Clone Name | bastl46a06 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_480436.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3078 Score = 242 bits (122), Expect = 9e-61 Identities = 173/190 (91%) Strand = Plus / Plus Query: 261 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 320 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 362 Query: 321 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatcctcgaggtgcca 380 || || ||||| || ||||| ||||||||||||||||||||||||||| |||||| | Sbjct: 363 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatcgcggaggtgtct 422 Query: 381 gtcgagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattggacga 440 | ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 423 gccgaccagaaattaccatctttgtatctgctagacagtattgtgaagaacataggacga 482 Query: 441 gaatatgtag 450 |||||||||| Sbjct: 483 gaatatgtag 492
>dbj|AK099689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013073B17, full insert sequence Length = 3320 Score = 242 bits (122), Expect = 9e-61 Identities = 173/190 (91%) Strand = Plus / Plus Query: 261 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 320 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 303 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 362 Query: 321 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatcctcgaggtgcca 380 || || ||||| || ||||| ||||||||||||||||||||||||||| |||||| | Sbjct: 363 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatcgcggaggtgtct 422 Query: 381 gtcgagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattggacga 440 | ||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 423 gccgaccagaaattaccatctttgtatctgctagacagtattgtgaagaacataggacga 482 Query: 441 gaatatgtag 450 |||||||||| Sbjct: 483 gaatatgtag 492
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 151 bits (76), Expect = 2e-33 Identities = 100/108 (92%) Strand = Plus / Minus Query: 261 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 320 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 5121478 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 5121419 Query: 321 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 368 || || ||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 5121418 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 5121371 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 387 cagaaattgccatctttgtatctgctagacagtattgtgaagaacattggacgagaatat 446 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 5120283 cagaaattaccatctttgtatctgctagacagtattgtgaagaacataggacgagaatat 5120224 Query: 447 gtag 450 |||| Sbjct: 5120223 gtag 5120220
>dbj|AP004656.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0020B10 Length = 136175 Score = 151 bits (76), Expect = 2e-33 Identities = 100/108 (92%) Strand = Plus / Minus Query: 261 gagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgcgggccagcac 320 |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct: 71242 gagctcacgttcaactgcaagcccatcatcaccgagctcaccatcatcgccgggcagcac 71183 Query: 321 gcagcgctcgctgctaggggcatcgccgacgccatctgcgcccgcatc 368 || || ||||| || ||||| ||||||||||||||||||||||||||| Sbjct: 71182 gcggccctcgccgcgagggggatcgccgacgccatctgcgcccgcatc 71135 Score = 111 bits (56), Expect = 2e-21 Identities = 62/64 (96%) Strand = Plus / Minus Query: 387 cagaaattgccatctttgtatctgctagacagtattgtgaagaacattggacgagaatat 446 |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 70047 cagaaattaccatctttgtatctgctagacagtattgtgaagaacataggacgagaatat 69988 Query: 447 gtag 450 |||| Sbjct: 69987 gtag 69984
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 252 gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 310 ||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct: 22270861 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 22270803
>dbj|AP006171.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0070E11 Length = 142855 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 252 gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 310 ||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct: 90759 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 90701
