ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46c07 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_472289.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2190 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 362 gagagcaagtttcacgcgcgcgacctcaggggtgcacgcaagtatgcggtcaaggcccag 421 ||||||| ||| ||| |||||||| ||||||| || |||||||| ||| ||||||| ||| Sbjct: 34 gagagcaggttccactcgcgcgacatcaggggcgcgcgcaagtacgcgatcaaggcgcag 93 Query: 422 aatctctgcccatcacttgagggcatatcccagatggcgtccactcttgaagttcacctt 481 || |||||||| || || ||||| ||||||||||||| ||| || || || ||||| || Sbjct: 94 aacctctgcccgtccctcgaggggatatcccagatggtgtcgacgctcgaggttcatctc 153 Query: 482 gcagcggagtc 492 || |||||||| Sbjct: 154 gccgcggagtc 164
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 362 gagagcaagtttcacgcgcgcgacctcaggggtgcacgcaagtatgcggtcaaggcccag 421 ||||||| ||| ||| |||||||| ||||||| || |||||||| ||| ||||||| ||| Sbjct: 19141071 gagagcaggttccactcgcgcgacatcaggggcgcgcgcaagtacgcgatcaaggcgcag 19141130 Query: 422 aatctctgcccatcacttgagggcatatcccagatggcgtccactcttgaagttcacctt 481 || |||||||| || || ||||| ||||||||||||| ||| || || || ||||| || Sbjct: 19141131 aacctctgcccgtccctcgaggggatatcccagatggtgtcgacgctcgaggttcatctc 19141190 Query: 482 gcagcggagtc 492 || |||||||| Sbjct: 19141191 gccgcggagtc 19141201 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 10 tttggggctttgactaaaagtcttgagctaaaaa 43 |||||||||||||||||||||||||||||||||| Sbjct: 19140088 tttggggctttgactaaaagtcttgagctaaaaa 19140121
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 85.7 bits (43), Expect = 1e-13 Identities = 109/131 (83%) Strand = Plus / Plus Query: 362 gagagcaagtttcacgcgcgcgacctcaggggtgcacgcaagtatgcggtcaaggcccag 421 ||||||| ||| ||| |||||||| ||||||| || |||||||| ||| ||||||| ||| Sbjct: 74591 gagagcaggttccactcgcgcgacatcaggggcgcgcgcaagtacgcgatcaaggcgcag 74650 Query: 422 aatctctgcccatcacttgagggcatatcccagatggcgtccactcttgaagttcacctt 481 || |||||||| || || ||||| ||||||||||||| ||| || || || ||||| || Sbjct: 74651 aacctctgcccgtccctcgaggggatatcccagatggtgtcgacgctcgaggttcatctc 74710 Query: 482 gcagcggagtc 492 || |||||||| Sbjct: 74711 gccgcggagtc 74721 Score = 67.9 bits (34), Expect = 3e-08 Identities = 34/34 (100%) Strand = Plus / Plus Query: 10 tttggggctttgactaaaagtcttgagctaaaaa 43 |||||||||||||||||||||||||||||||||| Sbjct: 73608 tttggggctttgactaaaagtcttgagctaaaaa 73641
>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence Length = 262048 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 252 ctgggcttcttcattcttgccca 274 ||||||||||||||||||||||| Sbjct: 108871 ctgggcttcttcattcttgccca 108849
>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence Length = 233476 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 252 ctgggcttcttcattcttgccca 274 ||||||||||||||||||||||| Sbjct: 195364 ctgggcttcttcattcttgccca 195342
>gb|AC094021.2| Homo sapiens chromosome 3 clone RP11-801L18, complete sequence Length = 214160 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Minus Query: 301 aaaggtggagatgagtgtggag 322 |||||||||||||||||||||| Sbjct: 102622 aaaggtggagatgagtgtggag 102601
>gb|AC092045.2| Homo sapiens chromosome 3 clone RP11-168J18, complete sequence Length = 171343 Score = 44.1 bits (22), Expect = 0.43 Identities = 22/22 (100%) Strand = Plus / Plus Query: 301 aaaggtggagatgagtgtggag 322 |||||||||||||||||||||| Sbjct: 74388 aaaggtggagatgagtgtggag 74409
>emb|CR956406.10| Pig DNA sequence from clone CH242-143L3 on chromosome 17, complete sequence Length = 177073 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 59 agctcctccgtccctccctcc 79 ||||||||||||||||||||| Sbjct: 65685 agctcctccgtccctccctcc 65705
