Clone Name | bastl46b04 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_197170.1| Oryza sativa (japonica cultivar-group) putative dentin phosphoryn protein (OSJNBa0017E08.7), mRNA Length = 3024 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 269 cgccgtcgcaggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 173 cgccgtcgcaggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 221 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 94 atgatcgtgcgcacctacggccgcagatcccgc 126 ||||||||||||||||||||||||||||||||| Sbjct: 1 atgatcgtgcgcacctacggccgcagatcccgc 33 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 182 tctcgtcctcgcaggacgcgttcgacttcgacgg 215 ||||||| ||||| ||||||||||| |||||||| Sbjct: 80 tctcgtcgtcgcaagacgcgttcgaattcgacgg 113
>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete sequence Length = 136120 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Minus Query: 269 cgccgtcgcaggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 115629 cgccgtcgcaggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 115581 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 94 atgatcgtgcgcacctacggccgcagatcccgc 126 ||||||||||||||||||||||||||||||||| Sbjct: 115801 atgatcgtgcgcacctacggccgcagatcccgc 115769 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Minus Query: 182 tctcgtcctcgcaggacgcgttcgacttcgacgg 215 ||||||| ||||| ||||||||||| |||||||| Sbjct: 115722 tctcgtcgtcgcaagacgcgttcgaattcgacgg 115689
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 269 cgccgtcgcaggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 18391064 cgccgtcgcaggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 18391112 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 94 atgatcgtgcgcacctacggccgcagatcccgc 126 ||||||||||||||||||||||||||||||||| Sbjct: 18390892 atgatcgtgcgcacctacggccgcagatcccgc 18390924 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 182 tctcgtcctcgcaggacgcgttcgacttcgacgg 215 ||||||| ||||| ||||||||||| |||||||| Sbjct: 18390971 tctcgtcgtcgcaagacgcgttcgaattcgacgg 18391004
>dbj|AK120408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091M08, full insert sequence Length = 3407 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 269 cgccgtcgcaggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 526 cgccgtcgcaggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 574 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 94 atgatcgtgcgcacctacggccgcagatcccgc 126 ||||||||||||||||||||||||||||||||| Sbjct: 354 atgatcgtgcgcacctacggccgcagatcccgc 386 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 182 tctcgtcctcgcaggacgcgttcgacttcgacgg 215 ||||||| ||||| ||||||||||| |||||||| Sbjct: 433 tctcgtcgtcgcaagacgcgttcgaattcgacgg 466
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 81.8 bits (41), Expect = 2e-12 Identities = 47/49 (95%) Strand = Plus / Plus Query: 269 cgccgtcgcaggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 |||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct: 18401117 cgccgtcgcaggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 18401165 Score = 65.9 bits (33), Expect = 1e-07 Identities = 33/33 (100%) Strand = Plus / Plus Query: 94 atgatcgtgcgcacctacggccgcagatcccgc 126 ||||||||||||||||||||||||||||||||| Sbjct: 18400945 atgatcgtgcgcacctacggccgcagatcccgc 18400977 Score = 44.1 bits (22), Expect = 0.36 Identities = 31/34 (91%) Strand = Plus / Plus Query: 182 tctcgtcctcgcaggacgcgttcgacttcgacgg 215 ||||||| ||||| ||||||||||| |||||||| Sbjct: 18401024 tctcgtcgtcgcaagacgcgttcgaattcgacgg 18401057
>gb|AY023144.1| Oryza sativa microsatellite MRG5469 containing (GCC)X8, closest to marker R2303, genomic sequence Length = 224 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 278 aggagtcctcctcgatgtgggacttcgacgaggacccgcc 317 ||||||| || ||||||||||||||||||||||||||||| Sbjct: 224 aggagtcgtcgtcgatgtgggacttcgacgaggacccgcc 185
>emb|AJ507836.1|ANI507836 Arthrobacter nicotinovorans pAO1 plasmid sequence Length = 165137 Score = 46.1 bits (23), Expect = 0.091 Identities = 29/31 (93%) Strand = Plus / Plus Query: 207 cttcgacggcggggacggggacgacgagctg 237 |||||||||||| |||||| ||||||||||| Sbjct: 132643 cttcgacggcggtgacgggaacgacgagctg 132673
>ref|XM_959002.1| Neurospora crassa OR74A hypothetical protein (NCU02101.1) partial mRNA Length = 3078 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 acgccgaccccgagcccgagc 391 ||||||||||||||||||||| Sbjct: 2584 acgccgaccccgagcccgagc 2564
>ref|XM_329290.1| Neurospora crassa OR74A hypothetical protein (NCU02101.1) partial mRNA Length = 3078 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 371 acgccgaccccgagcccgagc 391 ||||||||||||||||||||| Sbjct: 2584 acgccgaccccgagcccgagc 2564
>gb|DQ378290.1| Drosophila virilis strain Tucson 15010-1001.10 fosmid 10J19, complete sequence Length = 34783 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 57 gcgcaggcgcagctacccgcagcagcagc 85 ||||||| ||||| ||||||||||||||| Sbjct: 7302 gcgcaggtgcagcgacccgcagcagcagc 7274
