ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46b01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 438 bits (221), Expect = e-120 Identities = 408/469 (86%), Gaps = 6/469 (1%) Strand = Plus / Plus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 2546745 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 2546804 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 2546805 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 2546864 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 2546865 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 2546924 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 2546925 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 2546981 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 2546982 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 2547041 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2547042 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 2547101 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 2547102 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 2547161 Query: 418 agcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 | ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 2547162 aacctccagcttcataccaacccatacgcacaccagcaagaaagctgct 2547210 Score = 426 bits (215), Expect = e-116 Identities = 393/451 (87%), Gaps = 6/451 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 2603217 agaccccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 2603158 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 2603157 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 2603098 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 2603097 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 2603038 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 2603037 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 2602981 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 2602980 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 2602921 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 2602920 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 2602861 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 2602860 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 2602801 Query: 418 agcctccagcttcataccagcccatacgcac 448 | |||||||||||||||||||| |||||||| Sbjct: 2602800 aacctccagcttcataccagcctatacgcac 2602770 Score = 416 bits (210), Expect = e-113 Identities = 407/470 (86%), Gaps = 7/470 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 2322541 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 2322482 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 2322481 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 2322422 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 2322421 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgctagtatgggta 2322362 Query: 181 gtgcaacacctggtggcac---ggcagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| || ||||| |||||||||| |||||||||| | || Sbjct: 2322361 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 2322305 Query: 238 caccatttggggcagagagccttgccacgccaaca-cctggccatcttgctgctcgtggc 296 | |||||||| | || | |||||| ||||||||| || ||||| ||||| ||||||| Sbjct: 2322304 cgccatttggtggtgacaaccttgcgacgccaacaccccggccagattgcttctcgtggt 2322245 Query: 297 ccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaac 356 || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 2322244 ccaatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaac 2322185 Query: 357 aggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattctt 416 |||||||| || || ||||||||||| | |||||||| ||||| || |||||||||||| Sbjct: 2322184 aggcctcttacggatgaggagcttgatactatgttccctcaggaagggtacaagattctt 2322125 Query: 417 gagcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 || ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 2322124 gaacctcctgcttcataccagcccatacgcacaccagcaagaaagctgct 2322075 Score = 200 bits (101), Expect = 3e-48 Identities = 158/177 (89%) Strand = Plus / Plus Query: 287 tgctcgtggcccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattga 346 |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct: 16550468 tgctcgtggcccgatgacaccggagcagtaccagctcttgcggtgggagcgggacatcga 16550527 Query: 347 ggagcggaacaggcctctcactgacgaggagcttgactccatgttcccgcaggagggata 406 || ||| |||| |||||| ||||| ||||| |||||| ||||| ||||||||| ||| || Sbjct: 16550528 ggggcgtaacatgcctctgactgatgaggaacttgacaccatgctcccgcaggtggggta 16550587 Query: 407 caagattcttgagcctccagcttcataccagcccatacgcacccctgcaaggaagct 463 |||||||||||| ||||| ||||| || |||||||||||||| || ||||||||||| Sbjct: 16550588 caagattcttgatcctccggcttcttatcagcccatacgcacacccgcaaggaagct 16550644 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 9 actccagggaggatggctgacgcagatgcaacccctgca 47 |||||||||||||||||||| || |||| |||||||||| Sbjct: 16550241 actccagggaggatggctgatgcggatggaacccctgca 16550279
