ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl46a04 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB108675.1| Mus musculus Sox11 mRNA for transcriptional factor SOX11, complete cds Length = 1188 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcag 304 |||||||||||||||||||||||| Sbjct: 684 ctgctgctgcgtcggcggcggcag 661
>gb|BC078643.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone MGC:78354 IMAGE:30144974), complete cds Length = 2022 Score = 48.1 bits (24), Expect = 0.023 Identities = 24/24 (100%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcag 304 |||||||||||||||||||||||| Sbjct: 985 ctgctgctgcgtcggcggcggcag 962
>ref|NM_188305.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 582 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Plus Query: 237 gaggtttcggtggtgggcggacgagttggcc 267 |||||| |||||||||||||||||| ||||| Sbjct: 78 gaggttccggtggtgggcggacgagctggcc 108
>ref|NM_009234.5| Mus musculus SRY-box containing gene 11 (Sox11), mRNA Length = 7497 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 987 tgctgctgcgtcggcggcggcag 965
>dbj|AK146514.1| Mus musculus 17 days embryo heart cDNA, RIKEN full-length enriched library, clone:I920019F16 product:SRY-box containing gene 11, full insert sequence Length = 2877 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 953 tgctgctgcgtcggcggcggcag 931
>dbj|AK165693.1| Mus musculus 14 days embryo lung cDNA, RIKEN full-length enriched library, clone:G630001I15 product:SRY-box containing gene 11, full insert sequence Length = 2824 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 988 tgctgctgcgtcggcggcggcag 966
>dbj|AK165005.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130116M20 product:SRY-box containing gene 11, full insert sequence Length = 2829 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 992 tgctgctgcgtcggcggcggcag 970
>tpg|BK001484.1| TPA: TPA_exp: Mus musculus SRY-box containing protein (Sox11) mRNA, complete cds Length = 7497 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 987 tgctgctgcgtcggcggcggcag 965
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gaggtttcggtggtgggcggacgagttggcc 267 |||||| |||||||||||||||||| ||||| Sbjct: 5597934 gaggttccggtggtgggcggacgagctggcc 5597904 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 158 cggcgagcatgaggggtgaggcggcggcggaggg 191 |||||||||||||||| | ||||| ||||||||| Sbjct: 5598019 cggcgagcatgaggggagcggcgggggcggaggg 5597986 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 97 cggagggggc-acgccgacgtcgcatcc 123 |||||||||| ||||||||||||||||| Sbjct: 19219592 cggagggggccacgccgacgtcgcatcc 19219565 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cggagggggcacgccgacgtcgca 120 |||||||| ||||||||||||||| Sbjct: 6935928 cggaggggccacgccgacgtcgca 6935905
>dbj|AP003105.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0489A05 Length = 158815 Score = 46.1 bits (23), Expect = 0.092 Identities = 29/31 (93%) Strand = Plus / Minus Query: 237 gaggtttcggtggtgggcggacgagttggcc 267 |||||| |||||||||||||||||| ||||| Sbjct: 63407 gaggttccggtggtgggcggacgagctggcc 63377 Score = 44.1 bits (22), Expect = 0.37 Identities = 31/34 (91%) Strand = Plus / Minus Query: 158 cggcgagcatgaggggtgaggcggcggcggaggg 191 |||||||||||||||| | ||||| ||||||||| Sbjct: 63492 cggcgagcatgaggggagcggcgggggcggaggg 63459
>dbj|AK069504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E20, full insert sequence Length = 2785 Score = 46.1 bits (23), Expect = 0.092 Identities = 32/35 (91%) Strand = Plus / Plus Query: 139 ttctccatcaggggatacgcggcgagcatgagggg 173 ||||||||| ||| |||||||||||||||||||| Sbjct: 105 ttctccatccgggagtacgcggcgagcatgagggg 139
>gb|AC158383.3| Mus musculus BAC clone RP23-135O16 from chromosome 12, complete sequence Length = 196552 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Plus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 154723 tgctgctgcgtcggcggcggcag 154745
>gb|BC053503.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone IMAGE:6329841) Length = 2917 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 849 tgctgctgcgtcggcggcggcag 827
>gb|BC062095.1| Mus musculus SRY-box containing gene 11, mRNA (cDNA clone MGC:69636 IMAGE:5716171), complete cds Length = 2764 Score = 46.1 bits (23), Expect = 0.092 Identities = 23/23 (100%) Strand = Plus / Minus Query: 282 tgctgctgcgtcggcggcggcag 304 ||||||||||||||||||||||| Sbjct: 796 tgctgctgcgtcggcggcggcag 774
