ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46b01 |
|---|---|
| Clone Library Name | barley_pub |
>SF3B1_XENLA (O57683) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) (146 kDa nuclear protein) Length = 1307 Score = 124 bits (312), Expect = 9e-29 Identities = 74/135 (54%), Positives = 87/135 (64%), Gaps = 9/135 (6%) Frame = +3 Query: 87 WDATPKLPGGL----VTPTP--KKQRSRWDETPAS-MGSXXXXXXXXXXXXXXXXXQTPF 245 W TP+ G TPTP K++SRWDETPAS MG +TP Sbjct: 313 WAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPG---------KTPI 363 Query: 246 G--AESLATPTPGHLAARGPMTPEQYQLLRWERDIEERNRPLTDEELDSMFPQEGYKILE 419 G A ++ATPTPGH+ + MTPEQ Q RWER+I+ERNRPL+DEELD+MFP EGYK+L Sbjct: 364 GTPAMNMATPTPGHIMS---MTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLP 419 Query: 420 PPASYQPIRTPARKL 464 PPA Y PIRTPARKL Sbjct: 420 PPAGYVPIRTPARKL 434
>SF3B1_MOUSE (Q99NB9) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 124 bits (312), Expect = 9e-29 Identities = 74/135 (54%), Positives = 87/135 (64%), Gaps = 9/135 (6%) Frame = +3 Query: 87 WDATPKLPGGL----VTPTP--KKQRSRWDETPAS-MGSXXXXXXXXXXXXXXXXXQTPF 245 W TP+ G TPTP K++SRWDETPAS MG +TP Sbjct: 310 WAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPG---------KTPI 360 Query: 246 G--AESLATPTPGHLAARGPMTPEQYQLLRWERDIEERNRPLTDEELDSMFPQEGYKILE 419 G A ++ATPTPGH+ + MTPEQ Q RWER+I+ERNRPL+DEELD+MFP EGYK+L Sbjct: 361 GTPAMNMATPTPGHIMS---MTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLP 416 Query: 420 PPASYQPIRTPARKL 464 PPA Y PIRTPARKL Sbjct: 417 PPAGYVPIRTPARKL 431
>SF3B1_HUMAN (O75533) Splicing factor 3B subunit 1 (Spliceosome-associated| protein 155) (SAP 155) (SF3b155) (Pre-mRNA-splicing factor SF3b 155 kDa subunit) Length = 1304 Score = 124 bits (312), Expect = 9e-29 Identities = 74/135 (54%), Positives = 87/135 (64%), Gaps = 9/135 (6%) Frame = +3 Query: 87 WDATPKLPGGL----VTPTP--KKQRSRWDETPAS-MGSXXXXXXXXXXXXXXXXXQTPF 245 W TP+ G TPTP K++SRWDETPAS MG +TP Sbjct: 310 WAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPG---------KTPI 360 Query: 246 G--AESLATPTPGHLAARGPMTPEQYQLLRWERDIEERNRPLTDEELDSMFPQEGYKILE 419 G A ++ATPTPGH+ + MTPEQ Q RWER+I+ERNRPL+DEELD+MFP EGYK+L Sbjct: 361 GTPAMNMATPTPGHIMS---MTPEQLQAWRWEREIDERNRPLSDEELDAMFP-EGYKVLP 416 Query: 420 PPASYQPIRTPARKL 464 PPA Y PIRTPARKL Sbjct: 417 PPAGYVPIRTPARKL 431
>SF3B1_SCHPO (Q10178) U2 snRNP component prp10| Length = 1188 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/35 (54%), Positives = 24/35 (68%), Gaps = 4/35 (11%) Frame = +3 Query: 342 IEERNRP----LTDEELDSMFPQEGYKILEPPASY 434 +EE+ RP LT+EEL+ + P EGY ILEPP Y Sbjct: 268 VEEKLRPPVRLLTEEELNELLPSEGYAILEPPPGY 302
>TYSY_PROAC (Q6A761) Thymidylate synthase (EC 2.1.1.45) (TS) (TSase)| Length = 269 Score = 31.6 bits (70), Expect = 1.0 Identities = 14/51 (27%), Positives = 20/51 (39%) Frame = +2 Query: 176 GECNTWWHGSDTCRFQHSWTDTIWGREPCHANTWPSCCSWPDDSGAVPALA 328 G+ N W + W D P + + W S WPDD G + +A Sbjct: 65 GDTNVGWLHDNNIHIWDEWADENGDLGPVYGHQWRS---WPDDDGTIDQIA 112
>MAML1_HUMAN (Q92585) Mastermind-like protein 1 (Mam-1)| Length = 1016 Score = 31.6 bits (70), Expect = 1.0 Identities = 17/65 (26%), Positives = 31/65 (47%) Frame = +3 Query: 258 LATPTPGHLAARGPMTPEQYQLLRWERDIEERNRPLTDEELDSMFPQEGYKILEPPASYQ 437 + T T G ++ M W+ IEE NR + DE++ +F ++ + +P +S Sbjct: 227 MITGTVGSISQSNLMPDLNLNEQEWKELIEELNRSVPDEDMKDLFNEDFEEKKDPESSGS 286 Query: 438 PIRTP 452 +TP Sbjct: 287 ATQTP 291
