Clone Information

BLAST Search Result

Clone Name	bastl45g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associ...	35	0.086
2	H1_MAIZE (P23444) Histone H1	34	0.15
3	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	33	0.25
4	SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)	32	0.56
5	NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurof...	32	0.73
6	ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein ...	32	0.95
7	ASH2L_MOUSE (Q91X20) Set1/Ash2 histone methyltransferase complex...	32	0.95
8	SP96_DICDI (P14328) Spore coat protein SP96	32	0.95
9	IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2	31	1.2
10	PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2....	31	1.2
11	FOXO4_MOUSE (Q9WVH3) Putative fork head domain transcription fac...	31	1.6
12	NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleo...	31	1.6
13	VGLC_VZVD (P09256) Glycoprotein GPV	31	1.6
14	GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (G...	31	1.6
15	XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG pr...	31	1.6
16	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	31	1.6
17	VGLC_VZVS (P10241) Glycoprotein GPV	30	2.1
18	MACF1_HUMAN (Q9UPN3) Microtubule-actin crosslinking factor 1, is...	30	2.1
19	MACF4_HUMAN (Q96PK2) Microtubule-actin crosslinking factor 1, is...	30	2.1
20	SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pr...	30	2.8
21	SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pr...	30	2.8
22	RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-F...	30	2.8
23	RDRP_SBMV (P21405) Probable RNA-directed RNA polymerase (EC 2.7....	30	2.8
24	RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis prote...	30	3.6
25	NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleopo...	30	3.6
26	IF2_GEOSL (Q74CT3) Translation initiation factor IF-2	30	3.6
27	UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains a...	30	3.6
28	CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96	29	4.7
29	LRC24_HUMAN (Q50LG9) Leucine-rich repeat-containing protein 24 p...	29	4.7
30	FALZ_HUMAN (Q12830) Fetal Alzheimer antigen (Fetal Alz-50-reacti...	29	4.7
31	PO6F1_RAT (P56223) POU domain, class 6, transcription factor 1 (...	29	4.7
32	ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adre...	29	4.7
33	B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3...	29	6.2
34	SSUD_RALSO (Q8XZQ6) Alkanesulfonate monooxygenase (EC 1.14.14.5)...	29	6.2
35	IF2_PSE14 (Q48E77) Translation initiation factor IF-2	29	6.2
36	IF2_PSEPF (Q3KI84) Translation initiation factor IF-2	29	6.2
37	VG50_ICHV1 (Q00130) Hypothetical gene 50 protein	29	6.2
38	VSX1_MOUSE (Q91V10) Visual system homeobox 1 (Transcription fact...	29	6.2
39	CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96	29	6.2
40	Y1383_MYCBO (P63392) Hypothetical ABC transporter ATP-binding pr...	29	6.2
41	Y1348_MYCTU (P63391) Hypothetical ABC transporter ATP-binding pr...	29	6.2
42	IF2_STIAU (P55875) Translation initiation factor IF-2	29	6.2
43	IE18_PRVKA (P33479) Immediate-early protein IE180	29	6.2
44	RS3_METAC (Q8TRU1) 30S ribosomal protein S3P	28	8.1
45	MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (...	28	8.1
46	MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Ac...	28	8.1
47	BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (...	28	8.1
48	FKBP4_CRYNE (Q5KIJ5) FK506-binding protein 4 (EC 5.2.1.8) (Pepti...	28	8.1
49	CDN1C_MOUSE (P49919) Cyclin-dependent kinase inhibitor 1C (Cycli...	28	8.1
50	ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein ...	28	8.1
51	SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal t...	28	8.1
52	NUPL1_DROME (Q9VDV3) Probable nucleoporin Nup58	28	8.1
53	SNTB2_HUMAN (Q13425) Beta-2-syntrophin (59 kDa dystrophin-associ...	28	8.1
54	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	28	8.1
55	YHL1_EBV (P03181) Hypothetical protein BHLF1	28	8.1
56	NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1	28	8.1
57	TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA)...	28	8.1

>SNTB2_MOUSE (Q61235) Beta-2-syntrophin (59 kDa dystrophin-associated protein|
           A1, basic component 2) (Syntrophin 3) (SNT3)
           (Syntrophin-like) (SNTL)
          Length = 520

 Score = 35.0 bits (79), Expect = 0.086
 Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -1

Query: 409 ISDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGP 230
           +++L+   L  T  AA  EP  PA A +      G E S P +   G  PP+      GP
Sbjct: 25  VAELSGESLSLTGDAAAVEPEPPAAAFNGLPNGGGGE-SLPGSPNRGLGPPSPPAPPRGP 83

Query: 229 AARLAGSAPRRRVE--EQEAPG 170
           A   + S P RRV   +QEA G
Sbjct: 84  AGEASASPPVRRVRVVKQEAGG 105

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>H1_MAIZE (P23444) Histone H1|
          Length = 245

