>ARFG_ARATH (P93022) Auxin response factor 7 (Non-phototropic hypocotyl 4)|
           (Protein BIPOSTO) (Auxin-responsive protein
           IAA21/IAA23/IAA25)
          Length = 1164

 Score =  130 bits (327), Expect = 1e-30
 Identities = 60/76 (78%), Positives = 69/76 (90%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +N ELW+ACAGPL++LPP GSLVVYFPQGHSEQVAASM+K  D  IPSYPNLPSKLIC+L
Sbjct: 21  INSELWHACAGPLISLPPAGSLVVYFPQGHSEQVAASMQKQTDF-IPSYPNLPSKLICML 79

Query: 370 HSVTMQSDPETDEVYA 417
           H+VT+ +DPETDEVYA
Sbjct: 80  HNVTLNADPETDEVYA 95

>ARFS_ARATH (Q8RYC8) Auxin response factor 19 (Auxin-responsive protein IAA22)|
          Length = 1086

 Score =  126 bits (317), Expect = 2e-29
 Identities = 59/76 (77%), Positives = 68/76 (89%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +N +LW+ACAGPLV+LPP GSLVVYFPQGHSEQVAASM+K  D  IP+YPNLPSKLIC+L
Sbjct: 20  INSQLWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKQTDF-IPNYPNLPSKLICLL 78

Query: 370 HSVTMQSDPETDEVYA 417
           HSVT+ +D ETDEVYA
Sbjct: 79  HSVTLHADTETDEVYA 94

>ARFF_ARATH (Q9ZTX8) Auxin response factor 6|
          Length = 933

 Score =  118 bits (296), Expect = 5e-27
 Identities = 55/76 (72%), Positives = 64/76 (84%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +N ELW+ACAGPLV+LPP GS VVYFPQGHSEQVAAS  K+ DA IP+YP+L  +LIC L
Sbjct: 20  LNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPNYPSLHPQLICQL 79

Query: 370 HSVTMQSDPETDEVYA 417
           H+VTM +D ETDEVYA
Sbjct: 80  HNVTMHADVETDEVYA 95

>ARFH_ARATH (Q9FGV1) Auxin response factor 8|
          Length = 811

 Score =  116 bits (291), Expect = 2e-26
 Identities = 53/76 (69%), Positives = 63/76 (82%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +N ELW+ACAGPLV+LP  GS VVYFPQGHSEQVAA+  K+ D  IP+YP+LP +LIC L
Sbjct: 19  LNSELWHACAGPLVSLPSSGSRVVYFPQGHSEQVAATTNKEVDGHIPNYPSLPPQLICQL 78

Query: 370 HSVTMQSDPETDEVYA 417
           H+VTM +D ETDEVYA
Sbjct: 79  HNVTMHADVETDEVYA 94

>ARFE_ARATH (P93024) Auxin response factor 5 (Transcription factor MONOPTEROS)|
           (Auxin-responsive protein IAA24)
          Length = 902

 Score =  111 bits (278), Expect = 6e-25
 Identities = 48/76 (63%), Positives = 62/76 (81%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +N ELW+ACAGPLV LP  GSLV YF QGHSEQVA S R+ A  Q+P+YPNLPS+L+C +
Sbjct: 51  INSELWHACAGPLVCLPQVGSLVYYFSQGHSEQVAVSTRRSATTQVPNYPNLPSQLMCQV 110

Query: 370 HSVTMQSDPETDEVYA 417
           H+VT+ +D ++DE+YA
Sbjct: 111 HNVTLHADKDSDEIYA 126

>ARFA_ARATH (Q8L7G0) Auxin response factor 1|
          Length = 665

 Score = 91.3 bits (225), Expect = 8e-19
 Identities = 41/74 (55%), Positives = 57/74 (77%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           +ELW+ACAGPLV LP  G  V YFP+GH EQ+ ASM +  + Q+PS+ NLPSK++C + +
Sbjct: 21  RELWHACAGPLVTLPREGERVYYFPEGHMEQLEASMHQGLEQQMPSF-NLPSKILCKVIN 79