>gb|AC129078.6| Mus musculus BAC clone RP24-71C5 from chromosome 18, complete sequence Length = 215826 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcaagtatgcggtcaaggcc 418 ||||||||||||||||||||| Sbjct: 164168 cgcaagtatgcggtcaaggcc 164188
>gb|AC103974.6| Homo sapiens chromosome 11, clone RP11-1081L13, complete sequence Length = 189230 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 248 ggtcctgggcttcttcattct 268 ||||||||||||||||||||| Sbjct: 91580 ggtcctgggcttcttcattct 91560
>gb|AC160123.2| Mus musculus BAC clone RP23-354J5 from chromosome 9, complete sequence Length = 199457 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 ctcctccgtccctccctcccc 81 ||||||||||||||||||||| Sbjct: 175826 ctcctccgtccctccctcccc 175806
>gb|AC135290.5| Mus musculus BAC clone RP23-58D13 from 18, complete sequence Length = 233915 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 398 cgcaagtatgcggtcaaggcc 418 ||||||||||||||||||||| Sbjct: 135253 cgcaagtatgcggtcaaggcc 135273
>gb|AC149604.1| Mus musculus BAC clone RP23-472I3 from chromosome 15, complete sequence Length = 177501 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 72 ctccctccccgaaataaaat 91 |||||||||||||||||||| Sbjct: 137380 ctccctccccgaaataaaat 137361
>gb|AC163769.4| Pan troglodytes BAC clone CH251-59O12 from chromosome unknown, complete sequence Length = 185010 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 tccctccctccccgaaataaaatc 92 ||||||||||||| |||||||||| Sbjct: 89520 tccctccctccccaaaataaaatc 89543
>gb|AC091295.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-360N5, complete sequence Length = 111108 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctccgtccctccctccc 80 |||||||||||||||||||| Sbjct: 47222 ctcctccgtccctccctccc 47203
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgaaagcacgaaatactgca 361 |||||||||||||||||||| Sbjct: 838372 tgaaagcacgaaatactgca 838391
>emb|CR380838.2| Pan troglodytes chromosome X BAC RP43-021E02, complete sequence Length = 205764 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcttgcccaagtccagctgt 285 |||||||||||||||||||| Sbjct: 155470 tcttgcccaagtccagctgt 155489
>gb|AC132594.3| Mus musculus BAC clone RP24-222P6 from chromosome 7, complete sequence Length = 162814 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cctgcgcctcctccagccgatccg 172 |||||||||||||||||| ||||| Sbjct: 137062 cctgcgcctcctccagcccatccg 137039
>gb|AC123944.4| Mus musculus BAC clone RP24-87F18 from chromosome 10, complete sequence Length = 194243 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tcctccgtccctccctcccc 81 |||||||||||||||||||| Sbjct: 150365 tcctccgtccctccctcccc 150346
>gb|AC125400.4| Mus musculus BAC clone RP24-380E10 from chromosome 10, complete sequence Length = 154681 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctccgtccctccctccc 80 |||||||||||||||||||| Sbjct: 84404 ctcctccgtccctccctccc 84385
>gb|AC126680.4| Mus musculus BAC clone RP24-347B21 from chromosome 7, complete sequence Length = 161973 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 149 cctgcgcctcctccagccgatccg 172 |||||||||||||||||| ||||| Sbjct: 73056 cctgcgcctcctccagcccatccg 73033
>gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 180216 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 taaaagtcttgagctaaaaa 43 |||||||||||||||||||| Sbjct: 91066 taaaagtcttgagctaaaaa 91085
>gb|AC121846.3| Mus musculus BAC clone RP24-83D6 from chromosome 15, complete sequence Length = 182309 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 72 ctccctccccgaaataaaat 91 |||||||||||||||||||| Sbjct: 129046 ctccctccccgaaataaaat 129065