>ref|XM_550575.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2020 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggcag 304 ||||||||||||| |||||||||||| Sbjct: 65 tactgctgctgcggcggcggcggcag 40
>ref|XM_472307.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 909 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggc 302 |||||||||||||||||||||| Sbjct: 186 ctgctgctgcgtcggcggcggc 165
>ref|XM_958006.1| Neurospora crassa OR74A hypothetical protein (NCU06248.1) partial mRNA Length = 1452 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gctactgctgctgcgtcggcggcggc 302 ||||||||||||||| |||||||||| Sbjct: 904 gctactgctgctgcggcggcggcggc 929
>ref|XM_326102.1| Neurospora crassa OR74A hypothetical protein (NCU06248.1) partial mRNA Length = 1452 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gctactgctgctgcgtcggcggcggc 302 ||||||||||||||| |||||||||| Sbjct: 904 gctactgctgctgcggcggcggcggc 929
>gb|AC099304.6| Rattus norvegicus 2 BAC CH230-149H21 (Children's Hospital Oakland Research Institute) complete sequence Length = 220543 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 277 gctactgctgctgcgtcggcggcggc 302 ||||||||||||||| |||||||||| Sbjct: 42254 gctactgctgctgcggcggcggcggc 42279
>emb|AL731600.3|OSJN00243 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0055C08, complete sequence Length = 145670 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggc 302 |||||||||||||||||||||| Sbjct: 121961 ctgctgctgcgtcggcggcggc 121940
>gb|AF233430.1|AF233430 Chlamydomonas reinhardtii EYE2 (EYE2) gene, complete cds Length = 3948 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtg 306 ||||||||||| |||||||||||||| Sbjct: 3101 ctgctgctgcggcggcggcggcagtg 3126
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggc 302 |||||||||||||||||||||| Sbjct: 19340129 ctgctgctgcgtcggcggcggc 19340108 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggc 308 ||||||||||| |||||||||| ||||| Sbjct: 5077806 ctgctgctgcggcggcggcggcggtggc 5077833
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tcgcatccatggccgccgccgc 137 |||||||||||||||||||||| Sbjct: 24791580 tcgcatccatggccgccgccgc 24791601 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 19866738 ctgctgctgcggcggcggcggcggtggcg 19866710 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 21416018 ctgctgctgcggcggcggcggctgtagcgccg 21416049 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 19867091 tactgctgctgcggcggcggcggc 19867068
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 279 tactgctgctgcgtcggcggcggcag 304 ||||||||||||| |||||||||||| Sbjct: 1444102 tactgctgctgcggcggcggcggcag 1444127 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 catggctactgctgctgcgtcggcg 297 |||||||||||||||||| |||||| Sbjct: 6967874 catggctactgctgctgcatcggcg 6967850 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 gcgtcggcggcggcagtggcgccgtccc 316 |||||||||||||| |||||| |||||| Sbjct: 28787828 gcgtcggcggcggcggtggcgtcgtccc 28787855
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 279 tactgctgctgcgtcggcggcggcag 304 ||||||||||||| |||||||||||| Sbjct: 51388 tactgctgctgcggcggcggcggcag 51413
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 279 tactgctgctgcgtcggcggcggcag 304 ||||||||||||| |||||||||||| Sbjct: 152641 tactgctgctgcggcggcggcggcag 152666
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tcgcatccatggccgccgccgc 137 |||||||||||||||||||||| Sbjct: 26031 tcgcatccatggccgccgccgc 26052
>dbj|AK122004.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033110L01, full insert sequence Length = 2020 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggcag 304 ||||||||||||| |||||||||||| Sbjct: 65 tactgctgctgcggcggcggcggcag 40
>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full insert sequence Length = 1369 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Plus Query: 116 tcgcatccatggccgccgccgc 137 |||||||||||||||||||||| Sbjct: 53 tcgcatccatggccgccgccgc 74
>gb|AY147013.1| Leishmania major DNA polymerase I type A (POLIA) mRNA, complete cds; nuclear gene for mitochondrial product Length = 2796 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 276 ggctactgctgctgcgtcggcggcggcagt 305 |||| ||||||||||| ||||||||||||| Sbjct: 1029 ggctgctgctgctgcggcggcggcggcagt 1000
>ref|XM_478419.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1156 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 86 ctgctgctgcggcggcggcggcggtggcg 58 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 228 tactgctgctgcggcggcggcggc 205
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 14821 ctgctgctgcggcggcggcggcggtggcg 14849