>dbj|AP005649.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0064G16 Length = 166453 Score = 438 bits (221), Expect = e-120 Identities = 408/469 (86%), Gaps = 6/469 (1%) Strand = Plus / Plus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 162666 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 162725 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 162726 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 162785 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 162786 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 162845 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 162846 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 162902 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 162903 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 162962 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 162963 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 163022 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 163023 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 163082 Query: 418 agcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 | ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 163083 aacctccagcttcataccaacccatacgcacaccagcaagaaagctgct 163131
>dbj|AP005288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_C03 Length = 103297 Score = 438 bits (221), Expect = e-120 Identities = 408/469 (86%), Gaps = 6/469 (1%) Strand = Plus / Plus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 25528 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 25587 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 25588 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 25647 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 25648 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 25707 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 25708 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 25764 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 25765 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 25824 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 25825 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 25884 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 25885 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 25944 Query: 418 agcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 | ||||||||||||||||| ||||||||||| || ||||| |||||||| Sbjct: 25945 aacctccagcttcataccaacccatacgcacaccagcaagaaagctgct 25993 Score = 426 bits (215), Expect = e-116 Identities = 393/451 (87%), Gaps = 6/451 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 82000 agaccccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 81941 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 81940 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 81881 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 81880 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 81821 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 81820 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 81764 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 81763 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 81704 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 81703 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 81644 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 81643 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 81584 Query: 418 agcctccagcttcataccagcccatacgcac 448 | |||||||||||||||||||| |||||||| Sbjct: 81583 aacctccagcttcataccagcctatacgcac 81553
>dbj|AP005191.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0479D12 Length = 148362 Score = 426 bits (215), Expect = e-116 Identities = 393/451 (87%), Gaps = 6/451 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 5439 agaccccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 5380 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 5379 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 5320 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 5319 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgcaagtatgggta 5260 Query: 181 gtgcaacacctggtggcacgg---cagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| | | ||||| |||||||||| |||||||||| | || Sbjct: 5259 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 5203 Query: 238 caccatttggggcagagagccttgccacgccaacacctggccatcttgctgctcgtggcc 297 | |||||||| | || | |||||| ||||||||||| ||||| ||||| ||||||| | Sbjct: 5202 cgccatttggtggtgacaaccttgcgacgccaacacccggccagattgcttctcgtggtc 5143 Query: 298 cgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaaca 357 | |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct: 5142 caatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaaca 5083 Query: 358 ggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattcttg 417 ||||||| || || ||||||||||| | |||||||||||||| || ||||||||||||| Sbjct: 5082 ggcctcttacggatgaggagcttgatactatgttcccgcaggaagggtacaagattcttg 5023 Query: 418 agcctccagcttcataccagcccatacgcac 448 | |||||||||||||||||||| |||||||| Sbjct: 5022 aacctccagcttcataccagcctatacgcac 4992
>dbj|AP005776.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0018G11 Length = 121084 Score = 416 bits (210), Expect = e-113 Identities = 407/470 (86%), Gaps = 7/470 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 58618 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 58559 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 58558 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 58499 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 58498 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgctagtatgggta 58439 Query: 181 gtgcaacacctggtggcac---ggcagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| || ||||| |||||||||| |||||||||| | || Sbjct: 58438 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 58382 Query: 238 caccatttggggcagagagccttgccacgccaaca-cctggccatcttgctgctcgtggc 296 | |||||||| | || | |||||| ||||||||| || ||||| ||||| ||||||| Sbjct: 58381 cgccatttggtggtgacaaccttgcgacgccaacaccccggccagattgcttctcgtggt 58322 Query: 297 ccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaac 356 || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 58321 ccaatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaac 58262 Query: 357 aggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattctt 416 |||||||| || || ||||||||||| | |||||||| ||||| || |||||||||||| Sbjct: 58261 aggcctcttacggatgaggagcttgatactatgttccctcaggaagggtacaagattctt 58202 Query: 417 gagcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 || ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 58201 gaacctcctgcttcataccagcccatacgcacaccagcaagaaagctgct 58152
