ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl45f10 |
|---|---|
| Clone Library Name | barley_pub |
>RS1_STAAW (Q8NWM8) 30S ribosomal protein S1| Length = 391 Score = 36.2 bits (82), Expect = 0.019 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_STAAS (Q6G987) 30S ribosomal protein S1| Length = 391 Score = 36.2 bits (82), Expect = 0.019 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_STAAN (Q7A5J0) 30S ribosomal protein S1| Length = 391 Score = 36.2 bits (82), Expect = 0.019 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_STAAM (Q99U14) 30S ribosomal protein S1| Length = 391 Score = 36.2 bits (82), Expect = 0.019 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_STAAC (Q5HFU7) 30S ribosomal protein S1| Length = 391 Score = 36.2 bits (82), Expect = 0.019 Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_STAEQ (Q5HP69) 30S ribosomal protein S1| Length = 392 Score = 35.4 bits (80), Expect = 0.033 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V VG+ VK ++ SV S ++ +S T+ + + ++ Sbjct: 223 SELSHEHVQTPEEVVSVGEAVKVKVKSVEKDSERISLSIKDTLPTPFENIKGKFHEDDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 G V RL V + +G + ++ H +L+PG + N ++L +D + Sbjct: 283 EGTVVRLANFGAFVEIAPSVQGLVHISEI--DHKHIGSPNEVLEPGQQVNVKILGIDEDN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERISLSIKATL 351 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Frame = +2 Query: 62 GQVVKCRIVSVVPT------SRKLYVSFTMSSHRVSQADTAKVGTIVSGVVERLTPATVV 223 GQ ++ ++ + P SRK + + S D+ G ++ G V RLT Sbjct: 151 GQTIRIKVEELDPENNRVILSRKAVEQLENDAKKASILDSLNEGDVIDGKVARLTNFGAF 210 Query: 224 VSVNGFSKGSILNEQLADHHGQAAQ 298 + + G G + +L+ H Q + Sbjct: 211 IDIGGVD-GLVHVSELSHEHVQTPE 234
>RS1_STAHJ (Q4L6I1) 30S ribosomal protein S1| Length = 392 Score = 34.7 bits (78), Expect = 0.056 Identities = 35/131 (26%), Positives = 58/131 (44%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V VGQ V ++ SV + ++ +S T+ + S ++ Sbjct: 223 SELSHEHVDSPEDVVSVGQEVDVKVKSVEKDAERISLSIKDTLPTPFESIKGQFHEDDVI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 G V RL V + +G + ++A H K L+PG + N ++L +D E Sbjct: 283 EGKVVRLANFGAFVEIAPGVQGLVHISEIAHEHIGTPGEK--LEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERISLSIKATL 351
>RS1_STAAR (Q6GGT5) 30S ribosomal protein S1| Length = 391 Score = 33.9 bits (76), Expect = 0.096 Identities = 34/131 (25%), Positives = 59/131 (45%), Gaps = 3/131 (2%) Frame = +2 Query: 11 SELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF--TMSSHRVSQADTAKVGTIV 184 SEL E E V +GQ VK +I S+ + ++ +S T+ + + + Sbjct: 223 SELSHEHVQTPEEVVSIGQDVKVKIKSIDRDTERISLSIKDTLPTPFENIKGQFHENDDI 282 Query: 185 SGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEG 361 GVV RL V + +G + ++A H +L+PG + N ++L +D E Sbjct: 283 EGVVVRLANFGAFVEIAPGVQGLVHISEIA--HKHIGTPGEVLEPGQQVNVKILGIDEEN 340 Query: 362 QNLVLSAKHSL 394 + + LS K +L Sbjct: 341 ERVSLSIKATL 351
