Clone Information

BLAST Search Result

Clone Name	bastl46c02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CWC21_ASPFU (Q4WDD0) Pre-mRNA-splicing factor cwc21	52	8e-07
2	CWC21_GIBZE (Q4IB70) Pre-mRNA-splicing factor CWC21	49	5e-06
3	CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21	48	1e-05
4	CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21	45	9e-05
5	CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21	45	1e-04
6	CWC21_SCHPO (O14161) Pre-mRNA-splicing factor cwc21 (Complexed w...	39	0.005
7	CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21	39	0.007
8	CWC21_DEBHA (Q6BWB8) Pre-mRNA-splicing factor CWC21	38	0.011
9	CWC21_KLULA (Q6CVR3) Pre-mRNA-splicing factor CWC21	37	0.025
10	CWC21_CANAL (Q5AP89) Pre-mRNA-splicing factor CWC21	36	0.056
11	Y115_ADE02 (P03290) Hypothetical protein E-115	35	0.095
12	CWC21_ASHGO (Q751G9) Pre-mRNA-splicing factor CWC21	34	0.16
13	APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa...	33	0.28
14	APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa...	33	0.28
15	CWC21_YEAST (Q03375) Pre-mRNA-splicing factor CWC21 (Complexed w...	33	0.36
16	CWC21_CANGA (Q6FRM6) Pre-mRNA-splicing factor CWC21	33	0.47
17	PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presy...	30	3.1
18	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	30	4.0
19	SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7	29	5.2
20	SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related p...	29	5.2
21	SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Sp...	29	5.2
22	PHOSP_SENDO (O57285) Phosphoprotein (Protein P)	29	6.8
23	PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P)	29	6.8
24	CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2	29	6.8
25	ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amilo...	29	6.8
26	V_SENDO (P69287) Protein V	29	6.8
27	V_SENDA (Q9DUE1) Protein V	29	6.8
28	W_SENDO (P69288) Protein W	29	6.8
29	W_SENDA (P69286) Protein W	29	6.8
30	VL2_HPV37 (Q80905) Minor capsid protein L2	29	6.8
31	SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1...	29	6.8
32	FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related p...	29	6.8
33	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	25	8.1
34	YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region	28	8.9
35	NIKD_PSEPK (Q88HL1) Nickel import ATP-binding protein nikD (EC 3...	28	8.9
36	ABCA2_HUMAN (Q9BZC7) ATP-binding cassette sub-family A member 2 ...	28	8.9
37	VL2_HPV24 (P50798) Minor capsid protein L2	28	8.9
38	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	8.9
39	TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Ta...	28	8.9

>CWC21_ASPFU (Q4WDD0) Pre-mRNA-splicing factor cwc21|
          Length = 217

 Score = 52.0 bits (123), Expect = 8e-07
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTNKFFIRPRTDGAAKAPLHNYDHDPGRDKPGGL--RPPNK 275
           M + +GL T RGSGT+GYVQ N  F++PR  G   AP          D   G   R P+K
Sbjct: 1   MSSNVGLSTPRGSGTSGYVQRNYAFMKPRNAGYG-APYPPVSGANANDSSRGFKQRQPDK 59

Query: 276 EILEHD 293
           +ILEHD
Sbjct: 60  QILEHD 65

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>CWC21_GIBZE (Q4IB70) Pre-mRNA-splicing factor CWC21|
          Length = 182

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 31/64 (48%), Positives = 37/64 (57%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTNKFFIRPRTDGAAKAPLHNYDHDPGRDKPGGLRPPNKEI 281
           M + +GL T RGSGT+GYVQ N   I+PR  GA     +  D D  R K    R P+K I
Sbjct: 1   MSDNVGLNTPRGSGTSGYVQRNLAHIKPRDYGAP----YPKDLDSLRHKQ---RQPDKGI 53

Query: 282 LEHD 293
           LEHD
Sbjct: 54  LEHD 57

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>CWC21_NEUCR (Q7RYH7) Pre-mRNA-splicing factor cwc-21|
          Length = 344

 Score = 48.1 bits (113), Expect = 1e-05
 Identities = 28/64 (43%), Positives = 37/64 (57%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTNKFFIRPRTDGAAKAPLHNYDHDPGRDKPGGLRPPNKEI 281
           M + +GL T RGSGT+GYVQ N    RPR +  +  P    D D  + +P   R P+K +
Sbjct: 1   MSDNVGLSTPRGSGTSGYVQRNLAHFRPRDNYQSYPP---KDFDSLKHQP---RQPDKGL 54

Query: 282 LEHD 293
           LEHD
Sbjct: 55  LEHD 58

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>CWC21_CRYNE (Q5KDV1) Pre-mRNA-splicing factor CWC21|
          Length = 205