Query: 376 VTMQSDPETDEVYA 417
           +  +++PETDEVYA
Sbjct: 80  IQRRAEPETDEVYA 93

>ARFB_ARATH (Q94JM3) Auxin response factor 2 (ARF1-binding protein) (ARF1-BP)|
          Length = 859

 Score = 84.0 bits (206), Expect = 1e-16
 Identities = 40/74 (54%), Positives = 55/74 (74%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           +ELW+ACAGPLV +P     V YFPQGH EQV AS  + A+ Q+P Y +LPSKL+C + +
Sbjct: 60  RELWHACAGPLVTVPRQDDRVFYFPQGHIEQVEASTNQAAEQQMPLY-DLPSKLLCRVIN 118

Query: 376 VTMQSDPETDEVYA 417
           V ++++ +TDEVYA
Sbjct: 119 VDLKAEADTDEVYA 132

>ARFK_ARATH (Q9ZPY6) Auxin response factor 11|
          Length = 601

 Score = 80.9 bits (198), Expect = 1e-15
 Identities = 41/74 (55%), Positives = 53/74 (71%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199 ELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKD-ADAQIPSYPNLPSKLICILHS 375
           ELW ACAGPLV +P  G  V YFPQGH EQ+ AS  +   D +IP + NLP K++C + S
Sbjct: 21  ELWKACAGPLVEVPRYGERVFYFPQGHMEQLVASTNQGVVDQEIPVF-NLPPKILCRVLS 79

Query: 376 VTMQSDPETDEVYA 417
           VT++++ ETDEVYA
Sbjct: 80  VTLKAEHETDEVYA 93

>ARFR_ARATH (Q9C5W9) Auxin response factor 18|
          Length = 602

 Score = 72.0 bits (175), Expect = 5e-13
 Identities = 34/73 (46%), Positives = 48/73 (65%)
 Frame = +1

Query: 199 ELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSV 378
           ELW  CAGPLV +P     V YFPQGH EQ+ AS  +  +++     +LP K++C +  V
Sbjct: 25  ELWKVCAGPLVEVPRAQERVFYFPQGHMEQLVASTNQGINSEEIPVFDLPPKILCRVLDV 84

Query: 379 TMQSDPETDEVYA 417
           T++++ ETDEVYA
Sbjct: 85  TLKAEHETDEVYA 97

>ARFM_ARATH (Q9FX25) Putative auxin response factor 13|
          Length = 623

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 36/74 (48%), Positives = 46/74 (62%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  LP PG  V YFPQGH E +  S R + D   P + +LPSKL C + +
Sbjct: 26  EKLWNICAGPLCVLPKPGEKVYYFPQGHIELIENSTRDELDHIRPIF-DLPSKLRCRVVA 84

Query: 376 VTMQSDPETDEVYA 417
           +  + D  TDEVYA
Sbjct: 85  IDRKVDKNTDEVYA 98

>ARFI_ARATH (Q9XED8) Auxin response factor 9|
          Length = 638

 Score = 69.3 bits (168), Expect = 3e-12
 Identities = 35/74 (47%), Positives = 50/74 (67%), Gaps = 1/74 (1%)
 Frame = +1

Query: 199 ELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRK-DADAQIPSYPNLPSKLICILHS 375
           ELW  CAGPLV +P     V YFPQGH EQ+ AS ++ D +   P +  LP K++C + +
Sbjct: 12  ELWKLCAGPLVDVPQAQERVYYFPQGHMEQLEASTQQVDLNTMKPLFV-LPPKILCNVMN 70

