>POLG_HCVJP (Q9DHD6) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 20/50 (40%), Positives = 26/50 (52%)
 Frame = +1

Query: 121  ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPME 270
            +  PS  TAASD GS++ M   PLE +  D ++     E   A SA P E
Sbjct: 2373 VQQPSGETAASDAGSLSSM--PPLEGEPGDPDL-----EFEPARSAPPSE 2415

>YH57_SCHPO (O94312) PWWP domain protein C215.07c|
          Length = 568

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 115 SQISNPSSATAAS-DDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPME 270
           + I+N +    AS D+GS +  TPSP  +Q  D++    +++   ADS  P +
Sbjct: 455 ASIANENETEIASLDEGSESKPTPSPPAEQLTDQKQNEDNEDKVKADSNGPTQ 507

>E75BA_DROME (P17672) Ecdysone-induced protein 75B isoform A (E75-B)|
          Length = 1355

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +1

Query: 142 TAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQP 264
           T  S+  S    T + + QQ++  ++++ HQ+ +AA + +P
Sbjct: 148 TTTSNSNSNNTQTTNSISQQQQQHQIVLQHQQPAAAATPKP 188

>POLG_HCVJ8 (P26661) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +1

Query: 121  ISNPSSATAASDDGSMTMMTPSPLEQQEEDEEMLVAHQELSAADSAQPME 270
            +  PS  TAAS+ GS++ M   PLE +  D ++     E     SA P E
Sbjct: 2373 VQQPSDETAASEAGSLSSM--PPLEGEPGDPDL-----EFEPVGSAPPSE 2415

>IF2_SYNP6 (Q5N0A5) Translation initiation factor IF-2|
          Length = 1030

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 190 LEQQEEDEEMLVAHQELSAADS 255
           L Q ++D+++L A QEL+AAD+
Sbjct: 362 LIQDDDDDDLLTAEQELAAADA 383

>CG034_HUMAN (Q96L11) Protein C7orf34 precursor (MSSP-binding protein CTM-1)|
          Length = 122

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 130 PSSATAASDDGSMTMMTPSPLEQQEEDEEMLVA 228
           P + +    DGS T  TPS  + QE+ EE  VA
Sbjct: 25  PLNGSPGPKDGSQTEKTPSADQNQEQFEEHFVA 57

>WDR75_XENLA (Q6DFC6) WD-repeat protein 75|
          Length = 832

 Score = 27.7 bits (60), Expect = 8.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 193 EQQEEDEEMLVAHQELSAADSAQPME 270
           E+ +EDEEM   H E  ++D  + ME
Sbjct: 768 EESKEDEEMKSEHSEADSSDETEEME 793


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.298    0.112    0.282 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,929,248
Number of Sequences: 219361
Number of extensions: 211157
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 80,573,946
effective HSP length: 66
effective length of database: 66,096,120
effective search space used: 1586306880
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.6 bits)