ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46c05 |
|---|---|
| Clone Library Name | barley_pub |
>POLR_KYMVJ (P36304) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1874 Score = 34.3 bits (77), Expect = 0.16 Identities = 15/32 (46%), Positives = 18/32 (56%) Frame = -1 Query: 212 PPRPNAISPTSTCTGPPRCTRPVYISSIHQRF 117 PP PN +PTS+ T PP P+ SIH F Sbjct: 694 PPAPNKPTPTSSSTTPPSPNLPLQFGSIHSPF 725
>PRM2_PONPY (P35301) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 31.6 bits (70), Expect = 1.0 Identities = 18/36 (50%), Positives = 23/36 (63%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRRH 457 +T+G SH R +H RRR RI+ Q+ K RRRRH Sbjct: 46 RTQGHSHYRRRHCSRRRLHRIHRQQHRSCK-RRRRH 80
>VGP3_EBV (P03200) Envelope glycoprotein GP340/GP220 (Membrane antigen) (MA)| Length = 907 Score = 31.6 bits (70), Expect = 1.0 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -1 Query: 449 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 297 + S +P+ T+ +L + D +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFADPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 296 XXXXXXXXXXXXVHNDEDGGEGRLPS-------IFPPRPNAISPTSTCTGP-PRCTRP 147 ++G E + P + P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPWDNGTESKAPDMTSSTSPVTTPTPNATSPTPAVTTPTPNATSP 537
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 31.6 bits (70), Expect = 1.0 Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEVASQQSSEPLVDRADINRPRAAG 164 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAAGAPGARGSEPRDPGSPRG--SEEPGKKRHERLFHRQD------AL 76 Query: 165 WSCTCASGTDGIRP 206 W T ++GT G P Sbjct: 77 WISTSSAGTGGAEP 90
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 30.4 bits (67), Expect = 2.3 Identities = 26/74 (35%), Positives = 30/74 (40%) Frame = +3 Query: 12 IPSPPPRDPLGAAPQLPGRRGARGVWQEVASQQSSEPLVDRADINRPRAAGWSCTCASGT 191 +P PP P G P PG+ GA S SEP + A P AG SG Sbjct: 97 LPPAPPAPPPGPEPASPGQAGAPAA---PPSPAWSEP--EAALEQEPGPAG------SGE 145 Query: 192 DGIRPRREDGRQAA 233 G+R R GR A Sbjct: 146 PGLRQRGRRGRSRA 159
>GCSP_MYCPA (Q73ZQ6) Glycine dehydrogenase [decarboxylating] (EC 1.4.4.2)| (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 941 Score = 30.4 bits (67), Expect = 2.3 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 4/71 (5%) Frame = +3 Query: 186 GTDGIRP--RREDGRQAALAAVF--VVVHDDHRRGVCGALRGGRLDDDVVHRLPGRADFK 353 G +G+ RR G A+AA VVHD R D V+ R+PGRAD Sbjct: 353 GAEGLTAIARRVHGHAEAIAAALGTAVVHD-------------RYFDTVLARVPGRADEV 399 Query: 354 QEVGATRGINI 386 RGIN+ Sbjct: 400 IAAAKARGINL 410
>CRDL1_MOUSE (Q920C1) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 447 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/51 (37%), Positives = 24/51 (47%) Frame = +3 Query: 21 PPPRDPLGAAPQLPGRRGARGVWQEVASQQSSEPLVDRADINRPRAAGWSC 173 PPP G P+ PG R RG + SQQ+S +V + IN G C Sbjct: 208 PPPNRQAGGLPRFPGSRSHRGA--VIDSQQASGTIV-QIVINNKHKHGQVC 255
>VCAP_EBV (P03226) Major capsid protein (MCP)| Length = 1381 Score = 30.0 bits (66), Expect = 3.1 Identities = 14/56 (25%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Frame = +3 Query: 216 DGRQAALAAVFVVVHDDHRRGVCGALRGGRLDDDVVHRLPGR-ADFKQEVGATRGI 380 DGR+ + F+VV + H+ + + LD +++H +P ++ + VGA + + Sbjct: 106 DGRRPSKQRTFIVVKNCHKHHISTEMELSMLDLEILHSIPETPVEYAEYVGAVKTV 161
>PRM2_PANTR (P35300) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G SH R +H RRR RI+ Q+ + R+RR Sbjct: 46 RTHGHSHYRRRHCSRRRLRRIHRQQHRSCRRRKRR 80