Query: 376 VTMQSDPETDEVYA 417
           V++Q++ +TDEVYA
Sbjct: 71  VSLQAEKDTDEVYA 84

>ARFD_ARATH (Q9ZTX9) Auxin response factor 4|
          Length = 788

 Score = 68.2 bits (165), Expect = 7e-12
 Identities = 33/75 (44%), Positives = 51/75 (68%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           +  ELW+ACAGPL  LP  G++VVYFPQGH EQ  A +   +  +IP + +L  +++C +
Sbjct: 62  IYSELWHACAGPLTCLPKKGNVVVYFPQGHLEQ-DAMVSYSSPLEIPKF-DLNPQIVCRV 119

Query: 370 HSVTMQSDPETDEVY 414
            +V + ++ +TDEVY
Sbjct: 120 VNVQLLANKDTDEVY 134

>ARFC_ARATH (O23661) Auxin response factor 3 (Protein ETTIN)|
          Length = 608

 Score = 67.4 bits (163), Expect = 1e-11
 Identities = 36/73 (49%), Positives = 45/73 (61%)
 Frame = +1

Query: 199 ELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHSV 378
           ELW+ACAGPL++LP  GSLV+YFPQGH EQ       D  A I     LP  + C +  V
Sbjct: 54  ELWHACAGPLISLPKRGSLVLYFPQGHLEQA-----PDFSAAI---YGLPPHVFCRILDV 105

Query: 379 TMQSDPETDEVYA 417
            + ++  TDEVYA
Sbjct: 106 KLHAETTTDEVYA 118

>ARFL_ARATH (Q9XID4) Putative auxin response factor 12|
          Length = 593

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 31/76 (40%), Positives = 47/76 (61%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           V ++LW  CAGPL  +P  G  V YFPQGH E V  S R++ + ++    +LPSKL C +
Sbjct: 24  VYEQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVETSTREELN-ELQPICDLPSKLQCRV 82

Query: 370 HSVTMQSDPETDEVYA 417
            ++ ++ +  +DE YA
Sbjct: 83  IAIHLKVENNSDETYA 98

>ARFW_ARATH (Q9LP07) Putative auxin response factor 23|
          Length = 222

 Score = 62.0 bits (149), Expect = 5e-10
 Identities = 31/73 (42%), Positives = 46/73 (63%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  V YFPQGH E V AS R++ +   P+  +LPSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELNELQPNC-DLPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVY 414
           + ++ +  +DE Y
Sbjct: 85  IHLKVENNSDETY 97

>ARFN_ARATH (Q9LQE8) Putative auxin response factor 14|
          Length = 605

 Score = 61.6 bits (148), Expect = 7e-10
 Identities = 30/74 (40%), Positives = 46/74 (62%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  V YFPQGH E V AS R++ + ++    + PSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGEKVYYFPQGHIELVEASTREELN-ELQPICDFPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVYA 417
           + ++ +  +DE YA
Sbjct: 85  IQLKVENNSDETYA 98

>ARFU_ARATH (Q9C8N9) Putative auxin response factor 21|
          Length = 606

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/74 (40%), Positives = 48/74 (64%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  V YFPQG+ E V AS R++ + ++    +LPSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGENVYYFPQGNIELVQASTREELN-ELQPICDLPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVYA 417
           + ++ +  +DE+YA
Sbjct: 85  IHLKVENNSDEIYA 98

>ARFV_ARATH (Q9C8N7) Putative auxin response factor 22|
          Length = 598

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 29/74 (39%), Positives = 47/74 (63%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  + YFPQG+ E V AS R++ + ++    +LPSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGEKIYYFPQGNIELVEASTREELN-ELKPICDLPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVYA 417
           + ++ +  +DE YA
Sbjct: 85  IQLKVENNSDETYA 98

>ARFO_ARATH (Q9LQE3) Putative auxin response factor 15|
          Length = 593

 Score = 60.1 bits (144), Expect = 2e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  V YFPQG+ E V AS R++ + ++    +LPSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGEKVYYFPQGNIELVEASTREELN-ELQPICDLPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVYA 417
           + ++ +  +DE YA
Sbjct: 85  IHLKVENNSDETYA 98

