ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45h03 |
|---|---|
| Clone Library Name | barley_pub |
>OXRP_RAT (Q63617) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 47.4 bits (111), Expect = 1e-05 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = +3 Query: 210 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHP 386 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNP 93
>OXRP_CRIGR (Q60432) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) (170 kDa glucose-regulated protein) Length = 999 Score = 47.4 bits (111), Expect = 1e-05 Identities = 24/59 (40%), Positives = 37/59 (62%) Frame = +3 Query: 210 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHP 386 +DLGSE +KVA V PG P+ + +N+ S+RK+P L + R G+ AAG+ ++P Sbjct: 38 VDLGSESMKVAIVK--PG-VPMEIVLNKESRRKTPVTVTLKENERFLGDSAAGMAIKNP 93
>OXRP_HUMAN (Q9Y4L1) 150 kDa oxygen-regulated protein precursor (Orp150)| (Hypoxia up-regulated 1) Length = 999 Score = 45.8 bits (107), Expect = 4e-05 Identities = 23/59 (38%), Positives = 37/59 (62%) Frame = +3 Query: 210 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHP 386 +DLGSE +KVA V PG P+ + +N+ S+RK+P + L + R G+ AA + ++P Sbjct: 38 VDLGSESMKVAIV--KPG-VPMEIVLNKESRRKTPVIVTLKENERFFGDSAASMAIKNP 93
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 35.4 bits (80), Expect = 0.054 Identities = 17/34 (50%), Positives = 19/34 (55%), Gaps = 7/34 (20%) Frame = +2 Query: 14 PPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94 PPRR RSP PPR P R+P PR +PP Sbjct: 585 PPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSPP 618
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 35.0 bits (79), Expect = 0.070 Identities = 17/33 (51%), Positives = 19/33 (57%), Gaps = 6/33 (18%) Frame = +2 Query: 14 PPRRDRSPVLP------PRPHSRAPDPRTLTPP 94 PPRR RSP LP P P R+P PR +PP Sbjct: 560 PPRRRRSPSLPRRRSPSPPPRRRSPSPRRYSPP 592
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 35.0 bits (79), Expect = 0.070 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%) Frame = +2 Query: 8 ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94 A PPRR R+P PPR P R+P PR +PP Sbjct: 578 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 613
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 35.0 bits (79), Expect = 0.070 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 7/36 (19%) Frame = +2 Query: 8 ARPPRRDRSPVLPPR-------PHSRAPDPRTLTPP 94 A PPRR R+P PPR P R+P PR +PP Sbjct: 564 APPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPP 599
>HORN_HUMAN (Q86YZ3) Hornerin| Length = 2850 Score = 32.0 bits (71), Expect = 0.59 Identities = 17/53 (32%), Positives = 25/53 (47%) Frame = -2 Query: 401 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 243 G G+ +RG+ R +G + + GQ G +LGH G G R + HG Sbjct: 261 GSRSGQSSRGERHRSSSGSSSSYGQHGSGSRQSLGHGRQGSGSRQSPSHVRHG 313
>ROBO1_RAT (O55005) Roundabout homolog 1 precursor| Length = 1651 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 5 LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97 + PP R R PV PP P PR ++PPH Sbjct: 1285 MPHPPDRRRQPVSPP------PPPRPISPPH 1309
>ROBO1_MOUSE (O89026) Roundabout homolog 1 precursor| Length = 1612 Score = 31.2 bits (69), Expect = 1.0 Identities = 14/31 (45%), Positives = 17/31 (54%) Frame = +2 Query: 5 LARPPRRDRSPVLPPRPHSRAPDPRTLTPPH 97 + PP R R PV PP P PR ++PPH Sbjct: 1246 MPHPPDRRRQPVSPP------PPPRPISPPH 1270
>LATS1_HUMAN (O95835) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) (h-warts) Length = 1130 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDPRTLTPP 94 PP + RS PP P + P PR TPP Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264
>LATS1_MOUSE (Q8BYR2) Serine/threonine-protein kinase LATS1 (EC 2.7.11.1) (Large| tumor suppressor homolog 1) (WARTS protein kinase) Length = 1129 Score = 30.8 bits (68), Expect = 1.3 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDPRTLTPP 94 PP + RS PP P + P PR TPP Sbjct: 238 PPPQVRSVTPPPPPRGQTPPPRGTTPP 264
>XYLS_SULSO (Q9P999) Alpha-xylosidase (EC 3.2.1.-)| Length = 731 Score = 30.8 bits (68), Expect = 1.3 Identities = 17/37 (45%), Positives = 20/37 (54%) Frame = -2 Query: 152 EQETRRHAGERASGLVGWHAGGSGFGDLELASVDGAG 42 EQE GER GL G HAGG+G G +D +G Sbjct: 103 EQEFELSEGERVYGL-GQHAGGNGLGQSSAYKLDYSG 138
