>NUMA1_HUMAN (Q14980) Nuclear mitotic apparatus protein 1 (NuMA protein) (SP-H|
            antigen)
          Length = 2115

 Score = 31.6 bits (70), Expect = 0.91
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = +3

Query: 219  GALLPHVAAAGISARLATRRFPRASRIPASATTVGWISATPR 344
            GA    ++ A  + R  TRR PR +   ASA T   I ATPR
Sbjct: 2067 GASKKALSKASPNTRSGTRRSPRIATTTASAATAAAIGATPR 2108

>MMP21_MOUSE (Q8K3F2) Matrix metalloproteinase-21 precursor (EC 3.4.24.-)|
           (MMP-21)
          Length = 568

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = +3

Query: 174 WS-LPAPRRSAAGAVPGALLPHVAAAGISARLATRRFPRASRIPASATTVGWISATPRHP 350
           WS +P+P+ SA   V           G +   A RRF +A+R+PAS        A    P
Sbjct: 62  WSEIPSPKESAGVPV-----------GFTLAQAVRRFQKANRLPASGELDSPTLAAMNKP 110

Query: 351 L*PVRASRLPSKPHISSC*CVITS 422
              V  +RLP +  + +   ++TS
Sbjct: 111 RCGVPDTRLPPRAALPTPPALLTS 134

>PKNJ_MYCTU (P65732) Probable serine/threonine-protein kinase pknJ (EC|
           2.7.11.1)
          Length = 589

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 189 PRRSAAGAVPGALLPHVAAAGISARLATRRFPRASRIPASATTVGWISAT--PRHPL*PV 362
           PRR   G    A +  VAAA ++A   T   PR +  P++A      S+T  P+ P+  V
Sbjct: 337 PRRYRRGVAAVAAVMVVAAAAVTAVTMTSHQPRTATPPSAAALSPTSSSTTPPQPPI--V 394

Query: 363 RASRLP 380
             SRLP
Sbjct: 395 TRSRLP 400

>PKNJ_MYCBO (P65733) Probable serine/threonine-protein kinase pknJ (EC|
           2.7.11.1)
          Length = 589

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +3

Query: 189 PRRSAAGAVPGALLPHVAAAGISARLATRRFPRASRIPASATTVGWISAT--PRHPL*PV 362
           PRR   G    A +  VAAA ++A   T   PR +  P++A      S+T  P+ P+  V
Sbjct: 337 PRRYRRGVAAVAAVMVVAAAAVTAVTMTSHQPRTATPPSAAALSPTSSSTTPPQPPI--V 394

Query: 363 RASRLP 380
             SRLP
Sbjct: 395 TRSRLP 400

>PACS1_RAT (O88588) Phosphofurin acidic cluster sorting protein 1 (PACS-1)|
          Length = 961

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
 Frame = +1

Query: 31  PPRFPRRGAMSRPPAAAQPNSTVAAQFNQXXXXXXXXXXXXXXXXXVAGPFQPLGVPRPA 210
           PP+ P +     PP  AQ  S+ ++  +                  VA    P G P P 
Sbjct: 33  PPQQPSQPQQPTPPKLAQATSS-SSSTSAAAASSSSSSTSTSMAVAVASGSAPPGGPGPG 91

Query: 211 PFPAP----FYHTW 240
             PAP     Y TW
Sbjct: 92  RTPAPVQMNLYATW 105

>NR4A3_MOUSE (Q9QZB6) Orphan nuclear receptor NR4A3 (Orphan nuclear receptor|
           TEC) (Translocated in extraskeletal chondrosarcoma)
          Length = 627

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 177 SLPAPRRSAAGAVPGALLPHVAAAGISARLATRRFPRASRIPASATTVGWISATPRHPL* 356
           SLP    +AAG+   AL  H     ++ R AT  FP    + AS T    +  +P  P  
Sbjct: 223 SLPLGAAAAAGSQAAALEGHPYGLPLAKRTATLTFPPLG-LTASPTASSLLGESPSLPSP 281

Query: 357 PVRAS 371
           P R+S
Sbjct: 282 PNRSS 286

>NR4A3_RAT (P51179) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor|
           NOR-1/NOR-2) (Neuron-derived orphan receptor 1/2)
          Length = 628

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 22/65 (33%), Positives = 30/65 (46%)
 Frame = +3

Query: 177 SLPAPRRSAAGAVPGALLPHVAAAGISARLATRRFPRASRIPASATTVGWISATPRHPL* 356
           SLP    +AAG+   AL  H     ++ R AT  FP    + AS T    +  +P  P  
Sbjct: 224 SLPLGAAAAAGSQAAALEGHPYGLPLAKRTATLTFPPLG-LTASPTASSLLGESPSLPSP 282

Query: 357 PVRAS 371
           P R+S
Sbjct: 283 PNRSS 287

>VEGA_MYXXA (P07935) Vegetative protein|
          Length = 178

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/19 (68%), Positives = 14/19 (73%)
 Frame = -1

Query: 256 EIPAAATCGRRAPGTAPAA 200
           +IPAAA  GRR PG  PAA
Sbjct: 60  QIPAAAKAGRRGPGRPPAA 78

>FUMC_PSEPK (Q88M20) Fumarate hydratase class II (EC 4.2.1.2) (Fumarase C)|
          Length = 464

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +2

Query: 278 LSAGLAYTSLRHHRRVDFGHT---QAPPLT 358
           LS+GLA  S+RHH+ V  G T    A P+T
Sbjct: 165 LSSGLAELSMRHHKLVKTGRTHMMDATPIT 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,757,946
Number of Sequences: 219361
Number of extensions: 851604
Number of successful extensions: 4192
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4164
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)