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -1

Query: 382 PKTKLAAREEPH-EPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSA 206
           PK K  A+ +P  +P  A            + PK K   +  P   G +P P A+ AG A
Sbjct: 146 PKAKTPAKAKPATKPKPAAKPKAVVKPKTPAKPKAKPAAKAKPKTAGAKPKPLAKKAGRA 205

Query: 205 PRRRVEEQEAPG 170
              +   ++ PG
Sbjct: 206 KAAKTSAKDTPG 217



 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = -1

Query: 406 SDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKA 275
           +D+ ETP P    A       PA   + A A    +A+APK +A
Sbjct: 2   TDVTETPAPLVDAAPEAPADAPAAPAADANAAKAKKATAPKKRA 45

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>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 33.5 bits (75), Expect = 0.25
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
 Frame = -1

Query: 376 TKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPP--AVLGREPGPAARLAGSAP 203
           T  AA+  P  PA  G +A          PK  A G+ P   A  G  PGPA + A   P
Sbjct: 116 TTPAAQATPEAPARPGPAAARPSAPAPGQPKPPAPGQPPRPGATPGPRPGPAPKPAARTP 175

Query: 202 R 200
           R
Sbjct: 176 R 176

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>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)|
          Length = 303

 Score = 32.3 bits (72), Expect = 0.56
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 328 SSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRRRVEEQEAP 173
           S + +R    + +PK K+  R P     R PGP ++    +PRR      +P
Sbjct: 223 SRSRSRSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSP 274

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>NFH_RAT (P16884) Neurofilament triplet H protein (200 kDa neurofilament|
           protein) (Neurofilament heavy polypeptide) (NF-H)
          Length = 1072

 Score = 32.0 bits (71), Expect = 0.73
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAGSSATARFGVEASAP---KTKAEGRDP 260
           A +P  +TK   +EE   PA+A S A A+   EA +P   K+ AE + P
Sbjct: 499 AASPEKETKSPVKEEAKSPAEAKSPAEAKSPAEAKSPAEVKSPAEVKSP 547



 Score = 30.0 bits (66), Expect = 2.8
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
 Frame = -1

Query: 382  PKTKLAAREEPHEPADAGSSATARFGV--EASAPKTKAEGRDPPAVLGRE--PGPAARLA 215
            P+ K  A+EE   PAD  S    +     EA +P+ K E R       +E    P   + 
Sbjct: 828  PEAKTPAKEEAKRPADIRSPEQVKSPAKEEAKSPE-KEETRTEKVAPKKEEVKSPVEEVK 886

Query: 214  GSAPRRRVEEQEAP 173
               P ++VEE++ P
Sbjct: 887  AKEPPKKVEEEKTP 900

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>ZCHC2_HUMAN (Q9C0B9) Zinc finger CCHC domain-containing protein 2 (Fragment)|
          Length = 899

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 23/57 (40%), Positives = 30/57 (52%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPA 227
           A  PLP + LAA   P + +   S+A A     ASA  ++A+   PPAV    PGPA
Sbjct: 635 ASYPLPGSPLAAGVLPSQNSSVLSTA-ATSPQPASAGISQAQATVPPAVPTHTPGPA 690

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>ASH2L_MOUSE (Q91X20) Set1/Ash2 histone methyltransferase complex subunit ASH2|
           (ASH2-like protein)
          Length = 623

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +3

Query: 171 PGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSA 278
           PGA+ S+T     +   +AAG G  PS A G+ PS+
Sbjct: 18  PGAAASATTAEDRETEPVAAGAGEGPSAAPGAEPSS 53

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>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 25/89 (28%), Positives = 34/89 (38%)
 Frame = +3

Query: 180 SCSSTRRLGADPASLAAGPGSRPSTAGGSRPSAFVFGADASTPNRAVAEDPXXXXXXXXX 359
           S S +  LG+   S A+G  +  S+A GS        A +S  + A +  P         
Sbjct: 425 STSDSSALGSTSESSASGSSAVSSSASGSS------AASSSPSSSAASSSPSSSAASSSP 478

Query: 360 XXXNFVFGSGVSARSEMKRSSSVGSSAAP 446
                      SA S    SSS  SS+AP
Sbjct: 479 SSSAASSSPSSSASSSSSPSSSASSSSAP 507

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>IF2_AGRT5 (Q8UJ51) Translation initiation factor IF-2|
          Length = 913

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 162 SDHPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSAFVFGADASTPNRAV 320
           S+ P A+ +   R  A P S AA P S P+T   + P     G D      AV
Sbjct: 202 SERPAAAAAPAPRTDARPQSAAAAPRSAPATPDAAAPRGRRTGGDDEDDRGAV 254

