>TCOF_HUMAN (Q13428) Treacle protein (Treacher Collins syndrome protein)|
          Length = 1411

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 22/78 (28%), Positives = 36/78 (46%)
 Frame = +2

Query: 11  ASASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRSDLVQSSERARAPR 190
           A+++P +  PR  A+P  P  T      V   +AGKR+  S    +S   +S     AP 
Sbjct: 296 AASAPAKESPRKGAAPAPPGKTG---PAVAKAQAGKREEDS----QSSSEESDSEEEAPA 348

Query: 191 VSGCAGSVPRGRPSPSAA 244
            +  +G  P+ R + + A
Sbjct: 349 QAKPSGKAPQVRAASAPA 366

>ICP0_BHV1J (P29128) Trans-acting transcriptional protein ICP0 (P135 protein)|
           (IER 2.9/ER2.6)
          Length = 676

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = +1

Query: 82  AAAKSGPPAS---GQAQIPFQVFASIRLGPIERASTRAPR*RLCRIGSERTAVAVGGGST 252
           AAA S PP+S   G  + P ++ A+ R  P  +A   +P  R    G+    + V  G T
Sbjct: 377 AAAVSAPPSSRSRGGRRDP-RLPAAPRAAPAAQARACSPEPREEGRGA---GLGVAAGET 432

Query: 253 RGVSARSSAGCWDPRARRSS*GGPPPV 333
            G  A S  G  + RAR     GPP V
Sbjct: 433 AGWGAGSEEGRGERRARLLGEAGPPRV 459

>CSKI2_HUMAN (Q8WXE0) Caskin-2|
          Length = 1202

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
 Frame = -3

Query: 416 PPTPARSVTRPSRLAEARTGG*DETR---RSTGG--GPPHELLRARGSQHPALLLAETPR 252
           P  PARS ++ S  A +R  G  + +   + +GG   PP E     G++ P  L +  P 
Sbjct: 689 PLPPARSPSQESIGARSRGSGHSQEQPAPQPSGGDPSPPQERNLPEGTERPPKLCSSLPG 748

Query: 251 VDPPP 237
             PPP
Sbjct: 749 QGPPP 753

>PRDM6_HUMAN (Q9NQX0) PR domain zinc finger protein 6 (PR domain-containing|
           protein 6) (Fragment)
          Length = 608

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 18/92 (19%)
 Frame = +1

Query: 61  HTRQHSL----AAAKSGPPA--------------SGQAQIPFQVFASIRLGPIERASTRA 186
           HT  HSL    A  K   PA              SGQAQ P  V +  ++ P  RA    
Sbjct: 12  HTHTHSLTLFCAVVKPTCPAGKLPERGTKEPGRGSGQAQQPTAVESGAQVRPHSRALRGP 71

Query: 187 PR*RLCRIGSERTAVAVGGGSTRGVSARSSAG 282
           P    CR G  R A ++      G+S+R++ G
Sbjct: 72  PNFLACRSGGFRAAQSL------GLSSRAAQG 97

>K0586_HUMAN (Q9BVV6) Protein KIAA0586|
          Length = 1533

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
 Frame = -3

Query: 320  PPHELLRARGSQHPALLLAETPRVDP---PPTATAVLS 216
            P  E+   +G   PA++L  TP V P   PP A AV +
Sbjct: 1078 PVKEICAEKGDDMPAIMLVNTPTVTPTTTPPPAAAVFT 1115

>MDC1_PIG (Q767L8) Mediator of DNA damage checkpoint protein 1|
          Length = 2042

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -3

Query: 350 DETRRSTGGGPPHELLRARGSQHPALLLAETPRVDPPPTA-TAVLSE 213
           +ET R  GG  PH LL A  S+     L+E   V  P T+ T V+ E
Sbjct: 148 EETPRGQGGTQPHRLLLAEDSEEEVDSLSERCVVKGPKTSLTTVIPE 194

>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan|
           glucanohydrolase) (Isozyme 1B)
          Length = 348

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 29/91 (31%), Positives = 36/91 (39%), Gaps = 5/91 (5%)
 Frame = +1

Query: 151 RLGPIERASTRAPR*RLCRIGSERTAVAVGGGSTRGVSARSSAGC-WDPRARRSS*GGP- 324
           RLGP      R  R R  + G  R        ++ G S+  S G  W   + R +   P 
Sbjct: 135 RLGPAHDLPRRPLRRRHRKPGHRRRTSTTSTSASSGSSSAGSTGSRWTSASTRGASTSPR 194