>RS1_CHLPN (Q9Z8M3) 30S ribosomal protein S1| Length = 580 Score = 33.5 bits (75), Expect = 0.13 Identities = 29/118 (24%), Positives = 62/118 (52%), Gaps = 3/118 (2%) Frame = +2 Query: 50 VYHVGQVVKCRIVSVVPTSRKLYVSFT-MSSHRVSQADTA-KVGTIVSGVVERLTPATVV 223 ++ G V+ I+SV S+K+ + +SS+ ++ + GT++SGVV ++T Sbjct: 436 LFKKGNSVEAVILSVDKESKKITLGVKQLSSNPWNEIEAMFPAGTVISGVVTKITAFGAF 495 Query: 224 VSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEGQNLVLSAKHSL 394 V + +G I +L+D A++++++ G + +++ LD + + + LS K L Sbjct: 496 VELQNGIEGLIHVSELSDK--PFAKIEDIISIGENVSAKVIKLDPDHKKVSLSVKEYL 551
>RS1_LEULA (P50889) 40S ribosomal protein S1| Length = 429 Score = 32.0 bits (71), Expect = 0.36 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 7/112 (6%) Frame = +2 Query: 71 VKCRIVSVVPTSRKLYVSFTMSSHRVSQADTAKV------GTIVSGVVERLTPATVVVSV 232 +K +++ + P + +L +S + + A A+V G +V G V RLT V + Sbjct: 191 IKAQVIEIDPANARLILSRKAVAAQELAAQLAEVFSKLSVGEVVEGTVARLTDFGAFVDL 250 Query: 233 NGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEGQNLVLSAK 385 G G + +++ H + ++L G + + ++L LDTE + LS K Sbjct: 251 GGVD-GLVHVSEIS--HDRVKNPADVLTKGDKVDVKILALDTEKGRISLSIK 299
>VEF_GVPU (P41723) Viral-enhancing factor (VEF) (Enhancin) (104 kDa| glycoprotein) (Synergistic factor) Length = 901 Score = 30.0 bits (66), Expect = 1.4 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 7/106 (6%) Frame = +2 Query: 62 GQVVKCRIVSVVPTSRKLYVSFTMSSHRVSQADTAKVGTIVSG---VVERLTPATV---- 220 GQ I+ PT R+ Y F + ++ + + + G ++ G + E T T+ Sbjct: 610 GQSQTFTILEDNPTLRQGYYKFDVVTYSSIRLNMSVAGRLLFGDTFLPEGTTTLTMFPNQ 669 Query: 221 VVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFNQLLVLDTE 358 V+ N F GS LN LA QAA L N ++QL+ ++ E Sbjct: 670 VLEPNLFPDGSALNRTLARLREQAAFLDN-------YSQLMYIENE 708
>RS1_STAS1 (Q49XT0) 30S ribosomal protein S1| Length = 393 Score = 29.6 bits (65), Expect = 1.8 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 7/118 (5%) Frame = +2 Query: 62 GQVVKCRIVSVVPT------SRKLYVSFTMSSHRVSQADTAKVGTIVSGVVERLTPATVV 223 GQV+K ++ + P SRK + + + ++ G ++ G V RLT Sbjct: 151 GQVLKLKVEELDPANNRVILSRKAVEALENAEKKDELLESLNEGDVIEGKVARLTNFGAF 210 Query: 224 VSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEGQNLVLSAKHSL 394 V + G G + +L+ H ++ + +++ G N ++ +D + + + LS K +L Sbjct: 211 VDIGGVD-GLVHVSELSHEHVKSPE--DVVSIGETVNVKIKSVDKDSERISLSIKDTL 265
>RRP5_HUMAN (Q14690) RRP5 protein homolog (Programmed cell death protein 11)| Length = 1871 Score = 29.6 bits (65), Expect = 1.8 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 44 ESVYHVGQVVKCRIVSVVPTSRKLYVS 124 E YH+G VKCR++ P ++KL ++ Sbjct: 494 EKKYHIGDEVKCRVLLCDPEAKKLMMT 520