>gb|AC121602.2| Mus musculus BAC clone RP23-309B19 from 10, complete sequence Length = 182661 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttcaaaggtggagatgagtgtgga 321 ||||||| |||||||||||||||| Sbjct: 172432 ttcaaagctggagatgagtgtgga 172409
>gb|AC005589.1| Homo sapiens BAC clone RP11-161H12 from 7, complete sequence Length = 132077 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tcctccgtccctccctcccc 81 |||||||||||||||||||| Sbjct: 59500 tcctccgtccctccctcccc 59481
>gb|AC145773.1| Pan troglodytes BAC clone RP43-32M11 from 7, complete sequence Length = 190630 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tcctccgtccctccctcccc 81 |||||||||||||||||||| Sbjct: 117539 tcctccgtccctccctcccc 117520
>emb|Z99569.1|HS106H14 Human DNA sequence from clone RP1-106H14 on chromosome Xq21.1-21.33 Contains a CpG island, complete sequence Length = 80730 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 tcttgcccaagtccagctgt 285 |||||||||||||||||||| Sbjct: 75931 tcttgcccaagtccagctgt 75950
>gb|AC024886.20| Homo sapiens 3 BAC RP11-25K24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 173270 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 cagtgaactcttgttcatttcttg 248 ||||||| |||||||||||||||| Sbjct: 112722 cagtgaaatcttgttcatttcttg 112699
>emb|Z74149.1|SCYDL101C S.cerevisiae chromosome IV reading frame ORF YDL101c Length = 1946 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtacaatatggatgaagctttgaa 345 ||||||||| |||||||||||||| Sbjct: 280 gtacaatatagatgaagctttgaa 257
>emb|X95644.1|SCCHRIVLA S.cerevisiae DNA fragment of 38.5kb from left arm of chromosome IV Length = 38516 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 gtacaatatggatgaagctttgaa 345 ||||||||| |||||||||||||| Sbjct: 18670 gtacaatatagatgaagctttgaa 18647
>emb|AL645693.8| Mouse DNA sequence from clone RP23-217N23 on chromosome 13 Contains the 3' end of a novel serine (or cysteine) proteinase inhibitor, clade B (Serpinb) or serine protease inhibitor (Spi) family member, complete sequence Length = 13777 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 62 tcctccgtccctccctcccc 81 |||||||||||||||||||| Sbjct: 11183 tcctccgtccctccctcccc 11202
>gb|AC156643.2| Mus musculus BAC clone RP23-192O3 from chromosome 12, complete sequence Length = 197420 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cttgttcatttcttggtcct 253 |||||||||||||||||||| Sbjct: 164271 cttgttcatttcttggtcct 164252
>gb|AC016575.7| Homo sapiens chromosome 5 clone CTB-40H15, complete sequence Length = 184562 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 cccaagtccagctgtctgtt 290 |||||||||||||||||||| Sbjct: 71634 cccaagtccagctgtctgtt 71653
>gb|AC044790.4|AC044790 Homo sapiens chromosome 11 clone RP11-141J21 containing NRXN2 (NRXN2) gene, partial cds; and RST and OAT4 genes, complete cds, complete sequence Length = 170114 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 tccctccctccccgaaataaaatc 92 ||||||||||||| |||||||||| Sbjct: 2847 tccctccctccccaaaataaaatc 2870
>gb|AC000134.14| Homo sapiens Chromosome 11q13 BAC Clone 137c7, complete sequence Length = 203300 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tccctccctccccgaaataaaatc 92 ||||||||||||| |||||||||| Sbjct: 66585 tccctccctccccaaaataaaatc 66562
>gb|AC158800.6| Mus musculus 10 BAC RP23-435N6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190805 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 ttcaaaggtggagatgagtgtgga 321 ||||||| |||||||||||||||| Sbjct: 105042 ttcaaagctggagatgagtgtgga 105019