>dbj|AP005558.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1155_H10 Length = 140475 Score = 77.8 bits (39), Expect = 3e-11 Identities = 54/59 (91%) Strand = Plus / Minus Query: 252 gccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatcgc 310 ||||||| |||||||||||||||| |||||||||||||||| | |||||||||||||| Sbjct: 32869 gccctcggggagctcaccttcaactccaagcccatcatcaccaacctcaccatcatcgc 32811
>dbj|AK065725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035O15, full insert sequence Length = 4175 Score = 63.9 bits (32), Expect = 4e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 267 accttcaactgcaagcccatcatcaccgagctcaccatcatcgc 310 |||||||||| |||||||||||||||| | |||||||||||||| Sbjct: 445 accttcaactccaagcccatcatcaccaacctcaccatcatcgc 488 Score = 42.1 bits (21), Expect = 1.6 Identities = 69/85 (81%) Strand = Plus / Plus Query: 353 catctgcgcccgcatcctcgaggtgccagtcgagcagaaattgccatctttgtatctgct 412 |||||||||| |||||||||||| ||| || ||||| | |||||| ||||||| || Sbjct: 528 catctgcgccaacatcctcgaggttccaagtgaacagaagctaccatctctgtatctact 587 Query: 413 agacagtattgtgaagaacattgga 437 ||||||||||| || || |||||| Sbjct: 588 tgacagtattgtcaaaaatattgga 612
>ref|NM_148232.2| Arabidopsis thaliana unknown protein AT4G04885 mRNA, complete cds Length = 3102 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 384 gagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattgg 436 ||||| || ||||||||| ||||||| ||||||| ||||| ||||||||||| Sbjct: 454 gagcaaaagttgccatctctgtatcttttagacagcattgttaagaacattgg 506
>emb|AL161502.2|ATCHRIV14 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 14 Length = 198563 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 384 gagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattgg 436 ||||| || ||||||||| ||||||| ||||||| ||||| ||||||||||| Sbjct: 4602 gagcaaaagttgccatctctgtatcttttagacagcattgttaagaacattgg 4654
>emb|AL161501.2|ATCHRIV13 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13 Length = 200001 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 384 gagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattgg 436 ||||| || ||||||||| ||||||| ||||||| ||||| ||||||||||| Sbjct: 199603 gagcaaaagttgccatctctgtatcttttagacagcattgttaagaacattgg 199655
>dbj|AK119152.1| Arabidopsis thaliana At4g04885 mRNA for unknown protein, complete cds, clone: RAFL21-50-C04 Length = 2713 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 384 gagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattgg 436 ||||| || ||||||||| ||||||| ||||||| ||||| ||||||||||| Sbjct: 436 gagcaaaagttgccatctctgtatcttttagacagcattgttaagaacattgg 488
>gb|AF118223.2|T4B21 Arabidopsis thaliana BAC T4B21 Length = 91470 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Plus Query: 384 gagcagaaattgccatctttgtatctgctagacagtattgtgaagaacattgg 436 ||||| || ||||||||| ||||||| ||||||| ||||| ||||||||||| Sbjct: 87925 gagcaaaagttgccatctctgtatcttttagacagcattgttaagaacattgg 87977
>gb|DQ226858.1| Boechera divaricarpa isolate SLW-C-E05 mRNA sequence Length = 243 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 132 tcctccgccgctgctgcagcccc 154 ||||||||||||||||||||||| Sbjct: 102 tcctccgccgctgctgcagcccc 80
>ref|XM_677215.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN9038.2), mRNA Length = 1329 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 209 agaggagccgaaggcggccgcg 230 |||||||||||||||||||||| Sbjct: 1065 agaggagccgaaggcggccgcg 1086
>ref|XM_466261.1| Oryza sativa (japonica cultivar-group), mRNA Length = 873 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 cgcggctgcgcgaggaggcgg 207 ||||||||||||||||||||| Sbjct: 757 cgcggctgcgcgaggaggcgg 777
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 188 gcggctgcgcgaggaggcggg 208 ||||||||||||||||||||| Sbjct: 286728 gcggctgcgcgaggaggcggg 286708
>emb|BX067988.1|CNS09OMG Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 721 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 tccgccgctgctgcagcccca 155 ||||||||||||||||||||| Sbjct: 661 tccgccgctgctgcagcccca 641
>emb|BX067987.1|CNS09OMF Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC52AA01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tccgccgctgctgcagcccca 155 ||||||||||||||||||||| Sbjct: 575 tccgccgctgctgcagcccca 595
>emb|BX049757.1|CNS09AK1 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 798 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 tccgccgctgctgcagcccca 155 ||||||||||||||||||||| Sbjct: 660 tccgccgctgctgcagcccca 640