>MCM6_DROPS (Q29JI9) DNA replication licensing factor Mcm6 (Minichromosome| maintenance 6 protein) Length = 815 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +2 Query: 59 VGQVVKCRIVSVVPTSRKLYVSFTM--SSHRVSQADTAKVGTI--VSGVVERLTP 211 V VK RI + T++ YV+FT + H+V T+K+GT+ +SG V R P Sbjct: 88 VSNYVKDRIG--LKTNKDCYVAFTEVPTRHKVRDLTTSKIGTLIRISGQVVRTHP 140
>VL2_HPV39 (P24839) Minor capsid protein L2| Length = 470 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/19 (57%), Positives = 14/19 (73%) Frame = -2 Query: 232 DTDNNSCRSKSFNNTRDNG 176 D DNN+ +FNNTRD+G Sbjct: 355 DVDNNTYLDTAFNNTRDSG 373
>MCM6_ANOGA (Q7Q0Q1) DNA replication licensing factor Mcm6| Length = 814 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 4/40 (10%) Frame = +2 Query: 104 SRKLYVSFT--MSSHRVSQADTAKVGTI--VSGVVERLTP 211 S++ YVSF + H+V + T+K+GT+ +SG V R P Sbjct: 101 SKECYVSFVDVPTRHKVRELSTSKIGTLIRISGQVVRTHP 140
>RNR2_LACLA (Q02146) Ribonuclease R 2 (EC 3.1.-.-) (RNase R 2) (VacB protein| homolog 2) Length = 665 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = +2 Query: 14 ELGLEPGTKAESVYHVGQVVKCRIVSVVPTSRKLYVSF 127 E + G K+E+VY +GQ +K R+++ RK V F Sbjct: 624 EASIFKGKKSETVYQIGQEIKIRVIAA--NKRKGTVDF 659
>SI1L2_RAT (Q5JCS6) Signal-induced proliferation-associated 1-like protein 2| (Serine-rich synapse-associated protein) Length = 1722 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/61 (29%), Positives = 36/61 (59%) Frame = +2 Query: 197 ERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFNQLLVLDTEGQNLVL 376 ER+ P T + FS G+I+ +A + GQ+A ++ LL +EF +++++ E +N+ Sbjct: 840 ERVKPRT---DAHLFSIGAIMWHVVARYFGQSADIECLLGISNEF--IMLIEKESKNVAF 894 Query: 377 S 379 + Sbjct: 895 N 895
>MCM6_DROME (Q9V461) DNA replication licensing factor Mcm6 (Minichromosome| maintenance 6 protein) (DmMCM6) Length = 817 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +2 Query: 59 VGQVVKCRIVSVVPTSRKLYVSFTM--SSHRVSQADTAKVGTI--VSGVVERLTP 211 V VK RI + T + YV+FT + H+V T+K+GT+ +SG V R P Sbjct: 88 VSNYVKDRIG--LKTQKDCYVAFTEVPTRHKVRDLTTSKIGTLIRISGQVVRTHP 140
>DTH1_DUGTI (Q00400) Homeobox protein DTH-1| Length = 533 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/43 (30%), Positives = 17/43 (39%) Frame = -2 Query: 235 IDTDNNSCRSKSFNNTRDNGAHLCSISLTDPMRRHCKTNI*FP 107 + D N CRS F G I+ P HCK + +P Sbjct: 199 VSLDLNDCRSNMFEYPSQTGHQYPDINGNGPRLLHCKQELSYP 241
>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1| Length = 263 Score = 28.1 bits (61), Expect = 5.3 Identities = 26/108 (24%), Positives = 54/108 (50%), Gaps = 2/108 (1%) Frame = +2 Query: 71 VKCRIVSVVPTSRKLYVSFTMSSHRVSQADTAK-VGTIVSGVVERLTPATVVVSVNGFSK 247 +K ++++V S L +S + ++QA + VG I+ GV+ ++TP + + G K Sbjct: 159 IKLKLLNVEEKSNNLILSHRRAL--IAQASSNLIVGNIIEGVINQITPYGLFIKA-GNLK 215 Query: 248 GSILNEQLADHHGQAAQLKNLLKPGHEFNQLLV-LDTEGQNLVLSAKH 388 G + ++ + Q ++ + K G +++ +D + L LS KH Sbjct: 216 GLVHISEI--NVKQVERIPSQFKIGDTIKAVIIHVDKKQGRLSLSMKH 261