Query: 325 --PPVDLLVSSQPPVRASA-RRLGRVTDRAG 408
             PP     +S PP RAS   R GR    AG
Sbjct: 195 ATPPTWQRSTSMPPSRASPWPRYGRRWRTAG 225

>ZYX_CHICK (Q04584) Zyxin|
          Length = 542

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
 Frame = -3

Query: 416 PPTPARSVTRPSRLAEARTGG*DETRRSTGGGPPHELLRARGS--QHPALLLAETPRVDP 243
           PP P++   +PS    ++  G D T        P +      S    P+L    T +  P
Sbjct: 169 PPFPSKFTPKPSGTLSSKPPGLDSTPAPAPWAAPQQRKEPLASVPPPPSLPSQPTAKFTP 228

Query: 242 PPTATAVLSEP 210
           PP A++  S+P
Sbjct: 229 PPVASSPGSKP 239

>TFTE_BURCE (Q45072) Maleylacetate reductase (EC 1.3.1.32)|
          Length = 352

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
 Frame = +1

Query: 82  AAAKSGPPASGQAQIPFQVFASIRLGPIERASTRAP-------R*RLCRIGSERTAVAVG 240
           A   S P  S  A+    +  S  +G   RA+   P       R    R+G++  AVA+G
Sbjct: 35  ALVLSTPEQSADAERVAGILGSRAVGVFPRATMHVPIELAREARLEASRLGAD-CAVAIG 93

Query: 241 GGSTRGV 261
           GGST G+
Sbjct: 94  GGSTTGL 100

>GIDA_METCA (Q60CS5) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gidA (Glucose-inhibited division protein A)
          Length = 625

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 188 GARVLARSIGPSLIEAKTWNGICACPL 108
           GAR+ AR I P   +A++WN +   PL
Sbjct: 477 GARLAARRIRPDSSQAESWNALTEIPL 503

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 30/85 (35%), Positives = 35/85 (41%), Gaps = 1/85 (1%)
 Frame = -3

Query: 416  PPTPARSVTRPSRLAEARTGG*DETRRSTGGGPPHELLRARGSQH-PALLLAETPRVDPP 240
            PP PA +        EAR G   E+ R    GP  +  R    Q  PA   A  PR    
Sbjct: 2616 PPGPAVTAR------EARPGVPAESTRPAPVGPRDDFRRLPSPQSSPAPPDATAPRPPAS 2669

Query: 239  PTATAVLSEPIRHSR*RGARVLARS 165
              A+A  S   R  R R AR LAR+
Sbjct: 2670 SRASAASSSGSRARRHRRARSLARA 2694

>RSP1_CAEEL (Q23121) Probable splicing factor, arginine/serine-rich 1|
           (RNA-binding protein srp-5) (CeSRp75)
          Length = 312

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 14  SASPPRHLPRSRASPTTPANTA*QQQKVGLQRAGKRKFHSRFSLRS-DLVQSSERARAPR 190
           S S  R   RSR+  ++ + +  +      +R  K K  SR   RS D  +S   +R+P+
Sbjct: 216 SRSRSRDRRRSRSRSSSRSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPK 275

Query: 191 VSGCAGSVPRGRPSPS--AADRRAES 262
               + S PRG  SPS   + RR+ S
Sbjct: 276 KVDRSPSPPRGSRSPSEKGSPRRSRS 301

>TF3B_MOUSE (Q8CFK2) Transcription factor IIIB 90 kDa subunit (TFIIIB90)|
           (hTFIIIB90) (B-related factor 1) (BRF-1)
          Length = 676

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 295 RARRSS*GGPPPVDLLVSSQPPVRASARRLGR 390
           R   S  GG PP D    SQPP RAS ++L R
Sbjct: 543 RDLNSKGGGSPPRD---DSQPPERASTKKLSR 571

>TRI26_RAT (P62603) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 542

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18
           C   + G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 356 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 390

>TRI26_MOUSE (Q99PN3) Tripartite motif protein 26 (Zinc finger protein 173)|
          Length = 545

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGK 18
           C   + G   F   K+ W V  E+ G  ED+EEG+
Sbjct: 359 CEPGVLGSKGFTWGKVYWEVELEREGWSEDEEEGE 393

>MGR5_RAT (P31424) Metabotropic glutamate receptor 5 precursor (mGluR5)|
          Length = 1203

