ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45h05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblast... 30 2.3

>ROBO3_MOUSE (Q9Z2I4) Roundabout homolog 3 precursor (Retinoblastoma-inhibiting|
            gene 1) (Rig-1)
          Length = 1366

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +1

Query: 139  PYAVDPRRGRRDADL----LPPPKIDRAVFNESAGSRKQTFSRRRA 264
            P A+  RR     DL    LPPP++   +   SAGSR+  F R RA
Sbjct: 1253 PKALPYRREHSPGDLPPPPLPPPELRDKLALGSAGSRQHVFPRARA 1298


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.133    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,500,733
Number of Sequences: 219361
Number of extensions: 265296
Number of successful extensions: 1137
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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