ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46a04 |
|---|---|
| Clone Library Name | barley_pub |
>KIF12_MOUSE (Q9D2Z8) Kinesin-like protein KIF12| Length = 642 Score = 32.0 bits (71), Expect = 0.62 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 15/46 (32%) Frame = +1 Query: 316 PRRSPGKAKPPKKRSISD---------------LLASAPPLDVSPA 408 P SPG AKPP++RS SD ++ SAPPL P+ Sbjct: 544 PPPSPGSAKPPRERSQSDWTQTRVLAEMLMGEEVVPSAPPLSAGPS 589
>CSKI1_MOUSE (Q6P9K8) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 31.6 bits (70), Expect = 0.81 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -3 Query: 258 VRPPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPPRKST 85 V+PP P+ + S+ + QG+PT + P SP+ +R G V PP T Sbjct: 1224 VKPPVSPKPILSQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPT 1281
>PKN3_HUMAN (Q6P5Z2) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein| kinase PKN-beta) (Protein-kinase C-related kinase 3) Length = 889 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/66 (33%), Positives = 28/66 (42%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPPRKSTCDFS 73 PPPKP RLY + ++ TP +R PH + P RG PPR Sbjct: 509 PPPKPPRLYLPQEPTSEETPRTKR---PH---MEPRTRRGPSPPASPTRKPPRLQDFRCL 562 Query: 72 SFFGRG 55 + GRG Sbjct: 563 AVLGRG 568
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 30.4 bits (67), Expect = 1.8 Identities = 17/58 (29%), Positives = 27/58 (46%) Frame = -3 Query: 258 VRPPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPPRKST 85 V+PP P+ + ++ + QG+PT + P SP+ +R G V PP T Sbjct: 1223 VKPPVSPKPILAQPVSKIQGSPTPASKKVPLPGPGSPEVKRAHGTPPPVSPKPPPPPT 1280
>PKN3_MOUSE (Q8K045) Serine/threonine-protein kinase N3 (EC 2.7.11.13) (Protein| kinase PKN-beta) (Protein-kinase C-related kinase 3) Length = 878 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/30 (53%), Positives = 19/30 (63%) Frame = -3 Query: 255 RPPPKPRRLYSREMFDAQGTPTLRRRLTPH 166 +PPPKP RLY +E A GTP +R PH Sbjct: 499 KPPPKPPRLYLQE--PAPGTPCTKR---PH 523
>NBR1_MOUSE (P97432) Next to BRCA1 gene 1 protein (Neighbor of BRCA1 gene 1| protein) (Membrane component, chromosome 17, surface marker 2) Length = 988 Score = 29.6 bits (65), Expect = 3.1 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = +1 Query: 322 RSPGKAKPPKKRSISDLLASAPPLDVSP 405 R P + P+++SISD+L ++ PLD P Sbjct: 800 RLPERESQPQEQSISDILTTSQPLDTVP 827
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 29.6 bits (65), Expect = 3.1 Identities = 19/56 (33%), Positives = 25/56 (44%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPPRKST 85 PPP PRR S + + RR +P RR SP +R PPP++ T Sbjct: 557 PPPPPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPS-----PPPKRRT 607
>G3P_AERPE (Q9YFS9) Glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.59)| (GAPDH) (NAD(P)-dependent glyceraldehyde-3-phosphate dehydrogenase) Length = 343 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/28 (46%), Positives = 20/28 (71%) Frame = +1 Query: 337 AKPPKKRSISDLLASAPPLDVSPAGDSG 420 AKP +KR + + LASAP + + +GD+G Sbjct: 231 AKPVEKREVLETLASAPRIMLVSSGDTG 258
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 29.6 bits (65), Expect = 3.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = -3 Query: 144 GERGGGHGCDVGVPPPRKSTCDFSSFFGRGEMRRSRLE 31 G GGG G +G PPP +++ RG +SR + Sbjct: 299 GGGGGGGGGGMGGPPPPPMNMGYNNMVHRGRQNKSRFQ 336
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 29.3 bits (64), Expect = 4.0 Identities = 19/60 (31%), Positives = 24/60 (40%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPPRKSTCDFS 73 P P PRR + + P RRR + +R SP R PPPR+ D S Sbjct: 730 PSPPPRRRQYSDEPRSPSPPPRRRRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDS 789
