ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor 30 2.3
2TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (... 30 4.0
3ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600 30 4.0
4OVO_DROME (P51521) Protein ovo (Protein shaven baby) 29 6.8
5TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit T... 28 8.9

>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor|
          Length = 1093

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 16/35 (45%), Positives = 17/35 (48%)
 Frame = -1

Query: 337 WCRWSPCS*AGCGNRGTQRTGPCRRGRWACTPPRP 233
           W  WSPCS A CG    QRT        +CT P P
Sbjct: 858 WTSWSPCS-ASCGGGHYQRTR-------SCTSPAP 884



to top

>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)|
           (3-dehydrosphinganine reductase) (KDS reductase)
          Length = 969

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +3

Query: 153 QHHEDGGVVRFRDSQQRLQVQAQEEV-QGLGGVQAHXXXXXXXXXXXXXXXXXXXXXXXX 329
           QHH+     + +  QQ  Q Q Q ++ QGLG  QAH                        
Sbjct: 660 QHHQQQQQQQHQQQQQHQQQQQQADMLQGLGQPQAH--------------------PHQH 699

Query: 330 XHQPPVAP 353
            HQPPVAP
Sbjct: 700 QHQPPVAP 707



to top

>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600|
          Length = 722

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
 Frame = +1

Query: 190 IHNSAFRYKHKKRSKVWEEYKPIFLDGKVQFAECLY----CHNRLSCKDSNGTSHLWRHQ 357
           IH +   YK  +  K + +   + L  ++   E LY    C    S K     SHL RH+
Sbjct: 603 IHTAEKPYKCNECGKAFNQQSQLSLHHRIHAGEKLYKCETCDKVFSRK-----SHLKRHR 657

Query: 358 KICPGK 375
           +I PGK
Sbjct: 658 RIHPGK 663



to top

>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 153 QHHEDGGVVRFRDSQQRLQVQAQEEVQGLGGVQ 251
           QHH+  GV + +  Q  +Q Q Q  VQ   GVQ
Sbjct: 840 QHHQQHGVQQQQQQQHSVQQQQQHNVQQQHGVQ 872



to top

>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,|
           mitochondrial precursor
          Length = 343

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/20 (55%), Positives = 17/20 (85%)
 Frame = +3

Query: 180 RFRDSQQRLQVQAQEEVQGL 239
           +F+D+Q+RLQ Q+QE +Q L
Sbjct: 302 QFKDNQRRLQEQSQESIQNL 321


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,842,561
Number of Sequences: 219361
Number of extensions: 940681
Number of successful extensions: 3776
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3767
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top