>ARFT_ARATH (Q9C7I9) Putative auxin response factor 20|
          Length = 606

 Score = 59.3 bits (142), Expect = 3e-09
 Identities = 30/74 (40%), Positives = 47/74 (63%)
 Frame = +1

Query: 196 QELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICILHS 375
           ++LW  CAGPL  +P  G  V YFPQG+ E V AS R++ + ++    +LPSKL C + +
Sbjct: 26  EQLWKLCAGPLCDIPKLGENVYYFPQGNIELVDASTREELN-ELQPICDLPSKLQCRVIA 84

Query: 376 VTMQSDPETDEVYA 417
           + ++ +  +DE YA
Sbjct: 85  IHLKVENNSDETYA 98

>ARFJ_ARATH (Q9SKN5) Auxin response factor 10|
          Length = 693

 Score = 57.4 bits (137), Expect = 1e-08
 Identities = 30/76 (39%), Positives = 43/76 (56%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           ++ +LW+ACAG +V +P   S V YF QGH+E   A     A       P +P  ++C +
Sbjct: 7   LDPQLWHACAGSMVQIPSLNSTVFYFAQGHTEHAHAPPDFHA-------PRVPPLILCRV 59

Query: 370 HSVTMQSDPETDEVYA 417
            SV   +D ETDEV+A
Sbjct: 60  VSVKFLADAETDEVFA 75

>ARFP_ARATH (Q93YR9) Auxin response factor 16|
          Length = 670

 Score = 55.5 bits (132), Expect = 5e-08
 Identities = 27/76 (35%), Positives = 45/76 (59%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           ++ +LW+ACAG +V +PP  S V YFPQGH+E     +         + P +P  ++C +
Sbjct: 16  LDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCV------DFGNLP-IPPMVLCRV 68

Query: 370 HSVTMQSDPETDEVYA 417
            ++   +D E+DEV+A
Sbjct: 69  LAIKYMADAESDEVFA 84

>ARFQ_ARATH (Q84WU6) Auxin response factor 17|
          Length = 585

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = +1

Query: 190 VNQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPSYPNLPSKLICIL 369
           V+  +W ACAG  V +P   S V YFPQGH E             + + P+  S + CI+
Sbjct: 16  VDPTIWRACAGASVQIPVLHSRVYYFPQGHVEHCC--------PLLSTLPSSTSPVPCII 67

Query: 370 HSVTMQSDPETDEVYA 417
            S+ + +DP TDEV+A
Sbjct: 68  TSIQLLADPVTDEVFA 83

>S23IP_HUMAN (Q9Y6Y8) SEC23-interacting protein (p125)|
          Length = 1000

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +1

Query: 220 GPLVALPPPGSLVVYF--PQGHSEQVAASMRKDADAQIPSYPNLPS 351
           GP    PP G  V  +  P G    V +S++  A  Q+P+ P  PS
Sbjct: 208 GPPAHPPPSGPPVQMYQMPPGSLPPVPSSVQSPAQQQVPARPGAPS 253

>DLX4B_BRARE (Q98878) Homeobox protein Dlx4b (DLX-7) (Distal-less homeobox|
           protein 4b)
          Length = 254

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = +1

Query: 193 NQELWYACAGPLVALPPPGSLVVYFPQGHSEQVAASMRKDADAQIPS 333
           ++ L YA  GP V+   PG+ + Y P  HS  +A +  +D + + P+
Sbjct: 68  SRPLGYAYPGP-VSAAAPGAYMPYQPNNHSGALAHTRAEDTNHEKPA 113

>BRWD1_MOUSE (Q921C3) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2304

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 235  LPPPGSLVVYFPQGHSEQVAASMRKD 312
            +P  G  V+YFPQGH   + A  R +
Sbjct: 959  VPQMGDEVIYFPQGHEAYIEAVRRNN 984


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,347,975
Number of Sequences: 219361
Number of extensions: 505809
Number of successful extensions: 1398
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)