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +1

Query: 232  AVGGGSTRGVSARSSAGCWDPRARRSS*GGPPPVD 336
            A GGGS  GV+   +AGC       ++ GGP P D
Sbjct: 963  AAGGGSGPGVAGAGNAGC-------TATGGPEPPD 990

>ECR_HELVI (O18473) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
           (HvEcR)
          Length = 576

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = -3

Query: 248 DPPPTATAVLSEPIRHSR*RGARVLARSIGPSLIEAKTWNGICACPLAGGPLFAAAK-LC 72
           DPPP   A + E ++H       V+ R +   L+E      +        PL A  K L 
Sbjct: 273 DPPPPEAARILECVQH------EVVPRFLNEKLMEQNRLKNV-------PPLTANQKSLI 319

Query: 71  WRVWWEKRGCEEDDEEGKRRL 9
            R+ W + G E+  EE  +R+
Sbjct: 320 ARLVWYQEGYEQPSEEDLKRV 340

>IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)|
           (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK)
          Length = 710

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 20/49 (40%), Positives = 24/49 (48%)
 Frame = +1

Query: 214 SERTAVAVGGGSTRGVSARSSAGCWDPRARRSS*GGPPPVDLLVSSQPP 360
           S R A    GG+TR  S RSS G + P       G P     L+SS+PP
Sbjct: 611 SFREASCTQGGTTRESSVRSSPG-FQPTTME---GSPTGSSSLLSSEPP 655

>UBQL4_HUMAN (Q9NRR5) Ubiquilin-4 (Ataxin-1 ubiquitin-like-interacting protein|
           A1U)
          Length = 601

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -3

Query: 416 PPTPARSVTRPSRLAEARTGG*DETRRSTGGGP 318
           P TPA+  T  S  ++A +G    +RRS+GGGP
Sbjct: 115 PATPAQPSTSGSASSDAGSG----SRRSSGGGP 143

>RP1L1_MOUSE (Q8CGM2) Retinitis pigmentosa 1-like 1 protein (Retinitis|
           pigmentosa 1-like protein 1)
          Length = 1859

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
 Frame = +1

Query: 241 GGSTR---GVSARSSAGCWDPRARRS 309
           G  TR    V+ARS  GCW P A++S
Sbjct: 243 GNRTRKLSSVTARSERGCWGPNAKQS 268

>DAM1_YARLI (Q6C2T8) DASH complex subunit DAM1 (Outer kinetochore protein DAM1)|
          Length = 223

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = +1

Query: 100 PPASGQAQIPFQVFASIRLGPIERA-STRAPR*RLCRIGSERTAVAVGGGSTRGVSARSS 276
           PP+S Q+Q+P ++  S R   I    S R PR R   +      V  G GS  GV   S 
Sbjct: 152 PPSSYQSQLPSRIPQSSRASRIRPPNSLRPPRGRGLYLRGGSRGVTGGRGSYTGVGRGSG 211

Query: 277 AGCWDPRARR 306
               +   RR
Sbjct: 212 RPASEGTTRR 221

>SYT9_RAT (Q925C0) Synaptotagmin-9 (Synaptotagmin IX) (SytIX) (Synaptotagmin|
           V) (Synaptotagmin 5)
          Length = 491

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGKRRLNF 3
           C   L G  LF + KLCW  W E+       +  +  LN+
Sbjct: 62  CGLALFGVSLFVSWKLCWVPWRERGLFSGSKDNNQEPLNY 101

>SYT9_MOUSE (Q9R0N9) Synaptotagmin-9 (Synaptotagmin IX) (SytIX) (Synaptotagmin|
           V)
          Length = 491

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGKRRLNF 3
           C   L G  LF + KLCW  W E+       +  +  LN+
Sbjct: 62  CGLALFGVSLFVSWKLCWVPWRERGLFSGSKDNNQEPLNY 101

>SYT9_HUMAN (Q86SS6) Synaptotagmin-9 (Synaptotagmin IX) (SytIX)|
          Length = 491

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 122 CACPLAGGPLFAAAKLCWRVWWEKRGCEEDDEEGKRR-LNF 3
           C   L G  LF + KLCW V W +RG     ++  +  LN+
Sbjct: 62  CGLALFGVSLFVSWKLCW-VPWRERGLPSGSKDNNQEPLNY 101


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,210,081
Number of Sequences: 219361
Number of extensions: 1084584
Number of successful extensions: 4081
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4078
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)