>VEF_GVTN (P29998) Viral-enhancing factor (VEF) (Enhancin) (104 kDa| glycoprotein) (Synergistic factor) Length = 901 Score = 28.1 bits (61), Expect = 5.3 Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 7/114 (6%) Frame = +2 Query: 62 GQVVKCRIVSVVPTSRKLYVSF---TMSSHRVSQADTAKV---GTIVSGVVERLTP-ATV 220 GQ I+ PT R+ Y F T SS R++ + ++ I +G LT Sbjct: 610 GQSQTFTILEDNPTLRQGYYKFDVVTYSSIRLNMSVAGRLLFRRYIFAGGTTTLTMFPNQ 669 Query: 221 VVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFNQLLVLDTEGQNLVLSA 382 V+ N F GS LN LA QAA L N ++QL+ ++ E ++ + A Sbjct: 670 VLEPNLFPDGSALNRTLARLREQAAFLDN-------YSQLMYIENELRDTIYLA 716
>IRS1_CERAE (Q28224) Insulin receptor substrate 1 (IRS-1)| Length = 1251 Score = 28.1 bits (61), Expect = 5.3 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +2 Query: 77 CRIVSVVPTSRKLYVSFTMSSHRVSQADTAKVGTI 181 CR VP+SR Y++ MS R S DT+ + + Sbjct: 985 CRPTRAVPSSRGDYMTMQMSCPRQSYVDTSPIAPV 1019
>OGT1_HUMAN (O15294) UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase 110 kDa subunit (EC 2.4.1.-) (O-GlcNAc transferase p110 subunit) Length = 1046 Score = 28.1 bits (61), Expect = 5.3 Identities = 18/77 (23%), Positives = 33/77 (42%) Frame = +2 Query: 134 SSHRVSQADTAKVGTIVSGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLL 313 SS+ + TI V+E + + +++NGFS ++ LA Q+ N Sbjct: 767 SSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFS----ISNGLA-----TTQINNKA 817 Query: 314 KPGHEFNQLLVLDTEGQ 364 G E + +++ T Q Sbjct: 818 ATGEEVPRTIIVTTRSQ 834
>RS1_MYCTU (O06147) 30S ribosomal protein S1| Length = 481 Score = 27.7 bits (60), Expect = 6.9 Identities = 29/120 (24%), Positives = 54/120 (45%), Gaps = 10/120 (8%) Frame = +2 Query: 56 HVGQVVKCRIVSV------VPTSRKLYVSFTMSSHRVSQADTAKVGTIVSGVVERLTPAT 217 ++G+ ++ +I+ + V SR+ ++ T S R + + GTI GVV + Sbjct: 164 YIGKEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNNLQKGTIRKGVVSSIVNFG 223 Query: 218 VVV---SVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFN-QLLVLDTEGQNLVLSAK 385 V V+G S L+ + DH + Q+ G E ++L +D + + + LS K Sbjct: 224 AFVDLGGVDGLVHVSELSWKHIDHPSEVVQV------GDEVTVEVLDVDMDRERVSLSLK 277
>RS1_BUCBP (Q89AJ3) 30S ribosomal protein S1| Length = 566 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/71 (23%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Frame = +2 Query: 44 ESVYHVGQVVKCRIVSV------VPTSRKLYVSFTMSSHRVSQADTAKVGTIVSGVVERL 205 E+++ G+ ++ +++ + V SR+ + ++ R +T + G IVSG+V+ L Sbjct: 143 ETMHLEGKELEFKVIKLDQKRNNVVVSRRAVIESEYNAERNLLLETLQEGLIVSGIVKNL 202 Query: 206 TPATVVVSVNG 238 T V + G Sbjct: 203 TDYGAFVDLGG 213
