Clone Name | bastl46b05 |
---|---|
Clone Library Name | barley_pub |
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA, complete cds Length = 3054 Score = 303 bits (153), Expect = 1e-79 Identities = 159/161 (98%) Strand = Plus / Plus Query: 36 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 95 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tgccagggcagggttgcacagtctagctaggtcgaaaccaaccaagacggtgcaaccttc 60 Query: 96 cgccccatcgcgtagcgcaatagccaacaccgtatcgtacccacgatgctgacggcgacc 155 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 61 cgccccatcgcgtagcgcaatagccaacaccgtagcgtacccacgatgctgacggcgacc 120 Query: 156 aagccgctagtcgggggcgcgtgtgccgcgccgtcgacgtc 196 |||||||||||||||||||||||||||||||||||| |||| Sbjct: 121 aagccgctagtcgggggcgcgtgtgccgcgccgtcgtcgtc 161
>ref|NM_102798.1| Arabidopsis thaliana EMB2279 AT1G30610 (EMB2279) mRNA, complete cds Length = 3021 Score = 44.1 bits (22), Expect = 0.16 Identities = 28/30 (93%) Strand = Plus / Minus Query: 9 cttccatcacctcttcctttcctgatctgc 38 ||||||||||||| |||||||||| ||||| Sbjct: 2689 cttccatcacctcctcctttcctgctctgc 2660
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 996213 ggggcgcgtgtgccgcgccg 996232
>gb|AC146383.4| Pan troglodytes BAC clone RP43-125D18 from 7, complete sequence Length = 141329 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 21 cttcctttcctgatctgccagggc 44 |||||||||||||| ||||||||| Sbjct: 31172 cttcctttcctgatgtgccagggc 31149
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 2313682 ggggcgcgtgtgccgcgccg 2313701
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 169 ggggcgcgtgtgccgcgccg 188 |||||||||||||||||||| Sbjct: 1861233 ggggcgcgtgtgccgcgccg 1861252
>gb|AC006960.1|AC006960 Homo sapiens clone RP11-182J23 from 7p14-15, complete sequence Length = 179757 Score = 40.1 bits (20), Expect = 2.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 21 cttcctttcctgatctgccagggc 44 |||||||||||||| ||||||||| Sbjct: 137738 cttcctttcctgatgtgccagggc 137761
>gb|U90140.1|CBU90140 Citrobacter braakii TyrR (tyrR) gene, complete cds Length = 2046 Score = 40.1 bits (20), Expect = 2.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 5 gatccttccatcacctcttc 24 |||||||||||||||||||| Sbjct: 1761 gatccttccatcacctcttc 1742
>gb|AC153386.3| Mus musculus 6 BAC RP23-198D7 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 170561 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 9 cttccatcacctcttcctttcct 31 |||||||| |||||||||||||| Sbjct: 114214 cttccatctcctcttcctttcct 114192
>gb|AC123072.4| Mus musculus BAC clone RP23-87D8 from chromosome 1, complete sequence Length = 248675 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ccatcacctcttcctttcc 30 ||||||||||||||||||| Sbjct: 7585 ccatcacctcttcctttcc 7567
>gb|AC124689.5| Mus musculus BAC clone RP24-147N6 from chromosome 6, complete sequence Length = 187752 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 9 cttccatcacctcttcctttcct 31 |||||||| |||||||||||||| Sbjct: 179100 cttccatctcctcttcctttcct 179122
>gb|AC127433.1| Mus musculus BAC clone RP23-151I7 from 1, complete sequence Length = 228489 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 12 ccatcacctcttcctttcc 30 ||||||||||||||||||| Sbjct: 134472 ccatcacctcttcctttcc 134454
>gb|AC152921.8| Medicago truncatula clone mth2-102h2, complete sequence Length = 110614 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 11 tccatcacctcttcctttc 29 ||||||||||||||||||| Sbjct: 55616 tccatcacctcttcctttc 55634
>emb|AL356275.20| Human DNA sequence from clone RP11-328D5 on chromosome 1 Contains the 5' end of a novel gene, a novel gene, the CD34 gene for CD34 antigen and the 3' end of the PLXNA2 gene for plexin A2, complete sequence Length = 198906 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 tgcacagtctagctaggtc 68 ||||||||||||||||||| Sbjct: 25906 tgcacagtctagctaggtc 25924
>emb|AL035106.28|HS998C11 Human DNA sequence from clone RP5-998C11 on chromosome 20q13.13-13.2 Contains part of the gene for P-Rex1 protein (KIAA1415, PREX1), complete sequence Length = 131007 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 tccttccatcacctcttcctttc 29 |||| |||||||||||||||||| Sbjct: 71425 tcctgccatcacctcttcctttc 71403
>ref|XM_962493.1| PREDICTED: Tribolium castaneum similar to CG18405-PA (LOC655938), mRNA Length = 2805 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 134 acccacgatgctgacggcgacca 156 |||||||||||||||| |||||| Sbjct: 1896 acccacgatgctgacgacgacca 1874
>gb|AC132058.5| Rattus norvegicus 18 BAC CH230-229M9 (Children's Hospital Oakland Research Institute) complete sequence Length = 228492 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 ttccatcacctcttccttt 28 ||||||||||||||||||| Sbjct: 34215 ttccatcacctcttccttt 34197
>gb|AC151284.3| Mus musculus BAC clone RP23-391C14 from chromosome 17, complete sequence Length = 202363 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctgatctgccagggcaggg 48 ||||||||||||||||||| Sbjct: 46534 ctgatctgccagggcaggg 46516