>RNY1_EMENI (Q5B3K6) Ribonuclease T2-like precursor (EC 3.1.27.1) (RNase| T2-like) Length = 417 Score = 30.0 bits (66), Expect = 3.1 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 6/46 (13%) Frame = +2 Query: 182 CNTWWHGSDTCRFQHSWTDTI----WGREPC--HANTWPSCCSWPD 301 C T +HG DTC F + + W +P N+W WPD Sbjct: 52 CQTSYHGQDTCCFNYPGGQMLQTQFWDADPAVGPENSWTIHGLWPD 97
>USH2A_RAT (Q8K3K1) Usherin precursor (Usher syndrome type-2A protein homolog)| (Usher syndrome type IIa protein homolog) Length = 1512 Score = 30.0 bits (66), Expect = 3.1 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 9/45 (20%) Frame = -3 Query: 137 LGCWCDK--------PTRQLRSSIPC-PRRGGSWSNATGCRGCIC 30 LG CD P RQ R + C P S SNATGC C+C Sbjct: 905 LGSMCDPVSGQCLCLPHRQERRCVQCQPGCYSSPSNATGCLPCLC 949
>COL15_ARATH (Q9C7E8) Zinc finger protein CONSTANS-LIKE 15| Length = 433 Score = 30.0 bits (66), Expect = 3.1 Identities = 12/24 (50%), Positives = 15/24 (62%) Frame = +3 Query: 285 AARGPMTPEQYQLLRWERDIEERN 356 A G M PE + L+W RD+EE N Sbjct: 214 AGEGLMVPEMSERLKWSRDVEEIN 237
>MOAA_AERPE (Q9YEV3) Probable molybdenum cofactor biosynthesis protein A| Length = 355 Score = 29.6 bits (65), Expect = 4.0 Identities = 14/35 (40%), Positives = 20/35 (57%) Frame = +1 Query: 148 RGGTRHQRVWGVQHLVARQRHLQVSTLLDRHHLGQ 252 RGG+R ++VW V ++ L+ T L R H GQ Sbjct: 285 RGGSREEKVWRVMKILLEANALRRPTYLFRLHDGQ 319
>SCN4A_HUMAN (P35499) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (SkM1) Length = 1836 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 173 YGECNTWWHGSDTCRFQHSW--TDTIWGREPCHAN-TWPSCCSW 295 + + NT W+ +DT +W + +G + +AN TW S SW Sbjct: 287 FNDTNTTWYSNDTWYGNDTWYGNEMWYGNDSWYANDTWNSHASW 330
>CNKR2_HUMAN (Q8WXI2) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) Length = 1034 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -3 Query: 425 WRLKNLVSLLRE--HGVKLLVSERPVPLLNVA 336 W+LKNLV+ LRE GV L + +RP +L A Sbjct: 273 WQLKNLVNALREDPSGVILTLKKRPQSMLTSA 304
>CNKR2_RAT (Q9Z1T4) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) (Membrane-associated guanylate kinase-interacting protein) (MAGUIN) Length = 1032 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -3 Query: 425 WRLKNLVSLLRE--HGVKLLVSERPVPLLNVA 336 W+LKNLV+ LRE GV L + +RP +L A Sbjct: 273 WQLKNLVNALREDPSGVILTLKKRPQSMLTSA 304
>CNKR2_MOUSE (Q80YA9) Connector enhancer of kinase suppressor of ras 2| (Connector enhancer of KSR2) (CNK2) Length = 1032 Score = 29.3 bits (64), Expect = 5.2 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = -3 Query: 425 WRLKNLVSLLRE--HGVKLLVSERPVPLLNVA 336 W+LKNLV+ LRE GV L + +RP +L A Sbjct: 273 WQLKNLVNALREDPSGVILTLKKRPQSMLTSA 304
>TBCD4_HUMAN (O60343) TBC1 domain family member 4 (Akt substrate of 160 kDa)| (AS160) Length = 1298 Score = 28.9 bits (63), Expect = 6.8 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%) Frame = -2 Query: 402 PPAGTWSQAPRQ*EACSAPQCRAPTARAGTAPESSGHEQ--QDGQVLAWQGSLPQMVSVQ 229 PP+ W P E +PQ R P S+ + QDG+ + L + S + Sbjct: 618 PPSSAWQTFPE--EDSDSPQFRRRAHTFSHPPSSTKRKLNLQDGRAQGVRSPLLRQSSSE 675 Query: 228 EC*NLQVSLPCHQVLHSPYSLVSRPTSTS 142 +C NL ++ +S SL S TS S Sbjct: 676 QCSNLSSVRRMYKESNSSSSLPSLHTSFS 704
>MAML1_MOUSE (Q6T264) Mastermind-like protein 1 (Mam-1)| Length = 1020 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%) Frame = +3 Query: 330 WERDIEERNRPLTDEELDSMFPQ--EGYKILEPPAS 431 W+ IEE NR + DE++ +F + E K EPP S Sbjct: 258 WKELIEELNRSVPDEDMKDLFTEDFEEKKDPEPPGS 293