>PRM2_PANPA (P35299) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G SH R +H RRR RI+ Q+ + R+RR Sbjct: 46 RTHGHSHYRRRHCSRRRLRRIHRQQHRSCRRRKRR 80
>PRM2_MACMU (P35297) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G SH R +H RRR RI+ ++ + RRRR Sbjct: 46 RTHGHSHYRRRHCSRRRLHRIHRRRHRSCRRRRRR 80
>PRM2_GORGO (P35313) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/35 (42%), Positives = 21/35 (60%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G SH R +H RRR RI+ Q+ + R+RR Sbjct: 46 RTHGHSHYRRRHCSRRRLRRIHRQQHRSCRRRKRR 80
>CSR2B_HUMAN (Q9H8E8) Cysteine-rich protein 2-binding protein (CSRP2-binding| protein) (CRP2BP) (CRP2-binding partner) Length = 782 Score = 29.6 bits (65), Expect = 4.0 Identities = 15/42 (35%), Positives = 21/42 (50%) Frame = +3 Query: 21 PPPRDPLGAAPQLPGRRGARGVWQEVASQQSSEPLVDRADIN 146 PPP + + P + GR+ RG Q +S E DR DI+ Sbjct: 386 PPPAGSVASGPVVGGRKKVRGPEQIKQEVESEEEKPDRMDID 427
>VGP3_EBVP3 (P68344) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 4.0 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -1 Query: 449 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 297 + S +P+ T+ +L + +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 296 XXXXXXXXXXXXVHNDEDGGEGRLP-------SIFPPRPNAISPTSTCTGP-PRCTRP 147 ++G E + P ++ P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>VGP3_EBVA8 (P68343) Envelope glycoprotein GP340 (Membrane antigen) (MA)| Length = 886 Score = 29.6 bits (65), Expect = 4.0 Identities = 30/118 (25%), Positives = 44/118 (37%), Gaps = 17/118 (14%) Frame = -1 Query: 449 VSSVSPKPTSAR*SLTSVFLLDVDTSSGSDLLFEV-------GSTGKTVD--DVIIQAPX 297 + S +P+ T+ +L + +T++G V STG TV DV P Sbjct: 420 IFSKAPESTTTSPTLNTTGFAAPNTTTGLPSSTHVPTNLTAPASTGPTVSTADVTSPTPA 479 Query: 296 XXXXXXXXXXXXVHNDEDGGEGRLP-------SIFPPRPNAISPTSTCTGP-PRCTRP 147 ++G E + P ++ P PNA SPT T P P T P Sbjct: 480 GTTSGASPVTPSPSPRDNGTESKAPDMTSPTSAVTTPTPNATSPTPAVTTPTPNATSP 537
>MINC_XANAC (Q8PN47) Probable septum site-determining protein minC| Length = 249 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/45 (33%), Positives = 19/45 (42%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGARGVWQEVASQQSSEPLVDRADI 143 S P PPP P A P P R A G Q A + + + D+ Sbjct: 119 SPPPPPPPPPARAEPAPPAARPAPGRMQRTAVRSGQQLYAENCDL 163
>PRM2_HYLLA (P35314) Protamine-2 (Protamine-P2) (Sperm histone P2)| Length = 102 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G SH R +H RRR RI+ Q+ RRRR Sbjct: 46 RTHGHSHYRRRHCSRRRLHRIHRQQHRSCGRRRRR 80
>HSP1_TRIVU (P42152) Sperm protamine P1| Length = 61 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 353 TRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +R RS RY+ RRRRSR ++ + RRRR Sbjct: 6 SRSRSRSRYRRRRRRRRSRYRSRRRRYRRSRRRR 39
>HSP1_CAEFU (P42131) Sperm protamine P1| Length = 60 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 353 TRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +R RS RY+ RRRRSR ++ + RRRR Sbjct: 6 SRSRSRSRYRRRRRRRRSRYRSRRRRYRRSRRRR 39
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 5.2 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEVASQQSSEPLVDRADINRPRAAG 164 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76 Query: 165 WSCTCASGTDGIRP 206 W T ++G G P Sbjct: 77 WISTSSAGAGGAEP 90
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.3 bits (64), Expect = 5.2 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 8/74 (10%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGA--------RGVWQEVASQQSSEPLVDRADINRPRAAG 164 S+P PPP P AA PG RG+ RG E ++ E L R D A Sbjct: 26 SVPPPPP-SPSAAAVGAPGARGSEPRDPGSPRGA--EEPGKKRHERLFHRQD------AL 76 Query: 165 WSCTCASGTDGIRP 206 W T ++G G P Sbjct: 77 WISTSSAGAGGAEP 90
