ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl46a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ASPH_HUMAN (Q12797) Aspartyl/asparaginyl beta-hydroxylase (EC 1.... 28 7.2
2ENGC_SYNEL (Q8DK79) Probable GTPase engC (EC 3.6.1.-) 28 9.3
3GSPD2_DICD3 (Q01565) General secretion pathway protein D precurs... 28 9.3

>ASPH_HUMAN (Q12797) Aspartyl/asparaginyl beta-hydroxylase (EC 1.14.11.16)|
           (Aspartate beta-hydroxylase) (ASP beta-hydroxylase)
           (Peptide-aspartate beta-dioxygenase)
          Length = 757

 Score = 28.1 bits (61), Expect = 7.2
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 106 RSDGARTQSGVGSGSCARGWSRPGVER 26
           +S G  + SG GSGS + G S PG  R
Sbjct: 8   KSSGNSSSSGSGSGSTSAGSSSPGARR 34



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>ENGC_SYNEL (Q8DK79) Probable GTPase engC (EC 3.6.1.-)|
          Length = 348

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +3

Query: 33  TPGLDQPRAQDPDPTPLCVRAPSLRQR 113
           TPG +QP    PDP  L    P +RQR
Sbjct: 224 TPGFNQPELP-PDPRQLAAAFPEIRQR 249



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>GSPD2_DICD3 (Q01565) General secretion pathway protein D precursor (Pectic|
           enzymes secretion protein outD)
          Length = 710

 Score = 27.7 bits (60), Expect = 9.3
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 8   ASDRTVSLHSGSRPA-PCAGSRSNSTLCSGSVASAKG 115
           + +R  S  + SRP+ P +GS SNS   SGS  S+ G
Sbjct: 292 SGNRNSSSSNASRPSSPRSGSSSNSNSSSGSSGSSSG 328


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,974,658
Number of Sequences: 219361
Number of extensions: 282694
Number of successful extensions: 1413
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 80,573,946
effective HSP length: 14
effective length of database: 77,502,892
effective search space used: 1860069408
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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