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>PAK4_MOUSE (Q8BTW9) Serine/threonine-protein kinase PAK 4 (EC 2.7.11.1)|
           (p21-activated kinase 4) (PAK-4)
          Length = 593

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 25/62 (40%), Positives = 30/62 (48%), Gaps = 9/62 (14%)
 Frame = -1

Query: 364 AREEPHEPADAGSSATARFGVEASA---PKTKAEGRDPPAVLG---REP---GPAARLAG 212
           A+ EPH  A  G SAT     ++S+   P T+A G   P VLG    EP    PA  LA 
Sbjct: 220 AQGEPHTMAPNGPSATGLAAPQSSSSSRPPTRARGAPSPGVLGPHASEPQLAPPARALAA 279

Query: 211 SA 206
            A
Sbjct: 280 PA 281

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>FOXO4_MOUSE (Q9WVH3) Putative fork head domain transcription factor AFX1 (Afxh)|
           (Forkhead box protein O4)
          Length = 505

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 22/73 (30%), Positives = 31/73 (42%)
 Frame = -1

Query: 388 PLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGS 209
           PLP+  LA   EPHEP++   S   +   E  +       R P    G +PG    + G 
Sbjct: 34  PLPRPDLAT--EPHEPSEVEPSLGQKVPTEGHSEPILLPSRLPEPAGGPQPGILGAVTG- 90

Query: 208 APRRRVEEQEAPG 170
            PR+    + A G
Sbjct: 91  -PRKGGSRRNAWG 102

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>NU153_HUMAN (P49790) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1475

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/66 (28%), Positives = 31/66 (46%)
 Frame = +3

Query: 249  STAGGSRPSAFVFGADASTPNRAVAEDPXXXXXXXXXXXXNFVFGSGVSARSEMKRSSSV 428
            +++ G+  + FVFG  AS+ N   +               +FVFG+G SA S    S + 
Sbjct: 1263 TSSTGTAVTPFVFGPGASSNNTTTSGFGFGATTTSSSAGSSFVFGTGPSAPS---ASPAF 1319

Query: 429  GSSAAP 446
            G++  P
Sbjct: 1320 GANQTP 1325

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>VGLC_VZVD (P09256) Glycoprotein GPV|
          Length = 560

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
 Frame = -1

Query: 391 TPLPKTKL---AAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAV-----LGREP 236
           TP+  T+L   AA  +P +PA A +SA +R    A AP + A  +  PAV       R+P
Sbjct: 24  TPVSITELYTSAATRKP-DPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAASRKP 82

Query: 235 GPAARLAGSAPRR 197
            PA     +A R+
Sbjct: 83  DPAVAPTSAATRK 95

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>GRIP2_HUMAN (Q9C0E4) Glutamate receptor-interacting protein 2 (GRIP2 protein)|
          Length = 1043

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
 Frame = -1

Query: 346 EPADA--GSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRRRVEEQEAP 173
           +PADA  G    ARF     +  +  E  D  A  G   GP +    +A R    ++  P
Sbjct: 759 DPADALKGGLPAARFSPAVPSVDSAVESWDSSATEGGFGGPGSYTPQAAARGTTPQERRP 818

Query: 172 GW 167
           GW
Sbjct: 819 GW 820

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>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 29/75 (38%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
 Frame = -1

Query: 394 ETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDP-PAVLGREPGPAARL 218
           E P P     A  E   PA+  + A A   VEA AP   AEG  P PA    E    A  
Sbjct: 137 EAPAPAP---AEGEAPAPAEGEAPAPAPAEVEAPAP-APAEGEAPAPAPAEGEAPAPAPA 192

Query: 217 AGSAPRRRVEEQEAP 173
            G AP     E EAP
Sbjct: 193 EGEAPAPAPAEGEAP 207

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/76 (31%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAG-SSATARFGVEASAPKTKAEGRDPPAVLGREPGPAAR 221
           A  P    K A R     PA AG S A    G  A+AP+  A  + P A     P   A 
Sbjct: 60  AGRPAAPKKAAPRPSAPSPAQAGPSQAAPAAGDRAAAPRPSAAPKAPAAQQPAAPSAPAP 119

Query: 220 LAGSAPRRRVEEQEAP 173
                PR     + AP
Sbjct: 120 APSQGPRPTPGPKPAP 135

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>VGLC_VZVS (P10241) Glycoprotein GPV|
          Length = 591

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
 Frame = -1

Query: 391 TPLPKTKL---AAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAV-----LGREP 236
           TP+  T+L   AA  +P +PA A +SA +R    A AP + A  +  PAV       R+P
Sbjct: 55  TPVSITELYTSAATRKP-DPAVAPTSAASRKPDPAVAPTSAATRKPDPAVAPTSAASRKP 113