>gb|BT015197.1| Drosophila melanogaster RE71183 full insert cDNA Length = 3899 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcgg 301 ||||||||||||||||||||| Sbjct: 2484 ctgctgctgcgtcggcggcgg 2504
>tpg|BK005052.1| TPA: TPA_inf: Oryza sativa (indica cultivar-group) WRKY transcription factor 49 (WRKY49) gene, complete cds Length = 2920 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 290 ctgctgctgcggcggcggcggcggtggcg 318
>ref|NM_140370.1| Drosophila melanogaster SRm160 CG11274-RA (SRm160), mRNA Length = 3292 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcgg 301 ||||||||||||||||||||| Sbjct: 2484 ctgctgctgcgtcggcggcgg 2504
>gb|AC093546.2| Drosophila melanogaster 3L BAC RP98-8G7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 207761 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcgg 301 ||||||||||||||||||||| Sbjct: 137793 ctgctgctgcgtcggcggcgg 137813
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 ccatggccgccgccgcgttct 142 ||||||||||||||||||||| Sbjct: 620426 ccatggccgccgccgcgttct 620446
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 agcatgaggggtgaggcggcggcgg 187 ||||||||| ||||||||||||||| Sbjct: 8430961 agcatgaggcgtgaggcggcggcgg 8430937 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cggcggcagtggcgccgtccccga 319 |||||||||||||| ||||||||| Sbjct: 12516582 cggcggcagtggcggcgtccccga 12516559
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 27934656 ctgctgctgcggcggcggcggcggtggcg 27934684 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tacgcggcgagcatgagggg 173 |||||||||||||||||||| Sbjct: 6394323 tacgcggcgagcatgagggg 6394304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gggtgaggcggcggcggagg 190 |||||||||||||||||||| Sbjct: 760064 gggtgaggcggcggcggagg 760045
>dbj|AP004785.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0061B07 Length = 124766 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 273 catggctactgctgctgcgtcggcg 297 |||||||||||||||||| |||||| Sbjct: 27301 catggctactgctgctgcatcggcg 27277
>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0036M16 Length = 158880 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 31388 ctgctgctgcggcggcggcggcggtggcg 31360 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 31741 tactgctgctgcggcggcggcggc 31718
>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0650C03 Length = 144337 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 106897 ctgctgctgcggcggcggcggcggtggcg 106869 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 107250 tactgctgctgcggcggcggcggc 107227
>dbj|AK062798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C10, full insert sequence Length = 1157 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcg 309 ||||||||||| |||||||||| |||||| Sbjct: 86 ctgctgctgcggcggcggcggcggtggcg 58 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 229 tactgctgctgcggcggcggcggc 206
>gb|AE003539.3| Drosophila melanogaster chromosome 3L, section 46 of 83 of the complete sequence Length = 272016 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcgg 301 ||||||||||||||||||||| Sbjct: 165727 ctgctgctgcgtcggcggcgg 165747
>dbj|D37945.1|WHTPH2B15D Triticum aestivum gene for protein H2B153, complete cds Length = 3209 Score = 42.1 bits (21), Expect = 1.4 Identities = 30/33 (90%) Strand = Plus / Minus Query: 270 cgccatggctactgctgctgcgtcggcggcggc 302 |||||||| |||||||||||| |||||||||| Sbjct: 1303 cgccatggatactgctgctgctgcggcggcggc 1271
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 agcatgaggggtgaggcggcggcgg 187 ||||||||| ||||||||||||||| Sbjct: 8430844 agcatgaggcgtgaggcggcggcgg 8430820 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cggcggcagtggcgccgtccccga 319 |||||||||||||| ||||||||| Sbjct: 12470952 cggcggcagtggcggcgtccccga 12470929
>emb|AL928775.2|CNS08CC5 Oryza sativa chromosome 12, . BAC OSJNBa0030N06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 146444 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 163 agcatgaggggtgaggcggcggcgg 187 ||||||||| ||||||||||||||| Sbjct: 37624 agcatgaggcgtgaggcggcggcgg 37600
>ref|NM_188553.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3228 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 cggagggggcacgccgacgtcgca 120 |||||||| ||||||||||||||| Sbjct: 1082 cggaggggccacgccgacgtcgca 1105
>ref|XM_474637.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1674 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggc 308 ||||||||||| |||||||||| ||||| Sbjct: 541 ctgctgctgcggcggcggcggcggtggc 514
