ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MERA_SHIFL (P08332) Mercuric reductase (EC 1.16.1.1) (Hg(II) red... 32 0.68
2STAG1_XENLA (Q9DGN1) Cohesin subunit SA-1 (xSA-1) (Stromal antig... 28 9.9
3ODO2_MOUSE (Q9D2G2) Dihydrolipoyllysine-residue succinyltransfer... 28 9.9

>MERA_SHIFL (P08332) Mercuric reductase (EC 1.16.1.1) (Hg(II) reductase)|
          Length = 564

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -2

Query: 348 LRNRILSLLGENDKTGSGGASTMSCISLGG 259
           L +++  LLG NDKTGS GA  ++ I  GG
Sbjct: 78  LLDKMRDLLGRNDKTGSSGALHIAVIGSGG 107



to top

>STAG1_XENLA (Q9DGN1) Cohesin subunit SA-1 (xSA-1) (Stromal antigen 1 homolog)|
           (SCC3 homolog 1)
          Length = 1265

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 105 ERPRKTRGAKGSAQGREREQGESEASPVEDGKG 7
           ++PRKT G +  A+   R +G +   P ++G+G
Sbjct: 57  KKPRKTPGDRSRAEPGSRGRGRANGHPQQNGEG 89



to top

>ODO2_MOUSE (Q9D2G2) Dihydrolipoyllysine-residue succinyltransferase component|
           of 2-oxoglutarate dehydrogenase complex, mitochondrial
           precursor (EC 2.3.1.61) (Dihydrolipoamide
           succinyltransferase component of 2-oxoglutarate
           dehydrogenase complex) (E2) (E2
          Length = 454

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 260 PPKEIQDIVDAPPLPVLSFSPSKDKILFLKRRALPPLSD 376
           PP     +   PP+P  S  PS   +  +K  A PPL++
Sbjct: 175 PPPAAPVLTQMPPVPSPSQPPSSKPVSAIKPTAAPPLAE 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,460,490
Number of Sequences: 219361
Number of extensions: 686254
Number of successful extensions: 2416
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2414
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top