>HEM3_ARCFU (O29026) Probable porphobilinogen deaminase (EC 2.5.1.61) (PBG)| (Hydroxymethylbilane synthase) (HMBS) (Pre-uroporphyrinogen synthase) Length = 289 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 5/53 (9%) Frame = +2 Query: 173 GTIVSGVVERLTPATVVVSVNG-----FSKGSILNEQLADHHGQAAQLKNLLK 316 GT+V+ V+ER +P V++S +G +G+++ Q ++L+ L+ Sbjct: 86 GTVVAAVIERDSPCDVLISRDGSTLEELDEGAVVGTSSLRRRAQLSRLRGDLR 138
>RGAP1_HUMAN (Q9H0H5) Rac GTPase-activating protein 1 (MgcRacGAP)| Length = 632 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%) Frame = -2 Query: 259 KYRSLGEAIDTDNNSCRSKSFNNTRDNGAHLCSISLTDPM----RRHCKTNI*FP*SGDN 92 K RS+G A+D N S +K+ ++G + ++S + + R KT P + D+ Sbjct: 200 KTRSIGSAVDQGNESIVAKTTVTVPNDGGPIEAVSTIETVPYWTRSRRKTGTLQPWNSDS 259 Query: 91 AYNSTFDNLSNMINTFSFGT 32 NS L T S GT Sbjct: 260 TLNSR--QLEPRTETDSVGT 277
>CTX80_EUPOC (Q9N9X3) Ciliary WD repeat-containing protein ctxp80| Length = 716 Score = 27.3 bits (59), Expect = 9.0 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 8/82 (9%) Frame = +2 Query: 158 DTAKVGTIVSGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKP------ 319 ++AK G +VSG+ T T + V+ S GS++ AD +G +N + Sbjct: 623 NSAKYGWLVSGIFPAGTDGTHINHVDFSSSGSLI--VTADDYGLVNVWRNPARAGATPVS 680 Query: 320 --GHEFNQLLVLDTEGQNLVLS 379 GH + + T+G++ +LS Sbjct: 681 LRGHSEHVVRTYFTQGESYILS 702
>INI7_HUMAN (P40305) Interferon-alpha-induced 11.5 kDa protein (p27) (ISG12(a)| protein) Length = 122 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/48 (29%), Positives = 24/48 (50%) Frame = +2 Query: 164 AKVGTIVSGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKN 307 A++ T+V G V + +V+S GF+ I + +A AA + N Sbjct: 31 ARIATVVIGGVVAMAAVPMVLSAMGFTAAGIASSSIAAKMMSAAAIAN 78
>HANG_DROME (Q9VXG1) Zinc finger protein hangover| Length = 1959 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%) Frame = -3 Query: 240 KPLTLTTTVAGVSRSTT-PETMVPTFAVS 157 +P T TTTVA S TT PE +PT A + Sbjct: 36 QPGTTTTTVATASAGTTSPEAAIPTAATA 64
>OGT1_RAT (P56558) UDP-N-acetylglucosamine--peptide| N-acetylglucosaminyltransferase 110 kDa subunit (EC 2.4.1.-) (O-GlcNAc transferase p110 subunit) Length = 1036 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/65 (24%), Positives = 30/65 (46%) Frame = +2 Query: 170 VGTIVSGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLKNLLKPGHEFNQLLVL 349 + TI V+E + + +++NGFS ++ LA Q+ N G E + +++ Sbjct: 769 MNTIAEAVIEMINRGQIQITINGFS----ISNGLA-----TTQINNKAATGEEVPRTIIV 819 Query: 350 DTEGQ 364 T Q Sbjct: 820 TTRSQ 824 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,038,832 Number of Sequences: 219361 Number of extensions: 844900 Number of successful extensions: 2568 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2422 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2566 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
