ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45f06 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 155 bits (391), Expect = 5e-38 Identities = 79/98 (80%), Positives = 89/98 (90%) Frame = +1 Query: 124 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 303 W++LL++S+KLLEQAA + FP LQRNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR Sbjct: 10 WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69 Query: 304 EGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLXQ 417 EGINAEQL RDLKSFELKTTFEDVFP+EATSVEEYL Q Sbjct: 70 EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQ 107
>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (An4a) Length = 820 Score = 49.3 bits (116), Expect = 4e-06 Identities = 26/97 (26%), Positives = 53/97 (54%), Gaps = 1/97 (1%) Frame = +1 Query: 124 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 300 + ELL + +L + P ++RNL +++ +L++KT+ R S ++ A+ LL Sbjct: 6 FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65 Query: 301 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYL 411 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 47.0 bits (110), Expect = 2e-05 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = +1 Query: 124 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 300 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65 Query: 301 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYL 411 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (CBP-interacting protein 4) Length = 819 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = +1 Query: 124 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 300 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 301 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYL 411 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) Length = 819 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/97 (24%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = +1 Query: 124 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 300 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 301 REGINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYL 411 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)| Length = 933 Score = 34.3 bits (77), Expect = 0.12 Identities = 20/68 (29%), Positives = 34/68 (50%) Frame = +1 Query: 172 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 351 L P P +Q L+QLE + L++K + A LLA G+NAEQ + + S Sbjct: 40 LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97 Query: 352 LKTTFEDV 375 + + ++ + Sbjct: 98 IHSPWDQL 105
>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 33.1 bits (74), Expect = 0.27 Identities = 19/70 (27%), Positives = 30/70 (42%) Frame = +1 Query: 181 HFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 360 H P + +NL ++ K+ + A P L+ +EG+ AEQ + F + Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271 Query: 361 TFEDVFPSEA 390 TF V P A Sbjct: 272 TFVHVLPEGA 281
>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific| kinase substrate) (STK22 substrate 1) Length = 592 Score = 31.2 bits (69), Expect = 1.0 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = +1 Query: 157 LEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 330 ++Q LTP P+ QR ++ L + AK +RAEA S +L RL E + A+ LT Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535 Query: 331 RDLKSFELKTTFE 369 +K E T + Sbjct: 536 DKMKPEEKMATLD 548
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 30.4 bits (67), Expect = 1.7 Identities = 18/45 (40%), Positives = 27/45 (60%) Frame = +1 Query: 172 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 306 L P PA+Q LDQL+ L K KT+ +E+ SQS + L +++ Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSLSSKQ 398
>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360| Length = 884 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = +1 Query: 205 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 384 L+ LE+L+T + + + + + LS +RLL G + L R L+S + T F Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722 Query: 385 EATSVEE 405 ++ S+ E Sbjct: 723 KSCSISE 729
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -3 Query: 310 SPRAPATWWRRATVTAPRRGSSWP 239 SPRA W+R+T P R S WP Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215
>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI| Length = 196 Score = 28.5 bits (62), Expect = 6.6 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -2 Query: 368 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 252 ++ +L+ N+ RS+V C+ LIP+ NL V C GA R Sbjct: 54 ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95
>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -2 Query: 341 LRSLVSCSALIPSRASNLVAESDC 270 LRSL SC LIP A V +DC Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/64 (34%), Positives = 36/64 (56%) Frame = -2 Query: 404 SSTEVASDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGASARIVLALSLVE 225 SS+EV S +SS + S+ +++S S+ +P+ VA + AS+ + + SLV Sbjct: 118 SSSEVTSSSSSSS--ISPSSSSSTIISSSSSLPTFT---VASTSSTVASSTLSTSSSLVI 172 Query: 224 STSS 213 STSS Sbjct: 173 STSS 176
>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor| Length = 2316 Score = 28.1 bits (61), Expect = 8.6 Identities = 25/97 (25%), Positives = 44/97 (45%) Frame = +1 Query: 127 SELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 306 SE ++ S L E +++ ++ + E LST T + + S+SLSA+ L+ Sbjct: 1846 SESISASESLSESESISA-----SESISESESLSTSESLSTSESLSESESLSASESLSES 1900 Query: 307 GINAEQLTRDLKSFELKTTFEDVFPSEATSVEEYLXQ 417 +E + L E + E + SE+ S E L + Sbjct: 1901 ESLSE--SESLSESESLSESESLSASESLSASESLSE 1935
>PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +1 Query: 163 QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 318 Q A++ H AL+R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALAERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIGE 68 Query: 319 E 321 E Sbjct: 69 E 69 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.310 0.125 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,100,794 Number of Sequences: 219361 Number of extensions: 565957 Number of successful extensions: 1468 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1458 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1468 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
