Clone Name | bastl46a06 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (... | 56 | 4e-08 | 2 | YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I | 50 | 3e-06 | 3 | PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I) | 45 | 1e-04 | 4 | YRR2_CAEEL (Q09345) Hypothetical protein R144.2 | 32 | 1.1 |
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>PCF11_HUMAN (O94913) Pre-mRNA cleavage complex 2 protein Pcf11 (Pre-mRNA| cleavage complex II protein Pcf11) (Fragment) Length = 1654 Score = 56.2 bits (134), Expect = 4e-08 Identities = 29/69 (42%), Positives = 41/69 (59%) Frame = +3 Query: 243 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 422 Y+ +L +LTFN KP I LTI+A ++ + P +KLP +YL+DSI Sbjct: 121 YQSSLEDLTFNSKPHINMLTILAEENLPFAKEIVSLIEAQTA-KAPSSEKLPVMYLMDSI 179 Query: 423 VKNIGREYV 449 VKN+GREY+ Sbjct: 180 VKNVGREYL 188
>YD14_SCHPO (Q10237) Hypothetical protein C4G9.04c in chromosome I| Length = 638 Score = 50.1 bits (118), Expect = 3e-06 Identities = 31/68 (45%), Positives = 35/68 (51%) Frame = +3 Query: 243 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 422 Y AL +LTFN KPII LT IA Q + P KLP+LYLLDSI Sbjct: 8 YLSALEDLTFNSKPIIHTLTYIA-QENEPYAISIVNAIEKHIQKCPPNCKLPALYLLDSI 66 Query: 423 VKNIGREY 446 KN+G Y Sbjct: 67 SKNLGAPY 74
>PCF11_YEAST (P39081) Protein PCF11 (protein 1 of CF I)| Length = 626 Score = 44.7 bits (104), Expect = 1e-04 Identities = 27/72 (37%), Positives = 37/72 (51%) Frame = +3 Query: 231 VVGVYKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYL 410 +V + L ELTFN +PIIT LT +A ++ +P +QKL + Y Sbjct: 8 IVKDFNSILEELTFNSRPIITTLTKLAEENISCAQYFVDAIESRIEKCMP-KQKLYAFYA 66 Query: 411 LDSIVKNIGREY 446 LDSI KN+G Y Sbjct: 67 LDSICKNVGSPY 78
>YRR2_CAEEL (Q09345) Hypothetical protein R144.2| Length = 823 Score = 31.6 bits (70), Expect = 1.1 Identities = 23/64 (35%), Positives = 29/64 (45%) Frame = +3 Query: 243 YKEALAELTFNCKPIITELTIIAGQHXXXXXXXXXXXXXXXXLEVPVEQKLPSLYLLDSI 422 Y+E LAEL N K I LTI+A P QKL +Y+ DSI Sbjct: 11 YRETLAELRNNNKTQINLLTILADDFKKAAPQIVEVIERHLTTCSP-SQKLLVMYVCDSI 69 Query: 423 VKNI 434 +KN+ Sbjct: 70 LKNV 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 41,172,857 Number of Sequences: 219361 Number of extensions: 580185 Number of successful extensions: 1576 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1555 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1571 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3072927439 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)