ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45g02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 76 ccgcctccgccccattccccaccattcccgccgcc 110 ||||||||||||||||||||||||| ||||||||| Sbjct: 9463998 ccgcctccgccccattccccaccatccccgccgcc 9464032
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 76 ccgcctccgccccattccccaccattcccgccgcc 110 ||||||||||||||||||||||||| ||||||||| Sbjct: 134325 ccgcctccgccccattccccaccatccccgccgcc 134359
>gb|AC108502.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1378_A04, complete sequence Length = 103458 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gccgccctccgccgcacgcgc 24 ||||||||||||||||||||| Sbjct: 77057 gccgccctccgccgcacgcgc 77077
>gb|AC105769.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1301_G07, complete sequence Length = 106166 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gccgccctccgccgcacgcgc 24 ||||||||||||||||||||| Sbjct: 40544 gccgccctccgccgcacgcgc 40564
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 296 cgcctcgacgccgaaccgcgc 316 ||||||||||||||||||||| Sbjct: 1277015 cgcctcgacgccgaaccgcgc 1276995
>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16 Length = 349737 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 300 tcgacgccgaaccgcgccgta 320 ||||||||||||||||||||| Sbjct: 83606 tcgacgccgaaccgcgccgta 83586
>gb|AF283321.1|AF283320S2 Homo sapiens low density lipoprotein receptor-related protein 5 (LRP5) gene, exons 10 through 23 and complete cds Length = 64475 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 tcgcccgcccgcggcgccaggccgc 151 |||||||||||| |||||||||||| Sbjct: 56554 tcgcccgcccgccgcgccaggccgc 56530
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ggccgcgggtcgcccgcccgc 138 ||||||||||||||||||||| Sbjct: 5759321 ggccgcgggtcgcccgcccgc 5759301
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gccgccctccgccgcacgcgc 24 ||||||||||||||||||||| Sbjct: 21061679 gccgccctccgccgcacgcgc 21061699 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cgctctcctctcccgtgccg 41 |||||||||||||||||||| Sbjct: 24631582 cgctctcctctcccgtgccg 24631563
>emb|AL731620.2|OSJN00270 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0003A12, complete sequence Length = 164425 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ggccgcgggtcgcccgcccgc 138 ||||||||||||||||||||| Sbjct: 54307 ggccgcgggtcgcccgcccgc 54287
>emb|AL731580.3|OSJN00227 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0001M07, complete sequence Length = 114335 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 118 ggccgcgggtcgcccgcccgc 138 ||||||||||||||||||||| Sbjct: 103126 ggccgcgggtcgcccgcccgc 103106
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 61 cgcccgatccgcacgccgcct 81 ||||||||||||||||||||| Sbjct: 4395106 cgcccgatccgcacgccgcct 4395086
>dbj|AK072834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023139M04, full insert sequence Length = 843 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 4 gccgccctccgccgcacgcgc 24 ||||||||||||||||||||| Sbjct: 62 gccgccctccgccgcacgcgc 82
>dbj|AP002366.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-142N13, complete sequence Length = 198720 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 tcgcccgcccgcggcgccaggccgc 151 |||||||||||| |||||||||||| Sbjct: 192518 tcgcccgcccgccgcgccaggccgc 192494
>dbj|AP000807.4| Homo sapiens genomic DNA, chromosome 11, clone:RP11-715N9, complete sequence Length = 204439 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 127 tcgcccgcccgcggcgccaggccgc 151 |||||||||||| |||||||||||| Sbjct: 139612 tcgcccgcccgccgcgccaggccgc 139588
>gb|AY320035.2| Bacteriophage VWB, complete genome Length = 49220 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 290 cgcggacgcctcgacgccga 309 |||||||||||||||||||| Sbjct: 37972 cgcggacgcctcgacgccga 37991
>gb|AC130597.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017K09, complete sequence Length = 155525 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cgctctcctctcccgtgccg 41 |||||||||||||||||||| Sbjct: 145758 cgctctcctctcccgtgccg 145739
>gb|AC135917.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048K05, complete sequence Length = 104254 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 22 cgctctcctctcccgtgccg 41 |||||||||||||||||||| Sbjct: 17919 cgctctcctctcccgtgccg 17900
>gb|AC133291.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0542B04, complete sequence Length = 182823 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cgccgcctccgccccattccccac 97 |||||||||| ||||||||||||| Sbjct: 54182 cgccgcctcctccccattccccac 54205
>gb|AC009127.10| Homo sapiens chromosome 16 clone RP11-498D10, complete sequence Length = 173128 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tacccggcgcctcggcgctg 210 |||||||||||||||||||| Sbjct: 128479 tacccggcgcctcggcgctg 128460
>ref|XM_810525.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053504021.120) partial mRNA Length = 2184 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 cccattccccaccattcccgccgc 109 |||||||| ||||||||||||||| Sbjct: 780 cccattccacaccattcccgccgc 757
>ref|XM_811563.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053507677.30) partial mRNA Length = 2184 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 86 cccattccccaccattcccgccgc 109 |||||||| ||||||||||||||| Sbjct: 780 cccattccacaccattcccgccgc 757
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 gcctcgctgcgggccctggc 239 |||||||||||||||||||| Sbjct: 449175 gcctcgctgcgggccctggc 449194