Query: 235 GPAARLAGSAPRR 197
            PA     +A R+
Sbjct: 114 DPAVAPTSAASRK 126



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -1

Query: 367 AAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAV-----LGREPGPAARLAGSAP 203
           AA  +P +PA A +SA  R    A AP + A  +  PAV       R+P PA     +A 
Sbjct: 80  AASRKP-DPAVAPTSAATRKPDPAVAPTSAASRKPDPAVAPTSAASRKPDPAVAPTSAAT 138

Query: 202 RR 197
           R+
Sbjct: 139 RK 140

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>MACF1_HUMAN (Q9UPN3) Microtubule-actin crosslinking factor 1, isoforms 1/2/3/5|
            (Actin cross-linking family protein 7) (Macrophin-1)
            (Trabeculin-alpha) (620 kDa actin-binding protein)
            (ABP620)
          Length = 5430

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = +3

Query: 162  SDHPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSAFVFGADAS 302
            S  P ++ + T R  ADP   A+ PGSR  +  GSR S+   G+DAS
Sbjct: 5332 SSSPASTGAKTNR--ADPKKSASRPGSRAGSRAGSRASS-RRGSDAS 5375

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>MACF4_HUMAN (Q96PK2) Microtubule-actin crosslinking factor 1, isoform 4|
          Length = 5938

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = +3

Query: 162  SDHPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSAFVFGADAS 302
            S  P ++ + T R  ADP   A+ PGSR  +  GSR S+   G+DAS
Sbjct: 5840 SSSPASTGAKTNR--ADPKKSASRPGSRAGSRAGSRASS-RRGSDAS 5883

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>SFRS3_MOUSE (P84104) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20) (X16 protein)
          Length = 164

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -1

Query: 358 EEPHEPADA------GSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRR 197
           E+P + ADA       +    R  VE S  + ++  R PP   GR P    R     PRR
Sbjct: 54  EDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113

Query: 196 R 194
           R
Sbjct: 114 R 114

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>SFRS3_HUMAN (P84103) Splicing factor, arginine/serine-rich 3 (Pre-mRNA-splicing|
           factor SRP20)
          Length = 164

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
 Frame = -1

Query: 358 EEPHEPADA------GSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRR 197
           E+P + ADA       +    R  VE S  + ++  R PP   GR P    R     PRR
Sbjct: 54  EDPRDAADAVRELDGRTLCGCRVRVELSNGEKRSRNRGPPPSWGRRPRDDYRRRSPPPRR 113

Query: 196 R 194
           R
Sbjct: 114 R 114

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>RFIP3_HUMAN (O75154) Rab11 family-interacting protein 3 (Rab11-FIP3) (EF|
           hands-containing Rab-interacting protein) (Eferin)
          Length = 756

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 20/96 (20%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLG--------- 245
           +E P P  +    + P     A   A  R G     P  ++ G D PA            
Sbjct: 12  SEPPGPDPEPGGPDGPGAAQLAPGPAELRLGAPVGGPDPQSPGLDEPAPGAAADGGARWS 71

Query: 244 -----------REPGPAARLAGSAPRRRVEEQEAPG 170
                      R+PGP+A    S PR ++   +APG
Sbjct: 72  AGPAPGLEGGPRDPGPSAPPPRSGPRGQLASPDAPG 107

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>RDRP_SBMV (P21405) Probable RNA-directed RNA polymerase (EC 2.7.7.48)|
          Length = 956

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -1

Query: 322 ATARFGVEASAPKTKAEGRDPPAVLGREPGP----AARLAGSAPRRRVEEQEAPG 170
           AT+   +  S+P T   GR P  V G+E GP    +++L+    RRR  E+ +PG
Sbjct: 508 ATSSKPITTSSPGTP--GRSPLPVSGKELGPSTQSSSKLSRKQRRRRSTEKASPG 560

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>RIMS1_RAT (Q9JIR4) Regulating synaptic membrane exocytosis protein 1|
           (Rab3-interacting molecule 1) (RIM 1)
          Length = 1615

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 22/71 (30%), Positives = 28/71 (39%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARL 218
           ++  LP T+ AA       A   + ATAR     S P+ +A    PP   G  P   A  
Sbjct: 413 SDVALPHTEAAAAAPAEATAGKRAPATARVSPPES-PRARAAAAQPPTEHGPPPPRPAPG 471

Query: 217 AGSAPRRRVEE 185
               P  RV E
Sbjct: 472 PAEPPEPRVPE 482

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>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)|
            (153 kDa nucleoporin)
          Length = 1468

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 22/71 (30%), Positives = 31/71 (43%)
 Frame = +3

Query: 234  PGSRPSTAGGSRPSAFVFGADASTPNRAVAEDPXXXXXXXXXXXXNFVFGSGVSARSEMK 413
            P +  STA  + P  FVFG  AS+ +   +                FVFG+G SA S   
Sbjct: 1253 PATTSSTASAAPP--FVFGTGASSNSTVSSGFTFGATTTSSSSGSFFVFGTGHSAPS--- 1307