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 28/67 (41%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTNKFFIRPRTDGAAKAPLHNYDHD---PGRDKPGGLRPPN 272
           MY  +GL TARGSGTNGYV  N   +R R +G      +   +D       KP   R P+
Sbjct: 1   MYGNVGLATARGSGTNGYVTRNTAHLRIR-EGPPGGQPYGSGYDALLESVSKPPIHRAPD 59

Query: 273 KEILEHD 293
           + ILEH+
Sbjct: 60  QGILEHE 66

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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTN 167
           MYNGIGL+TARG+GTNGYVQ N
Sbjct: 1   MYNGIGLKTARGTGTNGYVQRN 22

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>CWC21_SCHPO (O14161) Pre-mRNA-splicing factor cwc21 (Complexed with cdc5|
           protein 21) (Cell cycle control protein cwf21)
          Length = 293

 Score = 39.3 bits (90), Expect = 0.005
 Identities = 17/21 (80%), Positives = 17/21 (80%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQTN 167
           YNGIGL T RGSGTNGYV  N
Sbjct: 3   YNGIGLPTPRGSGTNGYVMRN 23

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>CWC21_YARLI (Q6C0M9) Pre-mRNA-splicing factor CWC21|
          Length = 284

 Score = 38.9 bits (89), Expect = 0.007
 Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 13/76 (17%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQTN-------------KFFIRPRTDGAAKAPLHNYDHDPGRD 245
           YNGIGL T RGS T+G++QTN             +F     TD   K      D D   D
Sbjct: 3   YNGIGLSTPRGSATSGHIQTNISNRAFQSTNHRGEFAHHEMTDEQDKRLNKKLDRDYAAD 62

Query: 246 KPGGLRPPNKEILEHD 293
                R  + E+LEH+
Sbjct: 63  -----RQADVELLEHE 73

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>CWC21_DEBHA (Q6BWB8) Pre-mRNA-splicing factor CWC21|
          Length = 179

 Score = 38.1 bits (87), Expect = 0.011
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +3

Query: 108 NGIGLQTARGSGTNGYVQTN 167
           NGIGLQTARGSGT G++Q N
Sbjct: 4   NGIGLQTARGSGTTGHIQKN 23

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>CWC21_KLULA (Q6CVR3) Pre-mRNA-splicing factor CWC21|
          Length = 113

 Score = 37.0 bits (84), Expect = 0.025
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQTNKFFIRPRTD 194
           YNGIGL +A+GS T+GYVQ +  F   + D
Sbjct: 3   YNGIGLSSAKGSSTSGYVQQSLAFTNRKKD 32

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>CWC21_CANAL (Q5AP89) Pre-mRNA-splicing factor CWC21|
          Length = 162

 Score = 35.8 bits (81), Expect = 0.056
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQTN 167
           YNGIGLQ+ RGS T+G++Q N
Sbjct: 3   YNGIGLQSVRGSATSGHIQKN 23

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>Y115_ADE02 (P03290) Hypothetical protein E-115|
          Length = 115

 Score = 35.0 bits (79), Expect = 0.095
 Identities = 36/103 (34%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
 Frame = -2

Query: 256 PPGLSRPGSWS*LWSGALAA--PSVRGRMKN------LLVCTYP-FVPDPRAVCSP---- 116
           P G S PGSW+   S   AA  P+ R R  +      L VCT P   P PRA C+P    
Sbjct: 9   PNGQSSPGSWNARPSAGPAARMPTPRNRYFSRPSSTPLKVCTAPRAAPPPRASCAPRATP 68

Query: 115 ------MPLYMAPAPASGRRDGGSAEP-*VWSGFGWDARSPIR 8
                  P   A  P    + G ++ P    S   W ARSP R
Sbjct: 69  RRGWTMTPWSNATWPTRRAKTGSASAPAGPASSAPWPARSPER 111

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>CWC21_ASHGO (Q751G9) Pre-mRNA-splicing factor CWC21|
          Length = 125

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQ 161
           YNGIGL+TA+GS T+G++Q
Sbjct: 3   YNGIGLKTAKGSSTSGHIQ 21

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>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor|
           (45/47 kDa antigen) (Fibronectin attachment protein)
           (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa
           glycoprotein) (FAP-B)
          Length = 325

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 259 NPPGLSRPGSWS*LWSGALAAPSVRGRMKNLLVCTYPFVPDPRAVCSPMPLYMAPAPA 86
           N P    P  W  +W G    P  +G  K L     P V  P A  +P P   APAPA
Sbjct: 249 NAPDAGPPQRWFVVWLGTANNPVDKGAAKALAESIRPLVAPPPAP-APAPAEPAPAPA 305

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>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor|
           (Fibronectin attachment protein) (45/47 kDa antigen)
           (FAP-B)
          Length = 325