>emb|AL022316.2|HS126B4 Human DNA sequence from clone CTA-126B4 on chromosome 22q13.2-13.31, complete sequence Length = 156212 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 171 cccggggcctcctgctcctc 190 |||||||||||||||||||| Sbjct: 43537 cccggggcctcctgctcctc 43556
>emb|Z75077.1|TBMCRECEP T.belangeri mRNA for mineralocorticoid receptor Length = 3647 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cctcggttggatccagtgct 440 |||||||||||||||||||| Sbjct: 1398 cctcggttggatccagtgct 1417
>emb|X83607.1|TBMCR T.belangeri mRNA for mineralocorticoid receptor Length = 1107 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 421 cctcggttggatccagtgct 440 |||||||||||||||||||| Sbjct: 850 cctcggttggatccagtgct 869
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 279 ttcgtcttcggcgcggacgcctcg 302 |||||| ||||||||||||||||| Sbjct: 967782 ttcgtcatcggcgcggacgcctcg 967805
>gb|AC009121.8| Homo sapiens chromosome 16 clone RP11-485G7, complete sequence Length = 131487 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 tctcccgtgccgcccacccc 49 |||||||||||||||||||| Sbjct: 36700 tctcccgtgccgcccacccc 36719
>gb|AC009800.13| Homo sapiens chromosome 8, clone RP11-182E14, complete sequence Length = 167249 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 130 cccgcccgcggcgccaggcc 149 |||||||||||||||||||| Sbjct: 78223 cccgcccgcggcgccaggcc 78204
>gb|AC087348.6| Homo sapiens chromosome 8, clone RP11-333H13, complete sequence Length = 173380 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cccgcccgcggcgccaggcc 149 |||||||||||||||||||| Sbjct: 32002 cccgcccgcggcgccaggcc 32021
>gb|AC144536.4| Homo sapiens 3 BAC RP11-213K17 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152224 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 ccgccgccacccacaggccgcggg 126 |||||||||||||| ||||||||| Sbjct: 32913 ccgccgccacccacgggccgcggg 32890
>gb|AE005739.1| Caulobacter crescentus CB15 section 65 of 359 of the complete genome Length = 10317 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 cgcccgcccgcggcgccaggccgc 151 |||||||||||| ||||||||||| Sbjct: 7254 cgcccgcccgcgtcgccaggccgc 7277
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 271 cctcggccttcgtcttcggcgcgg 294 |||||||||||| ||||||||||| Sbjct: 4684149 cctcggccttcgacttcggcgcgg 4684172
>gb|AC009116.8| Homo sapiens chromosome 16 clone RP11-477D3, complete sequence Length = 172533 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tccgccccattccccaccattccc 104 ||||||||||| |||||||||||| Sbjct: 11746 tccgccccatttcccaccattccc 11769
>tpg|BK000051.1| TPA: TPA_exp: Caulobacter crescentus WbqL, hypothetical protein (CC0632), conserved hypothetical protein (CC0633), ABC transporter (wzm), and ABC-2 type transporter (wzt) genes, complete cds Length = 6400 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 128 cgcccgcccgcggcgccaggccgc 151 |||||||||||| ||||||||||| Sbjct: 4254 cgcccgcccgcgtcgccaggccgc 4277
>gb|AF165881.1|AF165881 Pseudomonas aeruginosa catabolic alanine racemase DadX (dadX) gene, complete cds Length = 1092 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 231 ggccctggctcgcggccgag 250 |||||||||||||||||||| Sbjct: 550 ggccctggctcgcggccgag 531
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cgccgcctccgccccattccccac 97 |||||||||| ||||||||||||| Sbjct: 20235875 cgccgcctcctccccattccccac 20235898
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 cggcgtcggcgggctcatgg 350 |||||||||||||||||||| Sbjct: 6021725 cggcgtcggcgggctcatgg 6021706
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 194 ccggcgcctcggcgctgatc 213 |||||||||||||||||||| Sbjct: 4022030 ccggcgcctcggcgctgatc 4022011
>dbj|AP005425.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0644A02 Length = 144954 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 cggcgtcggcgggctcatgg 350 |||||||||||||||||||| Sbjct: 26224 cggcgtcggcgggctcatgg 26205
>dbj|AP006309.1| Homo sapiens genomic DNA, chromosome 3 clone:RP11-39I4, complete sequence Length = 168211 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ccgccgccacccacaggccgcggg 126 |||||||||||||| ||||||||| Sbjct: 10343 ccgccgccacccacgggccgcggg 10366
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 cccgtgccgcccaccccgat 52 |||||||||||||||||||| Sbjct: 1535472 cccgtgccgcccaccccgat 1535491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 cgccgcctccgccccattccccac 97 |||||||||| ||||||||||||| Sbjct: 20519909 cgccgcctcctccccattccccac 20519932
>gb|AC092145.2| Homo sapiens chromosome 16 clone RP11-61F12, complete sequence Length = 113176 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 tccgccccattccccaccattccc 104 ||||||||||| |||||||||||| Sbjct: 104514 tccgccccatttcccaccattccc 104537
>dbj|AP000497.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:301 to 308, anti-oncogene region, section 5/5 Length = 146596 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 ccgccgccacccacaggccgcggg 126 |||||||||||||| ||||||||| Sbjct: 104712 ccgccgccacccacgggccgcggg 104735 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,234,176 Number of Sequences: 3902068 Number of extensions: 3234176 Number of successful extensions: 78702 Number of sequences better than 10.0: 46 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77403 Number of HSP's gapped (non-prelim): 1299 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