>Y4BJ_RHISN (P55377) Hypothetical 67.9 kDa protein y4bJ| Length = 630 Score = 30.4 bits (67), Expect = 1.7 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 89 GSGFGDLELASVDGAGARENDLDGEG 12 G+G+ +E A++DG G R D+DG+G Sbjct: 226 GNGWTSIEGATLDGGGYRLQDIDGDG 251
>HSP7F_SCHPO (O59838) Heat shock protein homolog pss1| Length = 720 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/56 (35%), Positives = 30/56 (53%) Frame = +3 Query: 210 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITA 377 ID G+ +A +A RA I V +NE+S R +P+L + + +R GE A A Sbjct: 10 IDFGNSKTVIA---VARNRA-IDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEA 61
>MUCDL_MOUSE (Q8VHF2) Mucin and cadherin-like protein precursor| (Mu-protocadherin) Length = 831 Score = 30.0 bits (66), Expect = 2.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 17 PRRDRSPVLPPRPHSRAPDPRTLTPPHAIPLA 112 P+ + P+ PP P S +P P + TPP P A Sbjct: 710 PKLAQPPLRPPSPMSSSPTPPSSTPPSPQPKA 741
>ATPL_AQUAE (O66564) ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein)| Length = 100 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/63 (34%), Positives = 29/63 (46%) Frame = -2 Query: 413 VAHAGEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHGRDL 234 +A A E VA+G L G +A+G G G+ +GH V G G AR G L Sbjct: 16 IAMAAEGEASVAKG---LLYLGAGLAIGLAGLGAGVGMGHAVRGT-QEGVARNPNAGGRL 71 Query: 233 EPL 225 + L Sbjct: 72 QTL 74
>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)| (Fragment) Length = 198 Score = 29.3 bits (64), Expect = 3.8 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +2 Query: 8 ARPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 106 A PP R P P R PDP + PPHA P Sbjct: 17 ATPPTHAR-----PDPTRRHPDPESRAPPHARP 44
>HNRPU_HUMAN (Q00839) Heterogenous nuclear ribonucleoprotein U (hnRNP U)| (Scaffold attachment factor A) (SAF-A) (p120) (pp120) Length = 824 Score = 28.9 bits (63), Expect = 5.0 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -2 Query: 401 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREVHG 243 GE+ G D+G + EA + + G+ G G GD + GA HG Sbjct: 107 GEENGAAGAADSGPMEEEEAASEDENGDDQGFQEGEDELGDEEEGAGDENGHG 159
>TOP2_TRYBB (P12531) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)| Length = 1221 Score = 28.9 bits (63), Expect = 5.0 Identities = 18/42 (42%), Positives = 19/42 (45%) Frame = -2 Query: 374 GDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAARREV 249 GD G AG A AVG RGE+ G G G RR V Sbjct: 1172 GDGGATAAGAAAAVGGRGEK---------KGPGRAGGVRRMV 1204
>GRP78_PLAFO (Q05866) 78 kDa glucose-regulated protein homolog precursor (GRP| 78) Length = 655 Score = 28.5 bits (62), Expect = 6.6 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = +3 Query: 210 IDLGSEWLKVAAVHLAPGRAPIAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPA 389 IDLG+ + V GR + + NE+ R +P+ + DG R GE A HP Sbjct: 33 IDLGTTYSCVGV--FKNGR--VEILNNELGNRITPSYVSFVDGERKVGEAAKLEATVHPT 88 Query: 390 K 392 + Sbjct: 89 Q 89
>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22| Length = 831 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 1/24 (4%) Frame = +2 Query: 23 RDRSPVL-PPRPHSRAPDPRTLTP 91 R RSP L PPRP SR+ R+LTP Sbjct: 12 RPRSPSLSPPRPDSRSSRGRSLTP 35
>BL1S3_HUMAN (Q6QNY0) Biogenesis of lysosome-related organelles complex-1| subunit 3 (BLOC subunit 3) Length = 202 Score = 28.5 bits (62), Expect = 6.6 Identities = 15/41 (36%), Positives = 26/41 (63%) Frame = +3 Query: 273 IAVAINEMSKRKSPALAALADGNRLAGEEAAGITARHPAKV 395 +A A++ + +R +AALA +RLA +AAG+ A H ++ Sbjct: 124 VAAAVSGVYRRAGRDVAALA--SRLAAAQAAGLAAAHSVRL 162
>RECX_XANCI (P0A0W7) Regulatory protein recX| Length = 162 Score = 28.5 bits (62), Expect = 6.6 Identities = 29/101 (28%), Positives = 41/101 (40%) Frame = -2 Query: 305 ALGHLVDGDGDRGAARREVHGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 126 ALG LV + R R++ R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 125 ERASGLVGWHAGGSGFGDLELASVDGAGARENDLDGEGVRA 3 V + GSG+G L + + G + LD E + A Sbjct: 73 ------VVRNRAGSGYGPLHIRAELGT----HGLDSEAISA 103