>emb|BX049756.1|CNS09AK0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC25DD06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 955 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tccgccgctgctgcagcccca 155 ||||||||||||||||||||| Sbjct: 602 tccgccgctgctgcagcccca 622
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aggcggccgcggtggtgggcg 240 ||||||||||||||||||||| Sbjct: 21493749 aggcggccgcggtggtgggcg 21493769 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aggcggccgcggtggtgggc 239 |||||||||||||||||||| Sbjct: 20052876 aggcggccgcggtggtgggc 20052857
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 cgcggctgcgcgaggaggcgg 207 ||||||||||||||||||||| Sbjct: 21332152 cgcggctgcgcgaggaggcgg 21332172
>dbj|AP005458.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0567G03 Length = 196834 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aggcggccgcggtggtgggcg 240 ||||||||||||||||||||| Sbjct: 50933 aggcggccgcggtggtgggcg 50953
>dbj|AP005456.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0513E02 Length = 141477 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aggcggccgcggtggtgggcg 240 ||||||||||||||||||||| Sbjct: 128249 aggcggccgcggtggtgggcg 128269
>dbj|AP005883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0435E12 Length = 143188 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 cgcggctgcgcgaggaggcgg 207 ||||||||||||||||||||| Sbjct: 114687 cgcggctgcgcgaggaggcgg 114707
>ref|XM_566427.1| Anopheles gambiae str. PEST ENSANGP00000016923 (ENSANGG00000014434), partial mRNA Length = 1155 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tccgccgctgctgcagcccca 155 ||||||||||||||||||||| Sbjct: 392 tccgccgctgctgcagcccca 412
>dbj|AK069227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018C03, full insert sequence Length = 984 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aggcggccgcggtggtgggcg 240 ||||||||||||||||||||| Sbjct: 382 aggcggccgcggtggtgggcg 402
>dbj|AK063099.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-111-C05, full insert sequence Length = 958 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 aggcggccgcggtggtgggcg 240 ||||||||||||||||||||| Sbjct: 375 aggcggccgcggtggtgggcg 395
>emb|BX470073.8| Zebrafish DNA sequence from clone DKEY-239D21 in linkage group 20, complete sequence Length = 146568 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 210 gaggagccgaaggcggccgcggtgg 234 |||||||||||| |||||||||||| Sbjct: 137261 gaggagccgaagccggccgcggtgg 137285
>emb|BX005081.6| Zebrafish DNA sequence from clone CH211-69M16 in linkage group 7, complete sequence Length = 168607 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 210 gaggagccgaaggcggccgcggtgg 234 |||||||||||| |||||||||||| Sbjct: 93392 gaggagccgaagccggccgcggtgg 93368
>dbj|D38214.1|STMCTS Streptomyces aureofaciens cts4, cts6 and cts8 genes, complete cds Length = 4422 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 241 tctacaaggaggccctcgccgagctcacc 269 |||||||||||||| ||| |||||||||| Sbjct: 4013 tctacaaggaggccttcgacgagctcacc 4041
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 gctcaccatcatcgcgggcc 315 |||||||||||||||||||| Sbjct: 999125 gctcaccatcatcgcgggcc 999106
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 agccgaaggcggccgcggtg 233 |||||||||||||||||||| Sbjct: 350819 agccgaaggcggccgcggtg 350838
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 ccgcgcgcggctgcgcgagg 201 |||||||||||||||||||| Sbjct: 2624483 ccgcgcgcggctgcgcgagg 2624464 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tccgcgcgcggctgcgcgag 200 |||||||||||||||||||| Sbjct: 1219991 tccgcgcgcggctgcgcgag 1220010
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 196 gcgaggaggcgggagaggagccgaaggcggccgcgg 231 |||| ||||||||||||||| | |||||||| |||| Sbjct: 34048201 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34048166
>gb|AC158612.7| Mus musculus 10 BAC RP23-39I3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206234 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 104 tttcccagaaaccctagatctccc 127 ||||||||||| |||||||||||| Sbjct: 79412 tttcccagaaatcctagatctccc 79435
>gb|AC158603.6| Mus musculus 10 BAC RP24-466C12 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149929 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 tttcccagaaaccctagatctccc 127 ||||||||||| |||||||||||| Sbjct: 1702 tttcccagaaatcctagatctccc 1679