Query: 414  RSSSVGSSAAP 446
             S + G++  P
Sbjct: 1308 ASPAFGANQTP 1318

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>IF2_GEOSL (Q74CT3) Translation initiation factor IF-2|
          Length = 883

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 397 AETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGR-DPPAVLGREPGPAAR 221
           AE P+      A E P       + A      + +A K +  GR + P +    P PA R
Sbjct: 127 AEEPVAAAVKPASEPPVVQKAPVAPAAPPVDDKPTANKARILGRVELPGITTPAPKPADR 186

Query: 220 LAGSAPRRRVEEQ 182
              +AP++R+EE+
Sbjct: 187 REATAPKKRIEER 199

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>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
           repeats protein (Nucling) (Nuclear membrane-binding
           protein)
          Length = 1411

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -1

Query: 448 NGAALDPTEELLFISDL-AETPLPKTKLAAREEPHE 344
           NG  L   EE++   DL +E   PK+ LAA+E+ HE
Sbjct: 330 NGLQLQLNEEVMVADDLESEREKPKSLLAAKEKQHE 365

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>CCD96_HUMAN (Q2M329) Coiled-coil domain-containing protein 96|
          Length = 555

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/60 (31%), Positives = 27/60 (45%)
 Frame = -1

Query: 355 EPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRRRVEEQEA 176
           EP EPA+ G+   A+    A   + +AE          E G   R   S P  R++E+EA
Sbjct: 96  EPEEPAEVGAEEPAQPEPGAGPEELEAEAGAEELEQAAE-GKEVRFQASLPLTRIDEEEA 154

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>LRC24_HUMAN (Q50LG9) Leucine-rich repeat-containing protein 24 precursor|
          Length = 513

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 25/81 (30%), Positives = 37/81 (45%)
 Frame = -1

Query: 442 AALDPTEELLFISDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRD 263
           +A D    +LF+S++       T   A +   E ++AG +A   F +  +A       R 
Sbjct: 321 SASDTGSGMLFLSNI-------TLAHAGKYECEASNAGGAARVPFRLLVNA------SRQ 367

Query: 262 PPAVLGREPGPAARLAGSAPR 200
            P    + P PAAR AGS PR
Sbjct: 368 QPQQPAQPPPPAARPAGSEPR 388

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>FALZ_HUMAN (Q12830) Fetal Alzheimer antigen (Fetal Alz-50-reactive clone 1)|
          Length = 810

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = -1

Query: 394 ETPLPKTKLAAREEPHEPADAGSSATARFG---VEASAPKTK-AEGRDPPAVLGREP 236
           +TP    +    EEP E  D G+S +A  G     A++ +T  +EGR P   L   P
Sbjct: 470 KTPDDDPEQGKSEEPTEVGDKGNSVSANLGDNTTNATSEETSPSEGRSPVGCLSETP 526

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>PO6F1_RAT (P56223) POU domain, class 6, transcription factor 1|
           (Brain-specific homeobox/POU domain protein 5) (Brain-5)
           (Brn-5 protein)
          Length = 301

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 21/69 (30%), Positives = 29/69 (42%)
 Frame = -1

Query: 409 ISDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGP 230
           I+ LA +PLP+    A  +P  P     S         + P        PPAV+   P P
Sbjct: 56  IATLASSPLPQP--VAVRKPSTPESPAKSEVQPIQPTQAVP--------PPAVILTSPAP 105

Query: 229 AARLAGSAP 203
           A + + SAP
Sbjct: 106 ALKPSASAP 114

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>ADA2B_BOVIN (O77700) Alpha-2B adrenergic receptor (Alpha-2B adrenoceptor)|
           (Alpha-2B adrenoreceptor) (Fragment)
          Length = 392

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
 Frame = -1

Query: 409 ISDLAETPLPKTKLAAREEPH-----EPADAGSSATARFGVEASAPKTKAEGRDPPAVLG 245
           +SD A+ P   ++LA   E +      P + G   T        AP T A     PA+  
Sbjct: 215 VSDSAKLPTLASQLATPGEANGCSQPRPGEKGDGETPE------APGTPALPPSWPAIPK 268

Query: 244 REPGPAARLAGSAPRRRVEEQEAPG 170
              G    + GS+P    EE+E  G
Sbjct: 269 SGQGQKEGVCGSSPEEEAEEEEEEG 293

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>B3A2_RAT (P23347) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1234

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)
 Frame = -1

Query: 307 GVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRR-----------RVEEQEAPGWSE 161
           GV     +  A+G    A  GREPGP  R    AP +           ++++ + P W E
Sbjct: 280 GVRRHLVRKNAKGSTQAAREGREPGPTPRARPRAPHKPHEVFVELNELQLDKNQEPQWRE 339