>dbj|AP005721.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_E07 Length = 113187 Score = 416 bits (210), Expect = e-113 Identities = 407/470 (86%), Gaps = 7/470 (1%) Strand = Plus / Minus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 109490 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 109431 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 109430 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 109371 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 109370 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgctagtatgggta 109311 Query: 181 gtgcaacacctggtggcac---ggcagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| || ||||| |||||||||| |||||||||| | || Sbjct: 109310 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 109254 Query: 238 caccatttggggcagagagccttgccacgccaaca-cctggccatcttgctgctcgtggc 296 | |||||||| | || | |||||| ||||||||| || ||||| ||||| ||||||| Sbjct: 109253 cgccatttggtggtgacaaccttgcgacgccaacaccccggccagattgcttctcgtggt 109194 Query: 297 ccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaac 356 || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 109193 ccaatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaac 109134 Query: 357 aggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattctt 416 |||||||| || || ||||||||||| | |||||||| ||||| || |||||||||||| Sbjct: 109133 aggcctcttacggatgaggagcttgatactatgttccctcaggaagggtacaagattctt 109074 Query: 417 gagcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 || ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 109073 gaacctcctgcttcataccagcccatacgcacaccagcaagaaagctgct 109024
>dbj|AK067944.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123M24, full insert sequence Length = 4241 Score = 416 bits (210), Expect = e-113 Identities = 407/470 (86%), Gaps = 7/470 (1%) Strand = Plus / Plus Query: 1 agactccaactccagggaggatggctgacgcagatgcaacccctgcagccggtggcatta 60 |||| |||||||| ||||||||||| || || |||||||| |||||||| |||||||||| Sbjct: 798 agacaccaactcctgggaggatggccgatgcggatgcaacacctgcagctggtggcatta 857 Query: 61 ctccaggagccaccccttctggggcatgggatgctactcctaagctgcctggtgggcttg 120 ||||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||| Sbjct: 858 ctccaggtgccacaccttctggagcttgggatgctactcctaagctgcctggtgggcttg 917 Query: 121 tcacaccaacacccaagaaacagaggtcgaggtgggacgagacaccagcgagtatgggga 180 |||| |||||||||||||| ||||| ||||| ||||| ||||| || || |||||||| | Sbjct: 918 tcacgccaacacccaagaagcagagatcgagatgggatgagactcctgctagtatgggta 977 Query: 181 gtgcaacacctggtggcac---ggcagcgacacctgcaggtttcaacactcctggacaga 237 |||| |||||||| ||||| || ||||| |||||||||| |||||||||| | || Sbjct: 978 gtgctacacctggaggcactggtgctgcgacgcctgcaggtt---acactcctggtccga 1034 Query: 238 caccatttggggcagagagccttgccacgccaaca-cctggccatcttgctgctcgtggc 296 | |||||||| | || | |||||| ||||||||| || ||||| ||||| ||||||| Sbjct: 1035 cgccatttggtggtgacaaccttgcgacgccaacaccccggccagattgcttctcgtggt 1094 Query: 297 ccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattgaggagcggaac 356 || |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct: 1095 ccaatgactccagagcagtaccagctcttgcggtgggagcgggacattgaggagcggaac 1154 Query: 357 aggcctctcactgacgaggagcttgactccatgttcccgcaggagggatacaagattctt 416 |||||||| || || ||||||||||| | |||||||| ||||| || |||||||||||| Sbjct: 1155 aggcctcttacggatgaggagcttgatactatgttccctcaggaagggtacaagattctt 1214 Query: 417 gagcctccagcttcataccagcccatacgcacccctgcaaggaagctgct 466 || ||||| ||||||||||||||||||||||| || ||||| |||||||| Sbjct: 1215 gaacctcctgcttcataccagcccatacgcacaccagcaagaaagctgct 1264
>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0527E02 Length = 176826 Score = 200 bits (101), Expect = 3e-48 Identities = 158/177 (89%) Strand = Plus / Plus Query: 287 tgctcgtggcccgatgactccggagcagtaccagctcttgcggtgggagcgcgacattga 346 |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || Sbjct: 123883 tgctcgtggcccgatgacaccggagcagtaccagctcttgcggtgggagcgggacatcga 123942 Query: 347 ggagcggaacaggcctctcactgacgaggagcttgactccatgttcccgcaggagggata 406 || ||| |||| |||||| ||||| ||||| |||||| ||||| ||||||||| ||| || Sbjct: 123943 ggggcgtaacatgcctctgactgatgaggaacttgacaccatgctcccgcaggtggggta 124002 Query: 407 caagattcttgagcctccagcttcataccagcccatacgcacccctgcaaggaagct 463 |||||||||||| ||||| ||||| || |||||||||||||| || ||||||||||| Sbjct: 124003 caagattcttgatcctccggcttcttatcagcccatacgcacacccgcaaggaagct 124059 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 9 actccagggaggatggctgacgcagatgcaacccctgca 47 |||||||||||||||||||| || |||| |||||||||| Sbjct: 123656 actccagggaggatggctgatgcggatggaacccctgca 123694
>ref|NM_125823.2| Arabidopsis thaliana unknown protein AT5G64270 mRNA, complete cds Length = 4146 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 150 aggtgggacgagacaccagcgagtatggggagtgcaacacct 191 ||||||||||| |||||||| | |||||||||||| |||||| Sbjct: 1003 aggtgggacgaaacaccagccactatggggagtgctacacct 1044
