ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothet... 133 5e-28
2gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 geno... 133 5e-28
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 133 5e-28
4dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clon... 133 5e-28
5gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 133 5e-28
6gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
7gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome... 60 7e-06
8dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 60 7e-06
9gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 46 0.098
10ref|XM_464380.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.39
11gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 44 0.39
12gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 44 0.39
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
14dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
15dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.39
16dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 44 0.39
17gb|U64032.1|OCU64032 Oryctolagus cuniculus alpha 1d adrenoceptor... 44 0.39
18gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 42 1.5
19gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.5
20gb|AE004900.1| Pseudomonas aeruginosa PAO1, section 461 of 529 o... 42 1.5
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 6.1
22gb|BC042060.1| Homo sapiens olfactory receptor, family 7, subfam... 40 6.1
23ref|NM_001031182.1| Gallus gallus phosphodiesterase 3B, cGMP-inh... 40 6.1
24ref|XM_470689.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.1
25gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 6.1
26gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
27gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 6.1
28gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 6.1
29gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.1
30ref|XM_504009.1| Yarrowia lipolytica CLIB122, YALI0E16170g predi... 40 6.1
31gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genom... 40 6.1
32emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 6.1
33emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 6.1
34emb|AJ851613.1| Gallus gallus mRNA for hypothetical protein, clo... 40 6.1
35gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 6.1
36gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 6.1
37dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
38gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Ca... 40 6.1
39ref|NM_001009843.1| Felis catus CD8 antigen, alpha polypeptide (... 40 6.1
40gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin ... 40 6.1
41dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
42dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
43dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
44dbj|AK112008.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
45dbj|AK112004.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
46dbj|AK111709.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
47dbj|AB100603.1| Mus musculus Notch1 gene for transmembrane recep... 40 6.1
48dbj|AK100203.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
49dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
50gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, r... 40 6.1
51gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40... 40 6.1
52dbj|D16536.1|CATCD8AC Felis catus mRNA for CD8 alpha-chain, comp... 40 6.1
53emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome 40 6.1
54gb|AE017221.1| Thermus thermophilus HB27, complete genome 40 6.1
55gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromoso... 40 6.1
56emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB ... 40 6.1
57emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on ch... 40 6.1
58dbj|AB000485.1| Felis catus mRNA for CD8 alpha antigen, complete... 40 6.1 
>ref|NM_197633.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0082M15.22), mRNA
          Length = 3246

 Score =  133 bits (67), Expect = 5e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                       
Query: 295 ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
           |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 180 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 239

                                                                       
Query: 355 cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggccaggtgctaccagcg 414
           |||||||||||| || || |  ||||||||||||||||| ||||||| |||||| |||||
Sbjct: 240 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcg 299

              
Query: 415 ggc 417
           |||
Sbjct: 300 ggc 302
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>gb|AC020666.8| Oryza sativa chromosome 10 BAC OSJNBa0082M15 genomic sequence, complete
              sequence
          Length = 158550

 Score =  133 bits (67), Expect = 5e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                          
Query: 295    ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
              |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 130442 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 130501

                                                                          
Query: 355    cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggccaggtgctaccagcg 414
              |||||||||||| || || |  ||||||||||||||||| ||||||| |||||| |||||
Sbjct: 130502 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcg 130561

                 
Query: 415    ggc 417
              |||
Sbjct: 130562 ggc 130564
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  133 bits (67), Expect = 5e-28
 Identities = 109/123 (88%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 20933949 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 20933890

                                                                            
Query: 355      cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggccaggtgctaccagcg 414
                |||||||||||| || || |  ||||||||||||||||| ||||||| |||||| |||||
Sbjct: 20933889 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcg 20933830

                   
Query: 415      ggc 417
                |||
Sbjct: 20933829 ggc 20933827
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>dbj|AK103617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033133L07, full
           insert sequence
          Length = 3864

 Score =  133 bits (67), Expect = 5e-28
 Identities = 109/123 (88%)
 Strand = Plus / Plus

                                                                       
Query: 295 ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
           |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 277 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 336

                                                                       
Query: 355 cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggccaggtgctaccagcg 414
           |||||||||||| || || |  ||||||||||||||||| ||||||| |||||| |||||
Sbjct: 337 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcg 396

              
Query: 415 ggc 417
           |||
Sbjct: 397 ggc 399
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  133 bits (67), Expect = 5e-28
 Identities = 109/123 (88%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||||| |||||||||| ||||||||| |||||||||||||||  |||||||||| 
Sbjct: 20945213 ggccgagcgcttcctcgcggcggccaagctggaccccaacgacggcgtccccttccgctt 20945154

