK+ S++FN+  K    S   FP +P P   + A+L
Sbjct: 79  WKSHSMIFNQPTKPGTYSRFDFPDIPAPINGVAAIL 114



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>TFS2_YEAST (P07273) Transcription elongation factor S-II (DNA strand transfer|
           protein alpha) (STP-alpha) (DNA strand transferase 1)
           (Pyrimidine pathway regulatory protein 2)
          Length = 309

 Score = 28.5 bits (62), Expect = 9.1
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 12/61 (19%)
 Frame = -1

Query: 192 AGHHPQQHA-------TPFGETGNSPEEPNR*TSQEIRR-----TKPGNQEGEGKDDLIY 49
           A  H Q HA       T  GE+ N  ++P    S  +++     TKP N + +G D  IY
Sbjct: 85  AQQHHQDHAPGNAEDKTTVGESVNGVQQPASSQSDAMKQDKYVSTKPRNSKNDGVDTAIY 144

Query: 48  Y 46
           +
Sbjct: 145 H 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,958,354
Number of Sequences: 219361
Number of extensions: 1214548
Number of successful extensions: 3140
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3094
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3138
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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