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>SSUD_RALSO (Q8XZQ6) Alkanesulfonate monooxygenase (EC 1.14.14.5)|
           (FMNH2-dependent aliphatic sulfonate monooxygenase)
          Length = 387

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 23/79 (29%), Positives = 30/79 (37%)
 Frame = -1

Query: 451 HNGAALDPTEELLFISDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAE 272
           H GAALD T   L +   A    P       + PH P   G S+ A   + A    T   
Sbjct: 145 HEGAALDYTGRHLSVKG-ARVLFPPV-----QRPHPPVYFGGSSEAAHALAAEQVDTYLT 198

Query: 271 GRDPPAVLGREPGPAARLA 215
             +PPA +  +     R A
Sbjct: 199 WGEPPAAVAEKIADVRRRA 217

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>IF2_PSE14 (Q48E77) Translation initiation factor IF-2|
          Length = 843

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 8/73 (10%)
 Frame = -1

Query: 367 AAREEPHEPADAGSSATAR----FGVEASAPKTKAEGRDP----PAVLGREPGPAARLAG 212
           AAR++  E A   +   AR     G  ASAP       +P    PA     P PA+  A 
Sbjct: 117 AARQKAEEEAKRRAEEDARNQPAAGQPASAPAQPVAAAEPVREAPAPAAAAPAPAS-AAP 175

Query: 211 SAPRRRVEEQEAP 173
           SA  R+ +EQ  P
Sbjct: 176 SADARKRDEQRRP 188

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>IF2_PSEPF (Q3KI84) Translation initiation factor IF-2|
          Length = 837

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -1

Query: 367 AAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLG---REPGPAARLAGSAPRR 197
           AAR++  E A   +   AR   + +AP   AE    PA +    RE  P    A +A  R
Sbjct: 117 AARQKAEEEARVRAEEEARR--QPAAPSAPAEAVAAPAPVAEPVREAAPVVAAAPAADTR 174

Query: 196 RVEEQEAP 173
           + +EQ  P
Sbjct: 175 KRDEQRRP 182

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>VG50_ICHV1 (Q00130) Hypothetical gene 50 protein|
          Length = 670

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
 Frame = +3

Query: 162 SDHPGASCSSTRRLGADPASLAAGPGSRPSTAG---------GSRPSAFVFGADASTPNR 314
           SD PG + + T+ +  +P+SL   P + PS A          G+RP   + G   + PN 
Sbjct: 58  SDFPGDAVTGTQPVPREPSSL---PRTTPSLAHTTISKMISLGTRPRPTIPGVPTTIPNT 114

Query: 315 AVAEDP 332
               DP
Sbjct: 115 DAPVDP 120

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>VSX1_MOUSE (Q91V10) Visual system homeobox 1 (Transcription factor VSX1)|
           (Retinal inner nuclear layer homeobox protein)
           (Homeodomain protein RINX)
          Length = 363

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -1

Query: 289 PKTKAEGRDPPAVLGREPGPAARLAGSAPRR 197
           P  ++   DP   +G  PGP   L GS P R
Sbjct: 49  PGLRSNSGDPAEAIGSGPGPGPGLCGSCPAR 79

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>CCD96_MACFA (Q95LS7) Coiled-coil domain-containing protein 96|
          Length = 560

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -1

Query: 355 EPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRRRVEEQEA 176
           EP EPA+AG+    +    A   +  AE R        E G   R   S P  R+ E+EA
Sbjct: 101 EPEEPAEAGAEEPVQPKSGAGPEELDAEARAEELEQAAE-GKEVRSQASLPLTRIGEEEA 159

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>Y1383_MYCBO (P63392) Hypothetical ABC transporter ATP-binding protein Mb1383|
          Length = 859

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 394 ETPLPKTKLAAREEPHEPADAGSSATARF 308
           +  L +T+LA RE P EP D  + AT  F
Sbjct: 584 QVTLDETELAVREHPREPLDGEAPATVVF 612

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>Y1348_MYCTU (P63391) Hypothetical ABC transporter ATP-binding protein|
           Rv1348/MT1390
          Length = 859

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 394 ETPLPKTKLAAREEPHEPADAGSSATARF 308
           +  L +T+LA RE P EP D  + AT  F
Sbjct: 584 QVTLDETELAVREHPREPLDGEAPATVVF 612

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>IF2_STIAU (P55875) Translation initiation factor IF-2|
          Length = 1054

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = -1

Query: 364 AREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREP-GPAARLAGSAPRRRVE 188
           A +EP + A   SS  +    EAS  +  A  R P A   +EP   A R A S P     
Sbjct: 90  ASQEPSQAASDVSSPPSEPVHEASGAEAAASERVPEAAAVQEPVAEAPRAAASEPAAEAP 149