                                                                            
Query: 355      cctcggccaccactacgcccgcgccggcgacgcgcagcgcgcggccaggtgctaccagcg 414
                |||||||||||| || || |  ||||||||||||||||| ||||||| |||||| |||||
Sbjct: 20945153 cctcggccaccattatgcgcttgccggcgacgcgcagcgagcggccaagtgctatcagcg 20945094

                   
Query: 415      ggc 417
                |||
Sbjct: 20945093 ggc 20945091
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>gb|AC136525.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0585E02,
             complete sequence
          Length = 138677

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 295   ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
             |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 17179 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 17120

                       
Query: 355   cctcggccac 364
             ||| ||||||
Sbjct: 17119 cctaggccac 17110
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>gb|AC145476.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1023E01,
             complete sequence
          Length = 140322

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                         
Query: 295   ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
             |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 43952 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 43893

                       
Query: 355   cctcggccac 364
             ||| ||||||
Sbjct: 43892 cctaggccac 43883
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                            
Query: 295      ggccgagcgcctcctcgcggccgccaagctgaaccccaacgacggcgggcccttccgctc 354
                |||||||| | ||||||  || |||||||||||||||||||||||||  | |||||||| 
Sbjct: 13588044 ggccgagcacttcctcgatgcggccaagctgaaccccaacgacggcgtcctcttccgctt 13587985

                          
Query: 355      cctcggccac 364
                ||| ||||||
Sbjct: 13587984 cctaggccac 13587975



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 373     ccgcgccggcgacgcgcagc 392
               ||||||||||||||||||||
Sbjct: 4203891 ccgcgccggcgacgcgcagc 4203872
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                          
Query: 374     cgcgccggcgacgcgcagcgcgcggcc 400
               |||| ||||||||||||||||||||||
Sbjct: 1941532 cgcgtcggcgacgcgcagcgcgcggcc 1941558
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>ref|XM_464380.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1572

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 281 ggcgcggaggaggaggccgagcgcctcctcgcgg 314
           ||||||||||||| |||||||| | |||||||||
Sbjct: 489 ggcgcggaggaggcggccgagctcgtcctcgcgg 456
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 375     gcgccggcgacgcgcagcgcgcggcc 400
               |||||||||||||||||| |||||||
Sbjct: 2583072 gcgccggcgacgcgcagcacgcggcc 2583097
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 379     cggcgacgcgcagcgcgcggcc 400
               ||||||||||||||||||||||
Sbjct: 1133214 cggcgacgcgcagcgcgcggcc 1133235
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                 
Query: 281     ggcgcggaggaggaggccgagcgcctcctcgcgg 314
               ||||||||||||| |||||||| | |||||||||
Sbjct: 4829156 ggcgcggaggaggcggccgagctcgtcctcgcgg 4829123



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 209      caccagcagcaccgcagcac 228
                ||||||||||||||||||||
Sbjct: 23718183 caccagcagcaccgcagcac 23718202



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 209     caccagcagcaccgcagcac 228
               ||||||||||||||||||||
Sbjct: 9231999 caccagcagcaccgcagcac 9231980



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 300     agcgcctcctcgcggccgcc 319
               ||||||||||||||||||||
Sbjct: 8205337 agcgcctcctcgcggccgcc 8205318
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>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1115_B01
          Length = 129329

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                                
Query: 281    ggcgcggaggaggaggccgagcgcctcctcgcgg 314
              ||||||||||||| |||||||| | |||||||||
Sbjct: 109746 ggcgcggaggaggcggccgagctcgtcctcgcgg 109713
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>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1073_F05
          Length = 124252

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 281   ggcgcggaggaggaggccgagcgcctcctcgcgg 314
             ||||||||||||| |||||||| | |||||||||
Sbjct: 71315 ggcgcggaggaggcggccgagctcgtcctcgcgg 71282
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 291     aggaggccgagcgcctcctcgc 312
               ||||||||||||||||||||||
Sbjct: 9084217 aggaggccgagcgcctcctcgc 9084238
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>gb|U64032.1|OCU64032 Oryctolagus cuniculus alpha 1d adrenoceptor mRNA, complete cds
          Length = 1731