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 attatgatttttggggcttt 20 |||||||||||||||||||| Sbjct: 1294143 attatgatttttggggcttt 1294124
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgaaagcacgaaatactgca 361 |||||||||||||||||||| Sbjct: 838370 tgaaagcacgaaatactgca 838389
>gb|AC096667.1| Homo sapiens BAC clone RP11-363K21 from 2, complete sequence Length = 194508 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 atggagttctcataaccctc 201 |||||||||||||||||||| Sbjct: 16862 atggagttctcataaccctc 16843
>gb|AC134237.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090O10, complete sequence Length = 162132 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 tgaaagcacgaaatactgca 361 |||||||||||||||||||| Sbjct: 133917 tgaaagcacgaaatactgca 133936
>gb|AC006529.1|AC006529 Homo sapiens clone SCb-20L24 from 7q31, complete sequence Length = 178069 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctccgtccctccctccc 80 |||||||||||||||||||| Sbjct: 79671 ctcctccgtccctccctccc 79652
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 attatgatttttggggcttt 20 |||||||||||||||||||| Sbjct: 58978 attatgatttttggggcttt 58959
>emb|BX530412.8| Zebrafish DNA sequence from clone DKEY-42F6 in linkage group 4, complete sequence Length = 218203 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ctcctccgtccctccctccc 80 |||||||||||||||||||| Sbjct: 44704 ctcctccgtccctccctccc 44685
>gb|AC123827.4| Mus musculus BAC clone RP24-100N12 from 5, complete sequence Length = 185363 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 tttggggctttgactaaaag 29 |||||||||||||||||||| Sbjct: 121662 tttggggctttgactaaaag 121643
>dbj|AP001092.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-727K3, complete sequence Length = 160739 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 69 tccctccctccccgaaataaaatc 92 ||||||||||||| |||||||||| Sbjct: 157893 tccctccctccccaaaataaaatc 157870
>dbj|AB231868.1| Nematostella vectensis genes for zinc finger proteins Nv-ZicB, Nv-ZicC, Nv-ZicD, Nv-ZicE, complete cds Length = 177971 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 aaaagtcttgagctaaaaag 44 |||||||||||||||||||| Sbjct: 171453 aaaagtcttgagctaaaaag 171472
>dbj|AP001032.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874N19, complete sequence Length = 165113 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 actgtgcagtgaactcttgt 238 |||||||||||||||||||| Sbjct: 116096 actgtgcagtgaactcttgt 116077
>gb|AC165340.3| Mus musculus BAC clone RP24-63G4 from chromosome 7, complete sequence Length = 241077 Score = 40.1 bits (20), Expect = 6.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 61 ctcctccgtccctccctccc 80 |||||||||||||||||||| Sbjct: 134474 ctcctccgtccctccctccc 134493
>gb|L25548.1|YSCDUN1A Saccharomyces cerevisiae protein kinase (Dun1) gene, complete cds Length = 2000 Score = 40.1 bits (20), Expect = 6.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 322 gtacaatatggatgaagctttgaa 345 ||||||||| |||||||||||||| Sbjct: 1638 gtacaatatagatgaagctttgaa 1661 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,563,962 Number of Sequences: 3902068 Number of extensions: 4563962 Number of successful extensions: 235769 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 235419 Number of HSP's gapped (non-prelim): 350 length of query: 496 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 474 effective length of database: 17,147,199,772 effective search space: 8127772691928 effective search space used: 8127772691928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