>emb|CR688180.2|CNS0FTY8 Tetraodon nigroviridis full-length cDNA Length = 1182 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 136 ccgccgctgctgcagcccca 155 |||||||||||||||||||| Sbjct: 1129 ccgccgctgctgcagcccca 1110
>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16 Length = 348074 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ggcggccgcggtggtgggcg 240 |||||||||||||||||||| Sbjct: 141142 ggcggccgcggtggtgggcg 141123
>emb|BX640434.1| Bordetella parapertussis strain 12822, complete genome; segment 12/14 Length = 344805 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 221 ggcggccgcggtggtgggcg 240 |||||||||||||||||||| Sbjct: 93823 ggcggccgcggtggtgggcg 93804
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggcggccgcggtggtgggcg 240 |||||||||||||||||||| Sbjct: 250048 ggcggccgcggtggtgggcg 250067
>emb|AJ543650.1|RSP543650 Rhodobacter sphaeroides smc gene Length = 3456 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 ccgcgcgcggctgcgcgagg 201 |||||||||||||||||||| Sbjct: 2178 ccgcgcgcggctgcgcgagg 2197
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0011A24, from chromosome 10, complete sequence Length = 176832 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaccctagcccgcgccgcc 102 |||||||||||||||||||| Sbjct: 105198 aaaccctagcccgcgccgcc 105217
>gb|AE005705.1| Caulobacter crescentus CB15 section 31 of 359 of the complete genome Length = 11217 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 312 ggccagcacgcagcgctcgctgct 335 |||||||||| ||||||||||||| Sbjct: 5694 ggccagcacgaagcgctcgctgct 5717
>gb|AC149634.8| Medicago truncatula clone mth2-5i17, complete sequence Length = 116601 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 agacagtattgtgaagaaca 432 |||||||||||||||||||| Sbjct: 46674 agacagtattgtgaagaaca 46693
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaatcccaaattaatccc 20 |||||||||||||||||||| Sbjct: 24978674 aaaaatcccaaattaatccc 24978693
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 gcccgcgccgccctttccca 110 |||||||||||||||||||| Sbjct: 147827 gcccgcgccgccctttccca 147808
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaccctagcccgcgccgcc 102 |||||||||||||||||||| Sbjct: 4799918 aaaccctagcccgcgccgcc 4799937
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggagccgaaggcggccgcgg 231 |||||||||||||||||||| Sbjct: 22134830 ggagccgaaggcggccgcgg 22134849
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 196 gcgaggaggcgggagaggagccgaaggcggccgcgg 231 |||| ||||||||||||||| | |||||||| |||| Sbjct: 34138673 gcgacgaggcgggagaggaggcaaaggcggcggcgg 34138638
>gb|AC120381.13| Mus musculus chromosome 5, clone RP24-266G11, complete sequence Length = 166871 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 4 aatcccaaattaatcccaac 23 |||||||||||||||||||| Sbjct: 75336 aatcccaaattaatcccaac 75355
>gb|AC007433.16|AC007433 Mus musculus chromosome 10, clone RP21-340M5, complete sequence Length = 125105 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 tttcccagaaaccctagatctccc 127 ||||||||||| |||||||||||| Sbjct: 123866 tttcccagaaatcctagatctccc 123843
>gb|AC104433.8| Oryza sativa chromosome 3 BAC OJ1754_E06 genomic sequence, complete sequence Length = 163828 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Minus Query: 196 gcgaggaggcgggagaggagccgaaggcggccgcgg 231 |||| ||||||||||||||| | |||||||| |||| Sbjct: 12013 gcgacgaggcgggagaggaggcaaaggcggcggcgg 11978
>dbj|AB166747.1| Mus musculus Trpm2 mRNA for transient receptor potential cation channel, subfamily M, member 2, complete cds Length = 6069 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 tttcccagaaaccctagatctccc 127 ||||||||||| |||||||||||| Sbjct: 5977 tttcccagaaatcctagatctccc 5954
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 40.1 bits (20), Expect = 6.4 Identities = 32/36 (88%) Strand = Plus / Plus Query: 196 gcgaggaggcgggagaggagccgaaggcggccgcgg 231 |||| ||||||||||||||| | |||||||| |||| Sbjct: 9490 gcgacgaggcgggagaggaggcaaaggcggcggcgg 9525
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 359 cgcccgcatcctcgaggtgc 378 |||||||||||||||||||| Sbjct: 4115613 cgcccgcatcctcgaggtgc 4115594 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 ggcggccgcggtggtgggcg 240 |||||||||||||||||||| Sbjct: 216228 ggcggccgcggtggtgggcg 216247