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 373  ccgcgccggcgacgcgcagcgcgcgg 398
            ||||||||||| ||||||||||||||
Sbjct: 1575 ccgcgccggcggcgcgcagcgcgcgg 1600
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 374    cgcgccggcgacgcgcagcgcgcggccag 402
              |||||| |||| |||||||||||||||||
Sbjct: 894953 cgcgcccgcgatgcgcagcgcgcggccag 894925
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 373     ccgcgccggcgacgcgcagcg 393
               |||||||||||||||||||||
Sbjct: 2053265 ccgcgccggcgacgcgcagcg 2053245
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>gb|AE004900.1| Pseudomonas aeruginosa PAO1, section 461 of 529 of the complete
            genome
          Length = 10147

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 367  ctacgcccgcgccggcgacgc 387
            |||||||||||||||||||||
Sbjct: 1404 ctacgcccgcgccggcgacgc 1424
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 359     ggccaccactacgcccgcgccggc 382
               ||||||||| ||||||||||||||
Sbjct: 2286138 ggccaccacgacgcccgcgccggc 2286115
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>gb|BC042060.1| Homo sapiens olfactory receptor, family 7, subfamily E, member 47
           pseudogene, mRNA (cDNA clone IMAGE:5590288)
          Length = 1422

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 280 gggcgcggaggaggaggccg 299
           ||||||||||||||||||||
Sbjct: 271 gggcgcggaggaggaggccg 252
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>ref|NM_001031182.1| Gallus gallus phosphodiesterase 3B, cGMP-inhibited (PDE3B), mRNA
          Length = 4104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 ggcggagcaccagcagcacc 221
           ||||||||||||||||||||
Sbjct: 969 ggcggagcaccagcagcacc 988
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>ref|XM_470689.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1500

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 277  gcagggcgcggaggaggagg 296
            ||||||||||||||||||||
Sbjct: 981  gcagggcgcggaggaggagg 1000
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 294    aggccgagcgcctcctcgcggccgccaagctg 325
              |||||||||||||||||| | |||| ||||||
Sbjct: 513155 aggccgagcgcctcctcgagcccgcgaagctg 513124
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>gb|AC087553.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0685E10,
             complete sequence
          Length = 156772

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ccgcgccggcgacgcgcagc 392
             ||||||||||||||||||||
Sbjct: 90370 ccgcgccggcgacgcgcagc 90351
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 430     ccccgacgacgccgaggccg 449
               ||||||||||||||||||||
Sbjct: 1190079 ccccgacgacgccgaggccg 1190060
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 370    cgcccgcgccggcgacgcgc 389
              ||||||||||||||||||||
Sbjct: 101201 cgcccgcgccggcgacgcgc 101182
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      gcagggcgcggaggaggagg 296
                ||||||||||||||||||||
Sbjct: 14556508 gcagggcgcggaggaggagg 14556527
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>ref|XM_504009.1| Yarrowia lipolytica CLIB122, YALI0E16170g predicted mRNA
          Length = 1707

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 431 cccgacgacgccgaggccgg 450
           ||||||||||||||||||||
Sbjct: 100 cccgacgacgccgaggccgg 119
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>gb|AC084765.9| Oryza sativa chromosome 3 BAC OSJNBa0090L05 genomic sequence, complete
              sequence
          Length = 147130

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 277    gcagggcgcggaggaggagg 296
              ||||||||||||||||||||
Sbjct: 101203 gcagggcgcggaggaggagg 101184
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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 369   acgcccgcgccggcgacgcgcagcgcgc 396
             |||||||||||  |||||||||||||||
Sbjct: 47299 acgcccgcgccatcgacgcgcagcgcgc 47326
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cgcccgcgccggcgacgcgc 389
               ||||||||||||||||||||
Sbjct: 1496789 cgcccgcgccggcgacgcgc 1496770
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>emb|AJ851613.1| Gallus gallus mRNA for hypothetical protein, clone 11f1
          Length = 4104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 202 ggcggagcaccagcagcacc 221
           ||||||||||||||||||||
Sbjct: 969 ggcggagcaccagcagcacc 988
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 371    gcccgcgccggcgacgcgca 390
              ||||||||||||||||||||
Sbjct: 650103 gcccgcgccggcgacgcgca 650084
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 370     cgcccgcgccggcgacgcgc 389
               ||||||||||||||||||||
Sbjct: 1080702 cgcccgcgccggcgacgcgc 1080683
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 277      gcagggcgcggaggaggagg 296
                ||||||||||||||||||||
Sbjct: 14551483 gcagggcgcggaggaggagg 14551502
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>gb|AC025259.49| Homo sapiens 12 BAC RP11-1100L3 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 212622

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 280  gggcgcggaggaggaggccg 299
            ||||||||||||||||||||
Sbjct: 3755 gggcgcggaggaggaggccg 3774
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>ref|NM_001009843.1| Felis catus CD8 antigen, alpha polypeptide (CD8A), mRNA
          Length = 795