>ref|XM_478418.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1302 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 279 tactgctgctgcgtcggcggcggc 302 ||||||||||||| |||||||||| Sbjct: 128 tactgctgctgcggcggcggcggc 105
>ref|XM_478610.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1116 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 261 ctgctgctgcggcggcggcggctgtagcgccg 230
>ref|XM_475089.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1647 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 gggtgaggcggcggcggagg 190 |||||||||||||||||||| Sbjct: 303 gggtgaggcggcggcggagg 322
>gb|AC148822.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0036K13 map near R3342S, complete sequence Length = 135684 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 ggccgccgccgcgttctccatcag 149 ||||||||||||||||||| |||| Sbjct: 57934 ggccgccgccgcgttctccgtcag 57957
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggcggcggcagtggcgccg 312 |||||||||||||||||||| Sbjct: 142398 cggcggcggcagtggcgccg 142379
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gggtgaggcggcggcggagg 190 |||||||||||||||||||| Sbjct: 32506 gggtgaggcggcggcggagg 32487
>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0015G13, complete sequence Length = 143966 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tacgcggcgagcatgagggg 173 |||||||||||||||||||| Sbjct: 96062 tacgcggcgagcatgagggg 96043
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggcggcggcagtggcgccg 312 |||||||||||||||||||| Sbjct: 3028063 cggcggcggcagtggcgccg 3028044
>gb|AE009086.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 112 of 256 of the complete sequence Length = 10140 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 cgtgtcccccgccggtgatagcgg 419 ||||||||| |||||||||||||| Sbjct: 3920 cgtgtccccggccggtgatagcgg 3943
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 cgccgtccccgaggaggtcg 327 |||||||||||||||||||| Sbjct: 31461 cgccgtccccgaggaggtcg 31442
>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence Length = 144144 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggc 308 ||||||||||| |||||||||| ||||| Sbjct: 54079 ctgctgctgcggcggcggcggcggtggc 54106
>dbj|AB110196.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 23C4AG047 Length = 1040 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 185 ctgctgctgcggcggcggcggctgtagcgccg 154
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 396 cgtgtcccccgccggtgatagcgg 419 ||||||||| |||||||||||||| Sbjct: 1229574 cgtgtccccggccggtgatagcgg 1229597
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 ggccgccgccgcgttctcca 145 |||||||||||||||||||| Sbjct: 2620263 ggccgccgccgcgttctcca 2620244
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggcggcggcagtggcgccg 312 |||||||||||||||||||| Sbjct: 28183835 cggcggcggcagtggcgccg 28183816 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 ggccgccgccgcgttctccatcag 149 ||||||||||||||||||| |||| Sbjct: 27521807 ggccgccgccgcgttctccgtcag 27521830
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcg 300 |||||||||||||||||||| Sbjct: 18867908 ctgctgctgcgtcggcggcg 18867927 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gctgcgtcggcggcggcagtggcg 309 ||||||||||||||||| |||||| Sbjct: 18166396 gctgcgtcggcggcggcggtggcg 18166419
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1619_F12 Length = 133028 Score = 40.1 bits (20), Expect = 5.7 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 97 cggagggggc-acgccgacgtcgcatcc 123 |||||||||| ||||||||||||||||| Sbjct: 39213 cggagggggccacgccgacgtcgcatcc 39186
>gb|AF263457.1|AF263457 Zea mays SCARECROW (SCR) gene, complete cds Length = 3100 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 |||| |||||| ||||||||||||||| |||| Sbjct: 618 ctgcggctgcggcggcggcggcagtggggccg 587
>ref|XM_341009.2| PREDICTED: Rattus norvegicus T-box 1 (predicted) (Tbx1_predicted), mRNA Length = 1783 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 275 tggctactgctgctgcgtcggcggcggc 302 ||||| ||||||||||| |||||||||| Sbjct: 1444 tggctgctgctgctgcggcggcggcggc 1417
>ref|XM_216340.3| PREDICTED: Rattus norvegicus AT rich interactive domain 1A (Swi1 like) (predicted) (Arid1a_predicted), mRNA Length = 8527 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcag 304 ||||||||||| |||||||||||| Sbjct: 1373 ctgctgctgcggcggcggcggcag 1396
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cggagggggcacgccgacgtcgca 120 |||||||| ||||||||||||||| Sbjct: 103652 cggaggggccacgccgacgtcgca 103629
