ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 39 0.005
2SPP2_ASPFU (Q4WP02) Pre-mRNA-splicing factor spp2 28 6.6
3ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1)... 28 6.6

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
           (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 17/18 (94%), Positives = 18/18 (100%)
 Frame = +3

Query: 141 MLTATKPLVGGACAAPST 194
           MLTATKPLVGGACAAPS+
Sbjct: 1   MLTATKPLVGGACAAPSS 18



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>SPP2_ASPFU (Q4WP02) Pre-mRNA-splicing factor spp2|
          Length = 541

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
 Frame = +2

Query: 65  GRNQPRRCNLPPHRVAQ*PT------PYRTHDADGDQ 157
           GR++    N+PP R A+ P+      P+R HD + D+
Sbjct: 28  GRSRKSAFNIPPARAAEPPSRTLARRPHRLHDDESDE 64



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>ACSA2_PSEPK (Q88DW6) Acetyl-coenzyme A synthetase 2 (EC 6.2.1.1) (Acetate--CoA|
           ligase 2) (Acyl-activating enzyme 2)
          Length = 644

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -2

Query: 108 TRWGGRLHRLGWFRPS*TVQPCPGRSGKEEVMEGS 4
           T W  +  RL W +P  +VQ C   +GK    +G+
Sbjct: 37  TFWAEQAKRLDWIKPWSSVQQCDLHTGKARWFDGA 71


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,962,630
Number of Sequences: 219361
Number of extensions: 573851
Number of successful extensions: 1358
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1358
length of database: 80,573,946
effective HSP length: 40
effective length of database: 71,799,506
effective search space used: 1723188144
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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