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 432 ccaccactacgcccgcgccg 451
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>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster,
             complete sequence
          Length = 123580

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   aggccgagcgcctcctcgcg 313
             ||||||||||||||||||||
Sbjct: 17385 aggccgagcgcctcctcgcg 17404
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>dbj|AP004117.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1134_F06
          Length = 130968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   agcgcctcctcgcggccgcc 319
             ||||||||||||||||||||
Sbjct: 37483 agcgcctcctcgcggccgcc 37464
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>dbj|AP005631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBb0049K19
          Length = 131932

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 209   caccagcagcaccgcagcac 228
             ||||||||||||||||||||
Sbjct: 91717 caccagcagcaccgcagcac 91698
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>dbj|AP004111.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1058_F07
          Length = 95841

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 209   caccagcagcaccgcagcac 228
             ||||||||||||||||||||
Sbjct: 28767 caccagcagcaccgcagcac 28786
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>dbj|AK112008.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E07, full
           insert sequence
          Length = 1190

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 142 agcgcctcctcgcggccgcc 161
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>dbj|AK112004.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-H02, full
           insert sequence
          Length = 1204

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 156 agcgcctcctcgcggccgcc 175
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>dbj|AK111709.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025I02, full
           insert sequence
          Length = 1389

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 141 agcgcctcctcgcggccgcc 160
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>dbj|AB100603.1| Mus musculus Notch1 gene for transmembrane receptor Notch1, complete
             cds
          Length = 60667

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   catgtccgcccccgcggcga 275
             ||||||||||||||||||||
Sbjct: 13457 catgtccgcccccgcggcga 13438
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>dbj|AK100203.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041B08, full
           insert sequence
          Length = 1901

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 300 agcgcctcctcgcggccgcc 319
           ||||||||||||||||||||
Sbjct: 141 agcgcctcctcgcggccgcc 160
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>dbj|AK062702.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-B03, full
           insert sequence
          Length = 715

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 373 ccgcgccggcgacgcgcagc 392
           ||||||||||||||||||||
Sbjct: 214 ccgcgccggcgacgcgcagc 195
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>gb|AC008369.1|AC008369 Drosophila melanogaster, chromosome 2R, region 52A4-52B4, P1 clones
              BACR48C01 and DS08592, complete sequence
          Length = 192366

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    tctgccgctgattcttctgctgct 200
              |||||||||| |||||||||||||
Sbjct: 115024 tctgccgctgtttcttctgctgct 115001
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>gb|AE003810.3| Drosophila melanogaster chromosome 2R, section 40 of 73 of the complete
              sequence
          Length = 271178

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    tctgccgctgattcttctgctgct 200
              |||||||||| |||||||||||||
Sbjct: 192382 tctgccgctgtttcttctgctgct 192359
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>dbj|D16536.1|CATCD8AC Felis catus mRNA for CD8 alpha-chain, complete cds
          Length = 785

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 422 ccaccactacgcccgcgccg 441
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>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 428     gaccccgacgacgccgaggc 447
               ||||||||||||||||||||
Sbjct: 1918025 gaccccgacgacgccgaggc 1918006
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 279    agggcgcggaggaggaggcc 298
              ||||||||||||||||||||
Sbjct: 604465 agggcgcggaggaggaggcc 604484
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>gb|AC145958.3| Gallus gallus BAC clone CH261-16J12 from chromosome unknown, complete
              sequence
          Length = 207441

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcttctgctgctcggcggag 208
              ||||||||||||||||||||
Sbjct: 201533 tcttctgctgctcggcggag 201514
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>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica
          Length = 4224103

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 431     cccgacgacgccgaggccgg 450
               ||||||||||||||||||||
Sbjct: 1921456 cccgacgacgccgaggccgg 1921475
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>emb|AL732541.11| Mouse DNA sequence from clone RP23-306D20 on chromosome 2, complete
             sequence
          Length = 213918

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   catgtccgcccccgcggcga 275
             ||||||||||||||||||||
Sbjct: 23123 catgtccgcccccgcggcga 23104
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>dbj|AB000485.1| Felis catus mRNA for CD8 alpha antigen, complete cds
          Length = 795

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 361 ccaccactacgcccgcgccg 380
           ||||||||||||||||||||
Sbjct: 432 ccaccactacgcccgcgccg 451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,574,713
Number of Sequences: 3902068
Number of extensions: 3574713
Number of successful extensions: 73976
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71251
Number of HSP's gapped (non-prelim): 2725
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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