Clone Name | bastl46c09 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor | 30 | 2.3 | 2 | TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (... | 30 | 4.0 | 3 | ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600 | 30 | 4.0 | 4 | OVO_DROME (P51521) Protein ovo (Protein shaven baby) | 29 | 6.8 | 5 | TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit T... | 28 | 8.9 |
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>SEM5B_HUMAN (Q9P283) Semaphorin-5B precursor| Length = 1093 Score = 30.4 bits (67), Expect = 2.3 Identities = 16/35 (45%), Positives = 17/35 (48%) Frame = -1 Query: 337 WCRWSPCS*AGCGNRGTQRTGPCRRGRWACTPPRP 233 W WSPCS A CG QRT +CT P P Sbjct: 858 WTSWSPCS-ASCGGGHYQRTR-------SCTSPAP 884
>TSC10_NEUCR (Q7RZR2) 3-ketodihydrosphingosine reductase tsc-10 (EC 1.1.1.102)| (3-dehydrosphinganine reductase) (KDS reductase) Length = 969 Score = 29.6 bits (65), Expect = 4.0 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 1/68 (1%) Frame = +3 Query: 153 QHHEDGGVVRFRDSQQRLQVQAQEEV-QGLGGVQAHXXXXXXXXXXXXXXXXXXXXXXXX 329 QHH+ + + QQ Q Q Q ++ QGLG QAH Sbjct: 660 QHHQQQQQQQHQQQQQHQQQQQQADMLQGLGQPQAH--------------------PHQH 699 Query: 330 XHQPPVAP 353 HQPPVAP Sbjct: 700 QHQPPVAP 707
>ZN600_HUMAN (Q6ZNG1) Zinc finger protein 600| Length = 722 Score = 29.6 bits (65), Expect = 4.0 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Frame = +1 Query: 190 IHNSAFRYKHKKRSKVWEEYKPIFLDGKVQFAECLY----CHNRLSCKDSNGTSHLWRHQ 357 IH + YK + K + + + L ++ E LY C S K SHL RH+ Sbjct: 603 IHTAEKPYKCNECGKAFNQQSQLSLHHRIHAGEKLYKCETCDKVFSRK-----SHLKRHR 657 Query: 358 KICPGK 375 +I PGK Sbjct: 658 RIHPGK 663
>OVO_DROME (P51521) Protein ovo (Protein shaven baby)| Length = 1351 Score = 28.9 bits (63), Expect = 6.8 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 153 QHHEDGGVVRFRDSQQRLQVQAQEEVQGLGGVQ 251 QHH+ GV + + Q +Q Q Q VQ GVQ Sbjct: 840 QHHQQHGVQQQQQQQHSVQQQQQHNVQQQHGVQ 872
>TI50A_DROME (Q9V9P3) Import inner membrane translocase subunit TIM50-A,| mitochondrial precursor Length = 343 Score = 28.5 bits (62), Expect = 8.9 Identities = 11/20 (55%), Positives = 17/20 (85%) Frame = +3 Query: 180 RFRDSQQRLQVQAQEEVQGL 239 +F+D+Q+RLQ Q+QE +Q L Sbjct: 302 QFKDNQRRLQEQSQESIQNL 321 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,842,561 Number of Sequences: 219361 Number of extensions: 940681 Number of successful extensions: 3776 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3510 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3767 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 3026354448 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)