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cgcgcggctgcgcgaggagg 204 |||||||||||||||||||| Sbjct: 5372546 cgcgcggctgcgcgaggagg 5372527
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 225 gccgcggtggtgggcgtctacaag 248 |||||||||||||||||| ||||| Sbjct: 727256 gccgcggtggtgggcgtcgacaag 727233
>dbj|AP004810.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1068H08 Length = 152794 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aggcggccgcggtggtgggc 239 |||||||||||||||||||| Sbjct: 41150 aggcggccgcggtggtgggc 41131
>dbj|AP005125.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0058I18 Length = 151453 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 ggagccgaaggcggccgcgg 231 |||||||||||||||||||| Sbjct: 88486 ggagccgaaggcggccgcgg 88505
>dbj|AK109557.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-125-D08, full insert sequence Length = 1630 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 ggagccgaaggcggccgcgg 231 |||||||||||||||||||| Sbjct: 657 ggagccgaaggcggccgcgg 638
>dbj|AK101720.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033061A09, full insert sequence Length = 2576 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcccgcgccgccctttccca 110 |||||||||||||||||||| Sbjct: 278 gcccgcgccgccctttccca 297
>emb|AJ322736.1|HSA322736 Homo sapiens genomic sequence surrounding NotI site, clone NR1-OO2C Length = 735 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 210 gaggagccgaaggcggccgcggtg 233 |||||||||||||||| ||||||| Sbjct: 176 gaggagccgaaggcgggcgcggtg 153
>dbj|AK058589.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-017-G05, full insert sequence Length = 1690 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 aggcggccgcggtggtgggc 239 |||||||||||||||||||| Sbjct: 350 aggcggccgcggtggtgggc 331
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence Length = 210614 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cgcgcggctgcgcgaggagg 204 |||||||||||||||||||| Sbjct: 119278 cgcgcggctgcgcgaggagg 119259
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 aaaccctagcccgcgccgcc 102 |||||||||||||||||||| Sbjct: 4800739 aaaccctagcccgcgccgcc 4800758
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 gcccgcgccgccctttccca 110 |||||||||||||||||||| Sbjct: 147827 gcccgcgccgccctttccca 147808
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 aaaaatcccaaattaatccc 20 |||||||||||||||||||| Sbjct: 24906880 aaaaatcccaaattaatccc 24906899
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 91 gcccgcgccgccctttccca 110 |||||||||||||||||||| Sbjct: 157166 gcccgcgccgccctttccca 157185
>emb|AL928754.2|CNS08CBR Oryza sativa chromosome 12, . BAC OSJNBa0056D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146686 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aaaaatcccaaattaatccc 20 |||||||||||||||||||| Sbjct: 128493 aaaaatcccaaattaatccc 128474
>gb|AF019407.1|AF019407 Caulobacter crescentus GTP-binding protein (cgtA) gene, complete cds Length = 1200 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 312 ggccagcacgcagcgctcgctgct 335 |||||||||| ||||||||||||| Sbjct: 702 ggccagcacgaagcgctcgctgct 679
>emb|AL773585.7| Mouse DNA sequence from clone RP23-16D18 on chromosome 2, complete sequence Length = 207100 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 gccctttcccagaaacccta 119 |||||||||||||||||||| Sbjct: 157442 gccctttcccagaaacccta 157461
>dbj|D55717.1| Porcine rotavirus mRNA for RGD-containing collagen associated protein, complete cds Length = 2819 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 263 gctcaccttcaactgcaagcccatcatc 290 ||||||| ||||| |||||||||||||| Sbjct: 1199 gctcaccatcaacggcaagcccatcatc 1226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,238,709 Number of Sequences: 3902068 Number of extensions: 4238709 Number of successful extensions: 87570 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85660 Number of HSP's gapped (non-prelim): 1909 length of query: 471 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 449 effective length of database: 17,147,199,772 effective search space: 7699092697628 effective search space used: 7699092697628 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)