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 97 cggagggggcacgccgacgtcgca 120 |||||||| ||||||||||||||| Sbjct: 57746 cggaggggccacgccgacgtcgca 57723
>dbj|AP005445.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0028E05 Length = 157631 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 gcgtcggcggcggcagtggcgccgtccc 316 |||||||||||||| |||||| |||||| Sbjct: 95603 gcgtcggcggcggcggtggcgtcgtccc 95630
>dbj|AP005759.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556A05 Length = 158189 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 286 gctgcgtcggcggcggcagtggcg 309 ||||||||||||||||| |||||| Sbjct: 15120 gctgcgtcggcggcggcggtggcg 15143
>dbj|AP005156.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1729_E01 Length = 155527 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 60074 ctgctgctgcggcggcggcggctgtagcgccg 60105
>dbj|AK073003.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150K23, full insert sequence Length = 2335 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 286 gctgcgtcggcggcggcagtggcg 309 ||||||||||||||||| |||||| Sbjct: 79 gctgcgtcggcggcggcggtggcg 56
>dbj|AK068361.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146F13, full insert sequence Length = 2597 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 262 ctgctgctgcggcggcggcggctgtagcgccg 231
>dbj|AK068287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013149F18, full insert sequence Length = 815 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 296 cggcggcagtggcgccgtccccga 319 |||||||||||||| ||||||||| Sbjct: 572 cggcggcagtggcggcgtccccga 595
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cgtcggcggcggcagtggcg 309 |||||||||||||||||||| Sbjct: 4805118 cgtcggcggcggcagtggcg 4805137 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 289 gcgtcggcggcggcagtggc 308 |||||||||||||||||||| Sbjct: 2615175 gcgtcggcggcggcagtggc 2615194
>dbj|AK058889.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-D03, full insert sequence Length = 1116 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 281 ctgctgctgcgtcggcggcggcagtggcgccg 312 ||||||||||| |||||||||| || |||||| Sbjct: 261 ctgctgctgcggcggcggcggctgtagcgccg 230
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 cggcggcggcagtggcgccg 312 |||||||||||||||||||| Sbjct: 28168713 cggcggcggcagtggcgccg 28168694 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 ggccgccgccgcgttctccatcag 149 ||||||||||||||||||| |||| Sbjct: 27545795 ggccgccgccgcgttctccgtcag 27545818
>emb|AL732534.4|CNS08C99 Oryza sativa chromosome 12, . BAC OSJNBb0061N09 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 92799 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cggcggcagtggcgccgtccccga 319 |||||||||||||| ||||||||| Sbjct: 13344 cggcggcagtggcggcgtccccga 13321
>emb|AL954826.3|CNS08CD2 Oryza sativa chromosome 12, . BAC OSJNBb0080P14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132241 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 296 cggcggcagtggcgccgtccccga 319 |||||||||||||| ||||||||| Sbjct: 118060 cggcggcagtggcggcgtccccga 118037
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 cgcatccatggccgccgccg 136 |||||||||||||||||||| Sbjct: 882458 cgcatccatggccgccgccg 882439
>gb|U32943.1|SAU32943 Schistocerca americana Antennapedia homeotic protein (Antp) mRNA, complete cds Length = 3068 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 283 gctgctgcgtcggcggcggc 302 |||||||||||||||||||| Sbjct: 810 gctgctgcgtcggcggcggc 791
>gb|U19872.1|CFU19872 Canis familiaris dihydrolipoamide: NAD+ oxidoreductase mRNA, complete cds Length = 2288 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 172 ggtgaggcggcggcggaggg 191 |||||||||||||||||||| Sbjct: 13 ggtgaggcggcggcggaggg 32
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 gggtgaggcggcggcggagg 190 |||||||||||||||||||| Sbjct: 105245 gggtgaggcggcggcggagg 105226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,864,879 Number of Sequences: 3902068 Number of extensions: 2864879 Number of successful extensions: 76105 Number of sequences better than 10.0: 86 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 73529 Number of HSP's gapped (non-prelim): 2578 length of query: 425 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 403 effective length of database: 17,147,199,772 effective search space: 6910321508116 effective search space used: 6910321508116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