>RECX_XANAC (P0A0W6) Regulatory protein recX| Length = 162 Score = 28.5 bits (62), Expect = 6.6 Identities = 29/101 (28%), Positives = 41/101 (40%) Frame = -2 Query: 305 ALGHLVDGDGDRGAARREVHGRDLEPLGAQVDXXXXXXXXXXXXXXRDEGEEQETRRHAG 126 ALG LV + R R++ R +EP AQ DEG + +TR A Sbjct: 23 ALGLLVRREHSRKELNRKLLARGIEPDAAQ----------AAVDRLTDEGWQDDTRFAAA 72 Query: 125 ERASGLVGWHAGGSGFGDLELASVDGAGARENDLDGEGVRA 3 V + GSG+G L + + G + LD E + A Sbjct: 73 ------VVRNRAGSGYGPLHIRAELGT----HGLDSEAISA 103
>TCRG1_HUMAN (O14776) Transcription elongation regulator 1 (TATA box-binding| protein-associated factor 2S) (Transcription factor CA150) Length = 1098 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/32 (37%), Positives = 15/32 (46%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109 PP R P +PP S P P + PP P+ Sbjct: 91 PPHLQRPPFMPPPMSSMPPPPGMMFPPGMPPV 122
>HSP7F_SACCA (Q875V0) Heat shock protein homolog SSE1| Length = 685 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 273 IAVAINEMSKRKSPALAALADGNRLAGE 356 I + +NE+S R +P+L NR GE Sbjct: 24 IDIVVNEVSNRSTPSLVGFGQKNRFLGE 51
>HSP7F_ASHGO (Q74ZJ0) Heat shock protein homolog SSE1| Length = 697 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = +3 Query: 273 IAVAINEMSKRKSPALAALADGNRLAGE 356 I + +NE+S R +P+L NR GE Sbjct: 24 IDIVVNEVSNRSTPSLVGFGQKNRFLGE 51
>ENV2_MOUSE (P11370) Retrovirus-related Env polyprotein from Fv-4 locus| Length = 679 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/33 (45%), Positives = 16/33 (48%) Frame = +2 Query: 11 RPPRRDRSPVLPPRPHSRAPDPRTLTPPHAIPL 109 RPP R P PP P + P LTPP PL Sbjct: 278 RPPSRP-VPARPPPPSNSTPTGDPLTPPTGDPL 309
>ZDHC8_MOUSE (Q5Y5T5) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 762 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = +2 Query: 11 RPPRRDRSPVLPPRPHSRAP 70 RPP R SPVL PRP +P Sbjct: 516 RPPPRSFSPVLGPRPREPSP 535
>RAPH1_HUMAN (Q70E73) Ras-associated and pleckstrin homology domains-containing| protein 1 (RAPH1) (Lamellipodin) (Proline-rich EVH1 ligand 2) (PREL-2) (Protein RMO1) (Amyotrophic lateral sclerosis 2 chromosomal region candidate 9 gene protein) Length = 1302 Score = 28.1 bits (61), Expect = 8.6 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDPRTLTPPHAIP 106 PP + S V PP P S P P PP A P Sbjct: 970 PPPPESSLVFPPPPPSPVPAPPPPPPPTASP 1000
>STP2_RAT (P11101) Nuclear transition protein 2 (TP-2) (TP2)| Length = 114 Score = 28.1 bits (61), Expect = 8.6 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +1 Query: 61 ASSRSPNPDPPACHPTSPL 117 +SS SP+P PP HP +P+ Sbjct: 45 SSSSSPSPGPPTKHPKTPM 63
>ROBO1_HUMAN (Q9Y6N7) Roundabout homolog 1 precursor (H-Robo-1) (Deleted in U| twenty twenty) Length = 1651 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = +2 Query: 17 PRRDRSPVLPPRPHSRAPDPRTLTPPH 97 P R R PV PP P PR ++PPH Sbjct: 1289 PDRRRQPVSPP------PPPRPISPPH 1309
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.1 bits (61), Expect = 8.6 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 6/40 (15%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDP---RTLTP---PHAIPLAR 115 PP RD SP P + +P P R+L+P PH+ P +R Sbjct: 45 PPSRDPSPYRSPGERTPSPSPRRDRSLSPRDQPHSHPRSR 84
>CO6A3_CHICK (P15989) Collagen alpha-3(VI) chain precursor| Length = 3137 Score = 28.1 bits (61), Expect = 8.6 Identities = 18/47 (38%), Positives = 22/47 (46%) Frame = -2 Query: 401 GEDLGRVARGDAGRLLAGEAVAVGQRGERGGLALGHLVDGDGDRGAA 261 G+ R GD GR G G++GERG + G GDRG A Sbjct: 2290 GQQGPRGEMGDDGRDGIGGPGPKGRKGERGFVGYPGPKGGPGDRGGA 2336
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 14 PPRRDRSPVLPPRPHSRAPDPRTLTPPHA 100 PPR +SP+LPP P P T +P A Sbjct: 223 PPRAKKSPLLPPPPPVAYPPVMTPSPSPA 251 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.306 0.123 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,190,906 Number of Sequences: 219361 Number of extensions: 651422 Number of successful extensions: 3110 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 2586 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3072 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (22.0 bits)