>AFP2_RAPSA (P30230) Cysteine-rich antifungal protein 2 precursor (AFP2)| Length = 80 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/38 (39%), Positives = 19/38 (50%) Frame = -2 Query: 426 LEAQESCIPPAGTWSQAPRQ*EACSAPQCRAPTARAGT 313 +EAQ+ C P+GTWS AC R AR G+ Sbjct: 27 VEAQKLCQRPSGTWSGVCGNNNACKNQCIRLEKARHGS 64
>AFP1_ARATH (P30224) Cysteine-rich antifungal protein 1 precursor (AFP1)| (Anther-specific protein S18 homolog) (Low-molecular-weight cysteine-rich protein LCR67) Length = 80 Score = 28.9 bits (63), Expect = 6.8 Identities = 16/42 (38%), Positives = 20/42 (47%) Frame = -2 Query: 438 AGMKLEAQESCIPPAGTWSQAPRQ*EACSAPQCRAPTARAGT 313 A M +EAQ+ C P+GTWS AC AR G+ Sbjct: 23 APMVVEAQKLCERPSGTWSGVCGNSNACKNQCINLEKARHGS 64
>ZYGBL_MOUSE (Q80ZJ6) Zyg-11 protein homolog (Zyg-11 homolog B-like)| Length = 779 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 428 SWRLKNLVSLLREHGVKLLVSERPVPLLNVALPPQELVLLRSHRATSSKMAR 273 +W L NLVS+ + LL+ E +PLL ++L+ + + R + +MAR Sbjct: 716 TWALYNLVSVYPDKYCPLLIKEGGMPLL------RDLIKMATARQETKEMAR 761
>DPOD3_YEAST (P47110) DNA polymerase delta subunit 3| Length = 350 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 339 DIEERNRPLTDEELDSMFPQEGYKILEPPASYQPIRTPA 455 + E P ++EE S ++GY + + PA+ P R P+ Sbjct: 275 ETEHSKEPKSEEEPSSFIDEDGYIVTKRPATSTPPRKPS 313
>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD| Length = 332 Score = 28.5 bits (62), Expect = 8.9 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +3 Query: 234 QTPFGAESLATPTPGHLAARGPMTPEQY-QLLRWERDIEERNRPLTDE 374 Q F E+ P P +AA TPE+ +L W RD N + DE Sbjct: 188 QREFNRENGRDPEPAEIAAELSSTPERVTDVLDWARDPVSLNMSVDDE 235
>BCCA_MYCTU (P0A508) Acetyl-/propionyl-coenzyme A carboxylase alpha chain| [Includes: Biotin carboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)] Length = 654 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%) Frame = +1 Query: 181 VQHLVARQRHLQVSTLLDRH----HLGQR--ALPRQH 273 ++ V R RH++V L D H HLG+R +L R+H Sbjct: 199 LERFVLRPRHIEVQVLADAHGNVVHLGERECSLQRRH 235
>BCCA_MYCBO (P0A509) Acetyl-/propionyl-coenzyme A carboxylase alpha chain| [Includes: Biotin carboxylase (EC 6.3.4.14); Biotin carboxyl carrier protein (BCCP)] Length = 654 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 6/37 (16%) Frame = +1 Query: 181 VQHLVARQRHLQVSTLLDRH----HLGQR--ALPRQH 273 ++ V R RH++V L D H HLG+R +L R+H Sbjct: 199 LERFVLRPRHIEVQVLADAHGNVVHLGERECSLQRRH 235
>SCN4A_RAT (P15390) Sodium channel protein type 4 alpha subunit (Sodium| channel protein type IV alpha subunit) (Voltage-gated sodium channel alpha subunit Nav1.4) (Sodium channel protein, skeletal muscle alpha-subunit) (Mu-1) Length = 1840 Score = 28.5 bits (62), Expect = 8.9 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 179 ECNTWWHGSDTCRFQHSWTDTIWGREPCHAN-TWPSCCSWPDDS 307 + NT W+G+DT +W +G + + N TW S SW +S Sbjct: 289 DTNTTWYGNDTWYSNDTW----YGNDTWYINDTWNSQESWAGNS 328 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,485,968 Number of Sequences: 219361 Number of extensions: 1548299 Number of successful extensions: 5092 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4845 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5075 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