>G45IP_MOUSE (Q9CR59) Growth arrest and DNA-damage-inducible| proteins-interacting protein 1 Length = 222 Score = 28.9 bits (63), Expect = 5.3 Identities = 21/52 (40%), Positives = 26/52 (50%) Frame = -3 Query: 255 RPPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPP 100 R PP PRR D + T R +LTP R V+ ++ G HG GVPP Sbjct: 26 RAPPPPRRRPGPHSPDPENLLTPRWQLTP--RYVA---KQFGRHGAISGVPP 72
>ENO2_YEAST (P00925) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2)| (2-phospho-D-glycerate hydro-lyase 2) Length = 436 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 234 RLYSREMFDAQGTPTLRRRLTPHA---RRVSPDGERGGGH 124 ++Y+R ++D++G PT+ LT R + P G G H Sbjct: 4 KVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVH 43
>ENO1_YEAST (P00924) Enolase 1 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 1)| (2-phospho-D-glycerate hydro-lyase 1) Length = 436 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 234 RLYSREMFDAQGTPTLRRRLTPHA---RRVSPDGERGGGH 124 ++Y+R ++D++G PT+ LT R + P G G H Sbjct: 4 KVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGVH 43
>ENO_KLULA (Q70CP7) Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase)| (2-phospho-D-glycerate hydro-lyase) Length = 437 Score = 28.5 bits (62), Expect = 6.9 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 234 RLYSREMFDAQGTPTLRRRLTPHA---RRVSPDGERGGGH 124 ++Y+R ++D++G PT+ LT R + P G G H Sbjct: 5 KVYARSVYDSRGNPTVEVELTTEKGTFRSIVPSGASTGVH 44
>SFR14_MOUSE (Q8CH09) Putative splicing factor, arginine/serine-rich 14| (Arginine/serine-rich splicing factor 14) Length = 1067 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 2/45 (4%) Frame = -3 Query: 261 LVRPPPKPRRLYSREMFDAQGTPTLRRRLTPHARR--VSPDGERG 133 +V P P + R M AQ +L+RRL P RR + G RG Sbjct: 629 IVERRPTPAQCAVRAMLYAQAVRSLKRRLLPWQRRRLIRSQGPRG 673
>G45IP_RAT (Q5XJW2) Growth arrest and DNA-damage-inducible| proteins-interacting protein 1 Length = 228 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/50 (36%), Positives = 23/50 (46%) Frame = -3 Query: 249 PPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPP 100 PP PRR + D + T R +LTP ++ G HG GVPP Sbjct: 28 PPPPRRRPAPHWPDRENLMTPRWQLTPRYA-----AKQFGRHGAISGVPP 72
>PDCD7_HUMAN (Q8N8D1) Programmed cell death protein 7 (ES18) (HES18)| Length = 485 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPP 97 PPP P+R F P L+ L R + GGG G VPPP Sbjct: 38 PPPLPQR---PGPFPGASAPFLQPPLALQPRASAEASRGGGGAGAFYPVPPP 86
>ENO2_CANGA (Q6FQY4) Enolase 2 (EC 4.2.1.11) (2-phosphoglycerate dehydratase 2)| (2-phospho-D-glycerate hydro-lyase 2) Length = 437 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%) Frame = -3 Query: 234 RLYSREMFDAQGTPTLRRRLTPHA---RRVSPDGERGGGH 124 ++Y+R ++D++G PT+ LT R + P G G H Sbjct: 5 KVYARSVYDSRGNPTVEVELTTEKGVFRSIVPSGASTGIH 44
>HXA3_MOUSE (P02831) Homeobox protein Hox-A3 (Hox-1.5) (MO-10)| Length = 443 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGH 124 PPP P++ Y+ A GTP PHA + +G G H Sbjct: 322 PPPPPQKRYTAAGSGAGGTPD----YDPHAHGLQGNGSYGTPH 360
>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)| Length = 443 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGH 124 PPP P++ Y+ A GTP PHA + +G G H Sbjct: 321 PPPPPQKRYTAAGAGAGGTPD----YDPHAHGLQGNGSYGTPH 359
>PDCD7_MOUSE (Q9WTY1) Programmed cell death protein 7 (ES18)| Length = 482 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/52 (34%), Positives = 21/52 (40%) Frame = -3 Query: 252 PPPKPRRLYSREMFDAQGTPTLRRRLTPHARRVSPDGERGGGHGCDVGVPPP 97 PPP P+R F P L+ L R + GGG G VPPP Sbjct: 38 PPPLPQR---PGPFPGASAPFLQPPLALQPRAPAEASRGGGGGGAFFPVPPP 86 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 40,216,005 Number of Sequences: 219361 Number of extensions: 783306 Number of successful extensions: 3209 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3205 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
