Clone Name | bastl46b05 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... | 39 | 0.005 | 2 | SPP2_ASPFU (Q4WP02) Pre-mRNA-splicing factor spp2 | 28 | 6.6 | 3 | ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1)... | 28 | 6.6 |
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>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/18 (94%), Positives = 18/18 (100%) Frame = +3 Query: 141 MLTATKPLVGGACAAPST 194 MLTATKPLVGGACAAPS+ Sbjct: 1 MLTATKPLVGGACAAPSS 18
>SPP2_ASPFU (Q4WP02) Pre-mRNA-splicing factor spp2| Length = 541 Score = 28.1 bits (61), Expect = 6.6 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%) Frame = +2 Query: 65 GRNQPRRCNLPPHRVAQ*PT------PYRTHDADGDQ 157 GR++ N+PP R A+ P+ P+R HD + D+ Sbjct: 28 GRSRKSAFNIPPARAAEPPSRTLARRPHRLHDDESDE 64
>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA| ligase 2) (Acyl-activating enzyme 2) Length = 644 Score = 28.1 bits (61), Expect = 6.6 Identities = 12/35 (34%), Positives = 18/35 (51%) Frame = -2 Query: 108 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 4 T W + RL W +P +VQ C +GK +G+ Sbjct: 37 TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,962,630 Number of Sequences: 219361 Number of extensions: 573851 Number of successful extensions: 1358 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1351 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1358 length of database: 80,573,946 effective HSP length: 40 effective length of database: 71,799,506 effective search space used: 1723188144 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)