>gb|AC171242.2| Gallus gallus BAC clone CH261-59O7 from chromosome ul, complete sequence Length = 191648 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 tccttccatcacctcttcctttc 29 ||||||||||||| ||||||||| Sbjct: 181231 tccttccatcaccacttcctttc 181209
>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182489 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 tgcacagtctagctaggtc 68 ||||||||||||||||||| Sbjct: 138866 tgcacagtctagctaggtc 138884
>gb|AC022101.4| Homo sapiens chromosome 5 clone CTC-210G5, complete sequence Length = 173691 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttcctttcctgatctgcca 40 ||||||||||||||||||| Sbjct: 20046 ttcctttcctgatctgcca 20064
>gb|AC155301.2| Mus musculus BAC clone RP24-216J21 from chromosome 13, complete sequence Length = 192299 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tcacctcttcctttcctga 33 ||||||||||||||||||| Sbjct: 139589 tcacctcttcctttcctga 139607
>gb|AC115695.11| Mus musculus chromosome 5, clone RP24-229D18, complete sequence Length = 161430 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 10 ttccatcacctcttcctttcctg 32 ||||||||||||||||| ||||| Sbjct: 97410 ttccatcacctcttcctatcctg 97388
>gb|AC016722.9| Homo sapiens BAC clone RP11-333I13 from 2, complete sequence Length = 149995 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 24 cctttcctgatctgccagggcag 46 ||||||||| ||||||||||||| Sbjct: 88690 cctttcctgctctgccagggcag 88712
>gb|AF167304.1|AF167301S4 Homo sapiens synuclein alpha interacting protein (SNCAIP) gene, exon 5 Length = 4861 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 22 ttcctttcctgatctgcca 40 ||||||||||||||||||| Sbjct: 548 ttcctttcctgatctgcca 566
>gb|AY095345.1| Papio anubis insulin-like growth factor binding protein-1 (IGFBP-1) gene, partial cds Length = 3886 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 30 ctgatctgccagggcagggttgc 52 |||| |||||||||||||||||| Sbjct: 443 ctgacctgccagggcagggttgc 465
>gb|AC171011.2| Gallus gallus BAC clone CH261-112C5 from chromosome ul, complete sequence Length = 230767 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 7 tccttccatcacctcttcctttc 29 ||||||||||||| ||||||||| Sbjct: 134010 tccttccatcaccacttcctttc 133988
>gb|AC151264.2| Mus musculus BAC clone RP24-347M6 from 17, complete sequence Length = 153677 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 30 ctgatctgccagggcaggg 48 ||||||||||||||||||| Sbjct: 120690 ctgatctgccagggcaggg 120672
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 174 gcgtgtgccgcgccgtcga 192 ||||||||||||||||||| Sbjct: 2156084 gcgtgtgccgcgccgtcga 2156066
>emb|CT010471.11| Mouse DNA sequence from clone RP23-20A5 on chromosome 13, complete sequence Length = 219145 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 15 tcacctcttcctttcctga 33 ||||||||||||||||||| Sbjct: 106322 tcacctcttcctttcctga 106340
>emb|AL035091.2|HS88L2 Human DNA sequence from clone XX-D88L2 on chromosome 1q32.2-32.3, complete sequence Length = 160771 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 tgcacagtctagctaggtc 68 ||||||||||||||||||| Sbjct: 24021 tgcacagtctagctaggtc 24039
>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete sequence Length = 162090 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 12 ccatcacctcttcctttcc 30 ||||||||||||||||||| Sbjct: 14616 ccatcacctcttcctttcc 14634
>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete sequence Length = 206914 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 6 atccttccatcacctcttc 24 ||||||||||||||||||| Sbjct: 200540 atccttccatcacctcttc 200522
>gb|M32483.1|RATCGM1AC8 Rat carcinoembryonic antigen-related protein (CGM1) gene, exon 6, clone lambda-rnCGM1-1 Length = 1341 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ccttccatcacctcttcct 26 ||||||||||||||||||| Sbjct: 351 ccttccatcacctcttcct 333
>emb|AL670035.15| Mouse DNA sequence from clone RP23-295C20 on chromosome 4, complete sequence Length = 201142 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 7 tccttccatcacctcttcc 25 ||||||||||||||||||| Sbjct: 87962 tccttccatcacctcttcc 87944
>gb|L26080.1|TCATSEM Tribolium confusum semaphorin-I (Tsema-I) mRNA, complete cds Length = 2452 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 134 acccacgatgctgacggcgacca 156 |||||||||||||||| |||||| Sbjct: 2162 acccacgatgctgacgacgacca 2140 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,193,069 Number of Sequences: 3902068 Number of extensions: 1193069 Number of successful extensions: 84737 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84347 Number of HSP's gapped (non-prelim): 390 length of query: 196 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 174 effective length of database: 17,147,199,772 effective search space: 2983612760328 effective search space used: 2983612760328 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)