Query: 187 EQEAP 173
           +  AP
Sbjct: 150 KATAP 154

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 171 PGASCSSTRRLG-ADPASLAAGPGSRPSTAGGSRPSA 278
           P A  ++  R G A PAS AAGP S P   GG  PSA
Sbjct: 216 PAAVAAAPARRGPASPASPAAGPVSAP--GGGGAPSA 250

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>RS3_METAC (Q8TRU1) 30S ribosomal protein S3P|
          Length = 318

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = -1

Query: 373 KLAAREEPHEPADAGSSATARFGVE-ASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRR 197
           K+    E  EPA+  +   A    E A+APK +A     PA     P PA      AP  
Sbjct: 194 KVRESVEVEEPAEKPAEKPAEKPAEKAAAPKKEAAKARAPAPAPEAPAPAPEAPAPAP-- 251

Query: 196 RVEEQE 179
            VEE E
Sbjct: 252 -VEEAE 256

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>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 863

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 7/64 (10%)
 Frame = -1

Query: 358 EEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAG-------SAPR 200
           E+  +    G S++A  G EA  PK   E R       R PG    LA         APR
Sbjct: 247 EDAKDVPGGGPSSSAPAGAEADGPKASPEARPQIPTKPRVPGKLQELASPPAGRPTPAPR 306

Query: 199 RRVE 188
           +  E
Sbjct: 307 KASE 310

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>MACF1_MOUSE (Q9QXZ0) Microtubule-actin crosslinking factor 1 (Actin cross-linking|
            family 7)
          Length = 5327

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = +3

Query: 162  SDHPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSAFVFGADAS 302
            S  P ++ +   R  ADP   A+ PGSR  +  GSR S+   G+DAS
Sbjct: 5229 SSSPASTGAKANR--ADPKKSASRPGSRAGSRAGSRASS-RRGSDAS 5272

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>BASP_RAT (Q05175) Brain acid soluble protein 1 (BASP1 protein) (Neuronal|
           axonal membrane protein NAP-22) (22 kDa neuronal
           tissue-enriched acidic protein)
          Length = 219

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
 Frame = -1

Query: 379 KTKLAAREEPHEPADAGSSATARFGVEASA----PKTKAEGRDPPAVLGREPGPAARLAG 212
           + K +A E+P + AD  + A  +   +A+A    PK + E  +  A    EP PA     
Sbjct: 49  EVKESAEEKPKDAADGEAKAEEKEADKAAAKEEAPKAEPEKSEGAAEEQPEPAPAPEQEA 108

Query: 211 SAP 203
           +AP
Sbjct: 109 AAP 111

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>FKBP4_CRYNE (Q5KIJ5) FK506-binding protein 4 (EC 5.2.1.8) (Peptidyl-prolyl|
           cis-trans isomerase) (PPIase) (Rotamase)
          Length = 405

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 22/103 (21%)
 Frame = -1

Query: 436 LDPTEELLF--ISDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAP-------- 287
           LD  EE     I+++ + P PKTK A      +P      A  R   E  +P        
Sbjct: 195 LDSEEEAAVAKITEIPDEPTPKTKKALPAADKKPVPEAKPAQKRKAEELESPAKEDAALS 254

Query: 286 ---------KTKAEG---RDPPAVLGREPGPAARLAGSAPRRR 194
                    K K EG    + PA       PA +    AP+++
Sbjct: 255 KAQKKKLAKKAKVEGEKAEEKPAAAAVAEKPATKKEAKAPQKK 297

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>CDN1C_MOUSE (P49919) Cyclin-dependent kinase inhibitor 1C (Cyclin-dependent|
           kinase inhibitor p57) (p57KIP2)
          Length = 348

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
 Frame = -1

Query: 406 SDLAETPLPKTKLAAREEPHEP--ADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPG 233
           SDL   P+P+  L A  +P      DA      R G E    +   +G +  A  G E G
Sbjct: 161 SDLTSDPIPEVTLVATSDPTPDPIPDANPDVATRDGEEQVPEQVSEQGEESGAEPGDELG 220

Query: 232 --PAARLAGSAPRRRVEEQE 179
             P +          VEE++
Sbjct: 221 TEPVSEQGEEQGAEPVEEKD 240

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>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding|
            factor) (AT-binding transcription factor 1)
          Length = 3726

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -1

Query: 448  NGAALDPTEELLFISDLAETPLPKTKLAAREEPHEPADAG-SSATARFGVEASAPKTKAE 272
            N A   P   L+    L  T +P   L     P++P+ A  SS T      A AP+   +
Sbjct: 3149 NTALTSPKPNLM---GLPSTTVPSPGLPTSGLPNKPSSASLSSPTPAQATMAMAPQPPPQ 3205

