ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl... 32 0.36
2CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox prote... 32 0.47
3CUTL2_MOUSE (P70298) Homeobox protein cut-like 2 (Homeobox prote... 32 0.61
4RT65_MYXXA (P23071) RNA-directed DNA polymerase from retron Mx65... 31 0.80
5PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regu... 29 3.0
6INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finge... 29 4.0
7TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K ... 29 4.0
8TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase ... 28 6.8
9PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu... 28 8.9
10ENL_HUMAN (Q03111) Protein ENL 28 8.9
11XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyl... 28 8.9
125HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor)... 28 8.9

>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (Peptide O-xylosyltransferase 1)
          Length = 945

 Score = 32.3 bits (72), Expect = 0.36
 Identities = 18/39 (46%), Positives = 18/39 (46%)
 Frame = -2

Query: 125 RREDATAGGGVHPTPAPRDERASSVGEGGGARPVDGEVG 9
           RR  A  GGG  P PAPR ER     E   AR   G  G
Sbjct: 45  RRGGAAVGGGEQPPPAPRRERRDLPAEPAAARGGGGGGG 83



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>CUTL2_HUMAN (O14529) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1424

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +1

Query: 4   AEPTSPSTGRAPPPSPTELARSSR 75
           A PT P +  +PPPSPTE  +SS+
Sbjct: 914 ASPTEPRSSPSPPPSPTEPEKSSQ 937



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>CUTL2_MOUSE (P70298) Homeobox protein cut-like 2 (Homeobox protein Cux-2)|
           (Cut-like 2)
          Length = 1426

 Score = 31.6 bits (70), Expect = 0.61
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +1

Query: 4   AEPTSPSTGRAPPPSPTELARSSR 75
           A PT P++  +PPPSPTE  ++S+
Sbjct: 921 ASPTEPTSSPSPPPSPTEPEKTSQ 944



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>RT65_MYXXA (P23071) RNA-directed DNA polymerase from retron Mx65 (EC 2.7.7.49)|
           (Reverse transcriptase) (Mx65-RT)
          Length = 427

 Score = 31.2 bits (69), Expect = 0.80
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 12  HLAVDRPGAPPLPYGTRPLVSRRRRWMDAASCCRVFS 122
           HL   R  A  LP G R     R++WM+AA   R+FS
Sbjct: 54  HLRQVRRDARLLPKGVRRYTPGRKKWMEAAEARRLFS 90



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>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 940

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 104 GGGVHPTPAPRDERASSVGEGGGARPVDGEVG 9
           GGG+     P +  A S+G GGG RP +G  G
Sbjct: 774 GGGMGSGHRPHEGPAGSMGGGGGHRPHEGPGG 805



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>INSM1_MOUSE (Q63ZV0) Insulinoma-associated protein 1 (Zinc finger protein IA-1)|
          Length = 521

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 4   AEPTSPSTGRAPPPSPTELARSSRGA 81
           AEP  PS G  PPP P  LA  +  A
Sbjct: 41  AEPPVPSPGPLPPPPPPALAERAHAA 66



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>TGM1_RAT (P23606) Protein-glutamine gamma-glutamyltransferase K (EC|
          2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
          (Transglutaminase-1) (Epidermal TGase)
          Length = 824

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 7  EPTSPSTGRAPPPSPTELARSSRGAG 84
          +PT+PS    P P P   +RS RG G
Sbjct: 17 QPTTPSPEPEPEPEPDRSSRSRRGGG 42



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>TGM1_MOUSE (Q9JLF6) Protein-glutamine gamma-glutamyltransferase K (EC|
          2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
          (Transglutaminase-1) (Epidermal TGase)
          Length = 815

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 10 PTSPSTGRAPPPSPTELARSSRGAG 84
          PT+PS    P P P   +RS RG G
Sbjct: 19 PTTPSPEPEPEPEPDRRSRSRRGGG 43



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>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 104 GGGVHPTPAPRDERASSVGEGGGARPVDGEVG 9
           GGG+     P +    S+G GGG RP +G  G
Sbjct: 774 GGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGG 805



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>ENL_HUMAN (Q03111) Protein ENL|
          Length = 559

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +1

Query: 7   EPTSPSTGRAPPPSPTELARSSRGA 81
           E TSP+ G  PPP P   A S R A
Sbjct: 264 ESTSPNPGPPPPPPPPPRASSKRPA 288



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>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)|
           (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1)
          Length = 959

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 18/41 (43%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = -2

Query: 125 RREDATAGGGVH--PTPAPRDERASSVGEGGGARPVDGEVG 9
           RR  A  GGG    P PAPR ER     E   AR   G  G
Sbjct: 45  RRGGAAVGGGEQPPPAPAPRRERRDLPAEPAAARGGGGGGG 85



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>5HTR_BOMMO (Q17239) 5-hydroxytryptamine receptor (5-HT receptor) (Serotonin|
           receptor)
          Length = 446

 Score = 27.7 bits (60), Expect = 8.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -2

Query: 125 RREDATAGGGVHPTPAPRDERASSVGEGGG 36
           RR  ATA GGV P P P      + G  GG
Sbjct: 255 RRRGATARGGVGPPPVPAGGALVAGGGSGG 284


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.132    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,300,928
Number of Sequences: 219361
Number of extensions: 307559
Number of successful extensions: 2098
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2092
length of database: 80,573,946
effective HSP length: 32
effective length of database: 73,554,394
effective search space used: 1765305456
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
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