 Score = 33.5 bits (75), Expect = 0.28
 Identities = 21/58 (36%), Positives = 24/58 (41%)
 Frame = -2

Query: 259 NPPGLSRPGSWS*LWSGALAAPSVRGRMKNLLVCTYPFVPDPRAVCSPMPLYMAPAPA 86
           N P    P  W  +W G    P  +G  K L     P V  P A  +P P   APAPA
Sbjct: 249 NAPDAGPPQRWFVVWLGTANNPVDKGAAKALAESIRPLVAPPPAP-APAPAEPAPAPA 305

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>CWC21_YEAST (Q03375) Pre-mRNA-splicing factor CWC21 (Complexed with CEF1|
           protein 21)
          Length = 135

 Score = 33.1 bits (74), Expect = 0.36
 Identities = 13/19 (68%), Positives = 18/19 (94%)
 Frame = +3

Query: 105 YNGIGLQTARGSGTNGYVQ 161
           YNGIGL++A+GS T+G+VQ
Sbjct: 3   YNGIGLKSAKGSSTSGHVQ 21

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>CWC21_CANGA (Q6FRM6) Pre-mRNA-splicing factor CWC21|
          Length = 143

 Score = 32.7 bits (73), Expect = 0.47
 Identities = 21/58 (36%), Positives = 27/58 (46%)
 Frame = +3

Query: 102 MYNGIGLQTARGSGTNGYVQTNKFFIRPRTDGAAKAPLHNYDHDPGRDKPGGLRPPNK 275
           M  G+GLQ+A+GS T+GYVQ                   +  HD   DK G +R  NK
Sbjct: 1   MGRGVGLQSAKGSSTSGYVQ------------------RSLAHDNRDDKTGIVRLKNK 40

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>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein) (Brain-derived HLMN protein)
          Length = 5038

 Score = 30.0 bits (66), Expect = 3.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 19  ISRPNQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAGPAR 147
           +S     ++KP+ P T + + +SPA  P   A     + GPA+
Sbjct: 236 VSSQQAEKTKPQAPGTAKPSQQSPAQTPAQQAKPVAQQPGPAK 278

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 19  ISRPNQTRSKPRVPPTRRLADRSPAPAP 102
           +++  + R  P  PPTRR    SPAP P
Sbjct: 554 VTKSGRRRRSPSPPPTRRRRSPSPAPPP 581

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>SFRS7_MOUSE (Q8BL97) Splicing factor, arginine/serine-rich 7|
          Length = 267

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 19  ISRPNQTRSKPRVPPTRRLADRSPAPAPCTTAS 117
           ISRP  +RSK R P  +R   RSP+ +P  +AS
Sbjct: 232 ISRPRSSRSKSRSPSPKR--SRSPSGSPHRSAS 262

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>SY121_ARATH (Q9ZSD4) Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1)|
          Length = 346

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 57  SADPPSRRPLAGAGAMYNGIGLQTARGSGTNGYVQTNKFF 176
           S +P  RR +AG G      G+Q A  +G+ G V  +KFF
Sbjct: 14  SGEPSPRRDVAGGGD-----GVQMANPAGSTGGVNLDKFF 48

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>SFRS7_HUMAN (Q16629) Splicing factor, arginine/serine-rich 7 (Splicing factor|
           9G8)
          Length = 238

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +1

Query: 19  ISRPNQTRSKPRVPPTRRLADRSPAPAPCTTAS 117
           ISRP  +RSK R P  +R   RSP+ +P  +AS
Sbjct: 203 ISRPRSSRSKSRSPSPKR--SRSPSGSPRRSAS 233

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>PHOSP_SENDO (O57285) Phosphoprotein (Protein P)|
          Length = 568

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>PHOSP_SENDA (Q9DUE2) Phosphoprotein (Protein P)|
          Length = 568

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>CMTA2_HUMAN (O94983) Calmodulin-binding transcription activator 2|
          Length = 1202

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
 Frame = -2

Query: 205 LAAPSVRGRMKNLLVCTYPFVPDPRAVCSPMP-----LYMAPAPASGRRDGGSAEP 53
           + +P V  R   L    +P  P+P  + +P+P      + +P+ +S     G AEP
Sbjct: 249 IISPKVEPRALTLTSIPHPHPPEPPPLIAPLPPELPKAHTSPSSSSSSSSSGFAEP 304

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>ACCN4_HUMAN (Q96FT7) Amiloride-sensitive cation channel 4 (Amiloride-sensitive|
           cation channel 4, pituitary) (Acid-sensing ion channel
           4)
          Length = 647

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
 Frame = -2

Query: 265 GRNPPGLSRPGSWS*LWSGALAAPSVRGRMKNLLVCTYPFV-----PDPRAVCSPMPLYM 101
           GR P  L+R G        ALA+PS RG+M   +VC   F      P  +       L  
Sbjct: 103 GRAPGLLAREGQGR----EALASPSSRGQMPIEIVCKIKFAEEDAKPKEKEAGDEQSLLG 158