Query: 271  GRDPPAVLGREPGPAARLAGSAPRRRVEEQ 182
             + P   + + P P A     AP+   ++Q
Sbjct: 3206 PQQPQPPVQQPPPPPAAQQIPAPQLTPQQQ 3235

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>SAM68_MOUSE (Q60749) KH domain-containing, RNA-binding, signal|
           transduction-associated protein 1 (p21 Ras
           GTPase-activating protein-associated p62)
           (GAP-associated tyrosine phosphoprotein p62)
           (Src-associated in mitosis 68 kDa protein) (Sam68) (p68)
          Length = 443

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 352 PHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAP 203
           PH P   G     R G  AS P T+     PP +    PGP A + GSAP
Sbjct: 41  PHRPRGGGGGP--RGGARAS-PATQP----PPLLPPSTPGPDATVVGSAP 83

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>NUPL1_DROME (Q9VDV3) Probable nucleoporin Nup58|
          Length = 546

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 180 SCSSTRRLGADPA--SLAAGPGSRPSTAGGSRPSAFVFGADASTP 308
           + +ST   GA PA  SL A P + P  A G+  +   FGA ASTP
Sbjct: 38  AATSTPTFGAAPATTSLFAAPAATP--AFGAPAATPAFGAPASTP 80

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>SNTB2_HUMAN (Q13425) Beta-2-syntrophin (59 kDa dystrophin-associated protein|
           A1, basic component 2) (Syntrophin 3) (SNT3)
           (Syntrophin-like) (SNTL)
          Length = 540

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -1

Query: 307 GVEASAPKTKAEGRDPPAVLGREPGPAARLAGSAPRRRVE--EQEAPG 170
           G   S P + + G  PP+      GPA     S P RRV   +QEA G
Sbjct: 78  GAGDSLPGSPSRGLGPPSPPAPPRGPAGEAGASPPVRRVRVVKQEAGG 125

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 24/81 (29%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
 Frame = -1

Query: 388 PLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPAARLAGS 209
           P P+T   A   P  PA+     TAR       P  K      PA       PAA+ A  
Sbjct: 82  PGPRTPAPAASAPQAPAEQ----TARPTDARPGPAVKPGPAPTPARPAAPEAPAAKAAPE 137

Query: 208 APRRRV--------EEQEAPG 170
           AP +R         ++Q+ PG
Sbjct: 138 APAQRPTPGGPRPGQQQQRPG 158

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>YHL1_EBV (P03181) Hypothetical protein BHLF1|
          Length = 660

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 168 HPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSA 278
           +PG   +  RR GA       G G RPS   G RP+A
Sbjct: 527 NPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAA 563



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 168 HPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSA 278
           +PG   +  RR GA       G G RPS   G RP+A
Sbjct: 402 NPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAA 438



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 168 HPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSA 278
           +PG   +  RR GA       G G RPS   G RP+A
Sbjct: 277 NPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAA 313



 Score = 28.5 bits (62), Expect = 8.1
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 168 HPGASCSSTRRLGADPASLAAGPGSRPSTAGGSRPSA 278
           +PG   +  RR GA       G G RPS   G RP+A
Sbjct: 152 NPGCPRTWRRRSGAQRGHPPPGAGQRPSGPTGGRPAA 188

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>NKX61_MESAU (Q60554) Homeobox protein Nkx-6.1|
          Length = 364

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 13/73 (17%)
 Frame = -1

Query: 340 ADAGSSATARFGVEASAPKTKAEGRDPP-------------AVLGREPGPAARLAGSAPR 200
           A A ++A++  G+ A  P+  +    PP             A +GR P P A L G AP 
Sbjct: 144 AAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRAPI 203

Query: 199 RRVEEQEAPGWSE 161
                 ++P W +
Sbjct: 204 FWPGVMQSPPWRD 216

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>TCNA_TRYCR (P23253) Sialidase (EC 3.2.1.18) (Neuraminidase) (NA) (Major surface|
            antigen)
          Length = 1162

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 22/73 (30%), Positives = 30/73 (41%)
 Frame = -1

Query: 406  SDLAETPLPKTKLAAREEPHEPADAGSSATARFGVEASAPKTKAEGRDPPAVLGREPGPA 227
            S    TP      +A   P  PAD+ + +T    V++SA  T +   D  A  G    PA
Sbjct: 990  SSAHSTPSTPADSSAHSTPSTPADSSAHSTPSTPVDSSAHSTPSTPADSSA-HGTPSTPA 1048

Query: 226  ARLAGSAPRRRVE 188
               A S P   V+
Sbjct: 1049 DSSAHSTPSTPVD 1061


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,584,426
Number of Sequences: 219361
Number of extensions: 608129
Number of successful extensions: 3607
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 3206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3590
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result