>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c) (p105)
          Length = 900

 Score = 32.7 bits (73), Expect = 0.50
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +3

Query: 318 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKGQRMMR*SY 476
           GS+SE       E  +   D   NRYL   ++D DD+DT+  RV++  K +R    +Y
Sbjct: 10  GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTDTK--RVVKPAKDKRFEEMTY 65

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 360 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 256
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 408 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 262
           HH ++ + S   S +H +P       ++H  ++   +P PPQ   +PVP
Sbjct: 47  HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 345  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 244
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 345  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 244
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 345  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 244
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +1

Query: 211 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 345
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>TCGAP_HUMAN (O14559) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1287

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +3

Query: 321 SDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKG 452
           S SE S AG G   GS +   + +  D D+ D    R +  L+G
Sbjct: 694 SSSESSAAGLGALSGSPSHRTSAWLDDGDELDFSPPRCLEGLRG 737

>GAT15_ARATH (Q9ZPX0) Putative GATA transcription factor 15|
          Length = 207

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
 Frame = -1

Query: 465 SSCAVPSTSESRGGSQYQSHHCLVYICSDNGSWTH----RVPH 349
           S+  VP  +   GG  Y SHH   Y  S + SW H    RVP+
Sbjct: 142 SAAEVPVENSYNGGGNYYSHHHHHY-ASSSPSWAHQNTQRVPY 183

>TCGAP_MOUSE (Q80YF9) TC10/CDC42 GTPase-activating protein (Sorting nexin 26)|
          Length = 1305

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 16/63 (25%), Positives = 21/63 (33%)
 Frame = +3

Query: 264 GQGXXXXXXXXXXXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRS 443
           G                  S SE S  G G   GS +   + +  D DD D    R +  
Sbjct: 697 GSCESLSSSSSSSSSSSSSSSSESSAGGLGPLSGSPSHRTSAWLDDGDDLDFSPPRCLEG 756

Query: 444 LKG 452
           L+G
Sbjct: 757 LRG 759

>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)|
          Length = 3461

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468  ISSCAVPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 346
            + +  +PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3156 VQTQCLPSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3199

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -1

Query: 354 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 259
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)|
          Length = 3462

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468  ISSCAVPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 346
            + +  +PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3157 VQTQCLPSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3200

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 150 NSPFSAGSEPHPLHGRDSSLKTAEGNLQAAAAMASRF 260
           N+  S  +  +P +GR +  KT E N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 262 QKRDAMAAAACKLPSAVFKLESRPWSG*GSDPAENGE 152
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344

>RELN_HUMAN (P78509) Reelin precursor (EC 3.4.21.-)|
          Length = 3460

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = -1

Query: 468  ISSCAVPSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 346
            + +  +PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3155 VQTQCLPSSSNSIGCSPFQFHEATIYNSVNSSSWKRITIQLPDH 3198

>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 935

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = +3

Query: 246 MASRFWGQGXXXXXXXXX-XXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTE 422
           M SRF+ QG               + SD+E +     G    K++YL     D  D D  
Sbjct: 1   MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNG----KSKYLAGGNADDSDDDDG 56

Query: 423 SHRVIRSLKGQR 458
             RV++S K +R
Sbjct: 57  QKRVVKSAKDKR 68

>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)|
          Length = 203

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 408 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 250
           HH ++ + S     TH +  H      +H  V+   +P  PQ   +PVP  ++
Sbjct: 77  HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,152,356
Number of Sequences: 219361
Number of extensions: 996951
Number of successful extensions: 4554
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4539
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)