>TEGU_EBV (P03186) Large tegument protein| Length = 3149 Score = 28.9 bits (63), Expect = 6.8 Identities = 13/23 (56%), Positives = 14/23 (60%) Frame = +3 Query: 15 PSPPPRDPLGAAPQLPGRRGARG 83 PS PPR GAAPQ P R+ G Sbjct: 397 PSTPPRASSGAAPQTPKRKKGLG 419
>CRDL1_HUMAN (Q9BU40) Chordin-like protein 1 precursor (Neuralin) (Ventroptin)| Length = 450 Score = 28.9 bits (63), Expect = 6.8 Identities = 20/57 (35%), Positives = 25/57 (43%) Frame = +3 Query: 3 HSSIPSPPPRDPLGAAPQLPGRRGARGVWQEVASQQSSEPLVDRADINRPRAAGWSC 173 H S PPP G + PG R RG + SQQ+S +V + IN G C Sbjct: 201 HRSHYDPPPSRQAGGLSRFPGARSHRGALMD--SQQASGTIV-QIVINNKHKHGQVC 254
>DTD_STRAW (Q82G71) D-tyrosyl-tRNA(Tyr) deacylase (EC 3.1.-.-)| Length = 145 Score = 28.9 bits (63), Expect = 6.8 Identities = 19/48 (39%), Positives = 24/48 (50%) Frame = +3 Query: 66 RRGARGVWQEVASQQSSEPLVDRADINRPRAAGWSCTCASGTDGIRPR 209 R+G R W A +EPLVD + R RA G T A+G G + R Sbjct: 86 RKGRRPTWNAAAPGDVAEPLVDEV-VARLRALG--ATVATGRFGAQMR 130
>PRM2_HUMAN (P04554) Protamine-2 (Protamine-P2) (Sperm histone P2) [Contains:| Basic nuclear protein HPI1; Basic nuclear protein HPI2; Basic nuclear protein HPS1; Basic nuclear protein HPS2; Sperm histone HP4 (Sperm protamine P4); Sperm histone HP2 (Sperm Length = 102 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 350 QTRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +T G+SH R +H RRR RI+ ++ + R+RR Sbjct: 46 RTHGQSHYRRRHCSRRRLHRIHRRQHRSCRRRKRR 80
>HSP1_PSECU (P42145) Sperm protamine P1| Length = 68 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/34 (44%), Positives = 20/34 (58%) Frame = +2 Query: 353 TRGRSH*RYQHPIRRRRSRINEQKLALVKPRRRR 454 +R RS RY+ RRRRSR ++ + RRRR Sbjct: 6 SRSRSRSRYRRRRRRRRSRYRGRRRRYRRSRRRR 39
>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2| Length = 1202 Score = 28.5 bits (62), Expect = 8.9 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = +3 Query: 12 IPSPPPRDPLGAAPQLPGRRGARG 83 IPSPPP P AP P R RG Sbjct: 462 IPSPPPSPPPSPAPLEPSSRVGRG 485
>EBNA2_EBV (P12978) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) Length = 487 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 224 PSIFPPRPNAISPT--STCTGPPRCTRP 147 P + PPRP +P +T T PPR TRP Sbjct: 193 PLMMPPRPTPPTPLPPATLTVPPRPTRP 220
>LIPA3_MOUSE (P60469) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1043 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGARGVWQEVASQQSSE 119 ++PS P DP GA GR G RG W + S + Sbjct: 372 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 405
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = -1 Query: 224 PSIFPPRPNAISPT--STCTGPPRCTRP 147 P + PPRP +P +T T PPR TRP Sbjct: 159 PLMMPPRPTPPTPLPPATLTVPPRPTRP 186
>LIPA3_RAT (Q91Z79) Liprin-alpha-3 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-3) (PTPRF-interacting protein alpha-3) Length = 1192 Score = 28.5 bits (62), Expect = 8.9 Identities = 14/37 (37%), Positives = 18/37 (48%) Frame = +3 Query: 9 SIPSPPPRDPLGAAPQLPGRRGARGVWQEVASQQSSE 119 ++PS P DP GA GR G RG W + S + Sbjct: 522 TLPSGAPLDPYGAG---SGRAGKRGRWSGAKDESSKD 555 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,708,181 Number of Sequences: 219361 Number of extensions: 1273968 Number of successful extensions: 5487 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 4828 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5466 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