>dbj|AB008268.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSJ1 Length = 83594 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Plus Query: 150 aggtgggacgagacaccagcgagtatggggagtgcaacacct 191 ||||||||||| |||||||| | |||||||||||| |||||| Sbjct: 32566 aggtgggacgaaacaccagccactatggggagtgctacacct 32607
>gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, complete sequence Length = 178169 Score = 48.1 bits (24), Expect = 0.026 Identities = 24/24 (100%) Strand = Plus / Plus Query: 125 accaacacccaagaaacagaggtc 148 |||||||||||||||||||||||| Sbjct: 140775 accaacacccaagaaacagaggtc 140798
>gb|AC133511.3| Mus musculus BAC clone RP23-413E2 from 10, complete sequence Length = 214377 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 125 accaacacccaagaaacagagg 146 |||||||||||||||||||||| Sbjct: 188297 accaacacccaagaaacagagg 188318
>gb|AC153540.4| Mus musculus 10 BAC RP23-356N9 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 198205 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 accaacacccaagaaacagagg 146 |||||||||||||||||||||| Sbjct: 161450 accaacacccaagaaacagagg 161429
>gb|AC157583.9| Mus musculus chromosome 15, clone RP24-367L4, complete sequence Length = 185401 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 gcattactccaggagccaccccttc 79 |||||||||||||| |||||||||| Sbjct: 8161 gcattactccaggacccaccccttc 8137
>gb|AC107753.10| Mus musculus chromosome 15, clone RP23-243P15, complete sequence Length = 173814 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 gcattactccaggagccaccccttc 79 |||||||||||||| |||||||||| Sbjct: 67829 gcattactccaggacccaccccttc 67805
>gb|AC163018.3| Mus musculus chromosome 15, clone RP24-366J14, complete sequence Length = 175394 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 55 gcattactccaggagccaccccttc 79 |||||||||||||| |||||||||| Sbjct: 82121 gcattactccaggacccaccccttc 82097
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 273 cctggccatcttgctgctcgtggcc 297 ||||||||||||||||| ||||||| Sbjct: 3865699 cctggccatcttgctgcccgtggcc 3865723
>gb|AC121827.3| Mus musculus BAC clone RP23-476B3 from chromosome 7, complete sequence Length = 183470 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggacagacaccatttggggc 250 |||||||||||||||||||| Sbjct: 102493 ggacagacaccatttggggc 102474
>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence Length = 239653 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aagctgcctggtgggcttgt 121 |||||||||||||||||||| Sbjct: 21202 aagctgcctggtgggcttgt 21183
>gb|AC122510.5| Mus musculus BAC clone RP24-445P13 from chromosome 6, complete sequence Length = 163800 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aagctgcctggtgggcttgt 121 |||||||||||||||||||| Sbjct: 47986 aagctgcctggtgggcttgt 47967
>ref|XM_814627.1| Trypanosoma cruzi strain CL Brener mucin-associated surface protein (MASP) (Tc00.1047053506763.130) partial mRNA Length = 1569 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 195 ggcacggcagcgacacctgc 214 |||||||||||||||||||| Sbjct: 1450 ggcacggcagcgacacctgc 1469
>gb|AC163436.3| Mus musculus chromosome 1, clone RP23-102H12, complete sequence Length = 198253 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcctggtgggcttgtcacac 126 |||||||||||||||||||| Sbjct: 41262 gcctggtgggcttgtcacac 41281
>gb|AC116316.4| Homo sapiens BAC clone RP11-1258N14 from 4, complete sequence Length = 130364 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 62 tccaggagccaccccttctg 81 |||||||||||||||||||| Sbjct: 32523 tccaggagccaccccttctg 32504
>emb|BX539312.7| Mouse DNA sequence from clone RP24-164C21 on chromosome 7, complete sequence Length = 123224 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 ggacagacaccatttggggc 250 |||||||||||||||||||| Sbjct: 24826 ggacagacaccatttggggc 24845
>gb|AF146688.1|FRNINE2 Fugu rubripes sex comb on midleg-like 2 protein (SCML2) gene, complete cds Length = 6480 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 418 agcctccagcttcataccag 437 |||||||||||||||||||| Sbjct: 3970 agcctccagcttcataccag 3951
>gb|AC102900.12| Mus musculus chromosome 1, clone RP24-315J13, complete sequence Length = 192545 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 gcctggtgggcttgtcacac 126 |||||||||||||||||||| Sbjct: 6791 gcctggtgggcttgtcacac 6810
>emb|CT030166.8| Mouse DNA sequence from clone RP23-320I11 on chromosome 13, complete sequence Length = 222942 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggacagacaccatttggggc 250 |||||||||||||||||||| Sbjct: 215163 ggacagacaccatttggggc 215144
>gb|AC149276.2| Mus musculus BAC clone RP24-316O8 from 6, complete sequence Length = 193191 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aagctgcctggtgggcttgt 121 |||||||||||||||||||| Sbjct: 149167 aagctgcctggtgggcttgt 149148 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,317,310 Number of Sequences: 3902068 Number of extensions: 3317310 Number of successful extensions: 60039 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 59928 Number of HSP's gapped (non-prelim): 97 length of query: 469 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 447 effective length of database: 17,147,199,772 effective search space: 7664798298084 effective search space used: 7664798298084 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