Query: 100 APAPASGRRD 71
           A AP +  RD
Sbjct: 159 AVAPGAAPRD 168

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>V_SENDO (P69287) Protein V|
          Length = 369

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>V_SENDA (Q9DUE1) Protein V|
          Length = 369

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>W_SENDO (P69288) Protein W|
          Length = 318

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>W_SENDA (P69286) Protein W|
          Length = 318

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +1

Query: 31  NQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAG 138
           N TRS PR PPT +    +P   P       RP  G
Sbjct: 256 NSTRSPPRKPPTTQDEHTNPRNTPAVRIKDRRPPTG 291

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>VL2_HPV37 (Q80905) Minor capsid protein L2|
          Length = 534

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 90  GAGAMYNGIGLQTARGS-GTNGYV 158
           GAG  + G+G+ T RG+ G  GYV
Sbjct: 47  GAGVFFGGLGISTGRGTGGATGYV 70

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>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1|
           (Plenty-of-prolines 101)
          Length = 946

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +1

Query: 19  ISRPNQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAGP 141
           +++ ++ R  P  PP RR    SPAP P       R R  P
Sbjct: 552 VTKSSRRRRSPSPPPARRRRSPSPAPPPPPPPPPPRRRRSP 592

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>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)|
           (Forkhead-related transcription factor 9) (FREAC-9)
          Length = 497

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 28  PNQTRSKPRVPPTRRL---ADRSPAPAPCTTASGCRPRAGPA 144
           P +  + P  PPT  +   A  +PAPAP   ASG  P  GPA
Sbjct: 314 PGRAAAPPPGPPTASVFAGAGSAPAPAP---ASGSGPGPGPA 352

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 24.6 bits (52), Expect(2) = 8.1
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 25  RPNQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPRAGPARMG 153
           RP     +   PP    A  +PAPAP    SG  P+ G AR G
Sbjct: 136 RPAPAAPEFTAPPAAPAAPSTPAPAP----SG--PKPGGARPG 172



 Score = 22.3 bits (46), Expect(2) = 8.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 234 PGRDKPGGLRP 266
           PG  KPGG RP
Sbjct: 171 PGAPKPGGARP 181

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>YAMP_RHOCA (P14172) Hypothetical 28.2 kDa protein in ampR 5'region|
          Length = 260

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = +1

Query: 49  PRVPPTRRLADRSPAPAPCTTASGCRPRAG----PARMG 153
           PR P  +RL+ RSP P+P +  S     A     PAR+G
Sbjct: 211 PRPPSPKRLSRRSPKPSPGSRNSSAPASASRSWRPARVG 249

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>NIKD_PSEPK (Q88HL1) Nickel import ATP-binding protein nikD (EC 3.6.3.24)|
          Length = 256

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = -2

Query: 256 PPGLSRPGSWS*LWSGALAAPSVRGRMKNLLVCTYPFVPDPRAVCSPM 113
           PPGL+R      L    LAA SVRGR+ +L+      + +PR+  +P+
Sbjct: 56  PPGLARTQGQLLLDGQPLAASSVRGRLTSLV------LQNPRSAFNPV 97

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>ABCA2_HUMAN (Q9BZC7) ATP-binding cassette sub-family A member 2 (ATP-binding|
           cassette transporter 2) (ATP-binding cassette 2)
          Length = 2436

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 10  ELGISRPNQTRSKPRVPPTRRL 75
           +LG+  PN + S P+ PP RRL
Sbjct: 299 QLGLDAPNGSDSSPQAPPPRRL 320

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>VL2_HPV24 (P50798) Minor capsid protein L2|
          Length = 523

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 93  AGAMYNGIGLQTARGS-GTNGYV 158
           AG  + G+G+ T RG+ GT GYV
Sbjct: 48  AGVFFGGLGISTGRGTGGTTGYV 70

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/35 (40%), Positives = 15/35 (42%)
 Frame = +1

Query: 28  PNQTRSKPRVPPTRRLADRSPAPAPCTTASGCRPR 132
           P + R  P  PP RR    SP P P    S   PR
Sbjct: 537 PRRRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPR 571

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>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
           (Trio-associated repeat on actin)
          Length = 2014

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
 Frame = -2

Query: 154 YPFVPDPRAVCSPM----PLYMAPAPASGRRDGGSA 59
           +PF PDPR+  S      P YM PA   G RD   A
Sbjct: 706 FPFFPDPRSSESESPHHEPPYMPPAVCIGHRDAPRA 741


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,212,314
Number of Sequences: 219361
Number of extensions: 797383
Number of successful extensions: 3311
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 2952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3295
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

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