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 385 cccgagccggccaccgccacg 405 ||||||||||||||||||||| Sbjct: 2589172 cccgagccggccaccgccacg 2589152
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 253 cagccccagcttttcccgccg 273 ||||||||||||||||||||| Sbjct: 1604015 cagccccagcttttcccgccg 1603995
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 372 cgccgaccccgagcccgagccggcc 396 |||||| |||||||||||||||||| Sbjct: 1843164 cgccgaacccgagcccgagccggcc 1843140
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 gccggggtcgcagccccagct 263 ||||||||||||||||||||| Sbjct: 2918567 gccggggtcgcagccccagct 2918547
>ref|XM_473029.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 759 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggcggggacggggacgacga 233 |||||||||||||||||||| Sbjct: 162 ggcggggacggggacgacga 181
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 cctcgcatacgcgcaggcgcagct 70 ||||||| |||||||||||||||| Sbjct: 2231363 cctcgcagacgcgcaggcgcagct 2231340
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgacggcggggacggggacg 229 |||||||||||||||||||| Sbjct: 55809 cgacggcggggacggggacg 55828
>gb|AC104434.2| Homo sapiens chromosome 3 clone RP11-625B23, complete sequence Length = 192758 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 cgcgcaggcgcagctacccg 75 |||||||||||||||||||| Sbjct: 25066 cgcgcaggcgcagctacccg 25047
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence Length = 3281944 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 cagcagcagcgagtcgccat 95 |||||||||||||||||||| Sbjct: 2756836 cagcagcagcgagtcgccat 2756855
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cagcagcagcgagtcgccat 95 |||||||||||||||||||| Sbjct: 3912896 cagcagcagcgagtcgccat 3912877
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 210 cgacggcggggacggggacgacgagctgtcgg 241 ||||| |||||||| ||||||||||| ||||| Sbjct: 29670 cgacgacggggacgaggacgacgagccgtcgg 29639
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence Length = 3354505 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 cagcagcagcgagtcgccat 95 |||||||||||||||||||| Sbjct: 1600139 cagcagcagcgagtcgccat 1600120
>gb|AC104184.2| Homo sapiens chromosome 3 clone RP11-188P20, complete sequence Length = 143034 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 cgcgcaggcgcagctacccg 75 |||||||||||||||||||| Sbjct: 10157 cgcgcaggcgcagctacccg 10176
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggcggggacggggacgacga 233 |||||||||||||||||||| Sbjct: 24781816 ggcggggacggggacgacga 24781835
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgacggcggggacggggacg 229 |||||||||||||||||||| Sbjct: 17563032 cgacggcggggacggggacg 17563051
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gacggcggggacggggacgacgag 234 |||||||||||| ||||||||||| Sbjct: 23629279 gacggcggggaccgggacgacgag 23629302 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 atacgcgcaggcgcagctac 72 |||||||||||||||||||| Sbjct: 9457052 atacgcgcaggcgcagctac 9457033
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 gacgacgagctgtcggcgccgggg 249 |||||||||||| ||||||||||| Sbjct: 1895316 gacgacgagctgccggcgccgggg 1895339
>gb|AF202064.1|AF202064 Bovine herpesvirus 1 nonfunctional ICP18.5 protein (ICP18.5) gene and glycoprotein B (gB) gene, partial cds Length = 1285 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgacggcggggacggggacg 229 |||||||||||||||||||| Sbjct: 323 cgacggcggggacggggacg 342
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 atacgcgcaggcgcagctac 72 |||||||||||||||||||| Sbjct: 70613 atacgcgcaggcgcagctac 70594
>dbj|AP005472.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0075M17 Length = 91422 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 cgacggcggggacggggacg 229 |||||||||||||||||||| Sbjct: 67478 cgacggcggggacggggacg 67497
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 gacggcggggacggggacgacgag 234 |||||||||||| ||||||||||| Sbjct: 70379 gacggcggggaccgggacgacgag 70402
>dbj|AK061559.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-311-D02, full insert sequence Length = 967 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggcggggacggggacgacga 233 |||||||||||||||||||| Sbjct: 312 ggcggggacggggacgacga 331
>emb|AL606627.3|OSJN00052 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067K08, complete sequence Length = 170765 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 ggcggggacggggacgacga 233 |||||||||||||||||||| Sbjct: 43532 ggcggggacggggacgacga 43551
>gb|AE014295.3| Bifidobacterium longum NCC2705, complete genome Length = 2256640 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 387 cgagccggccaccgccacgctcat 410 |||||| ||||||||||||||||| Sbjct: 1780775 cgagcccgccaccgccacgctcat 1780798 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,805,529 Number of Sequences: 3902068 Number of extensions: 1805529 Number of successful extensions: 36200 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 35158 Number of HSP's gapped (non-prelim): 1042 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)