ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45e11 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099745.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091J21, full insert sequence Length = 3189 Score = 176 bits (89), Expect = 4e-41 Identities = 179/209 (85%) Strand = Plus / Plus Query: 223 gtcgacgacgtcaacgcggaccgcacggtgctcgccggcacccggctcagcctcatcgcg 282 |||| |||||||||||| ||||| || ||||| ||||| ||| ||||||||||||| | Sbjct: 292 gtcggcgacgtcaacgccgaccggaccgtgctggccgggaccacgctcagcctcatctcc 351 Query: 283 caggacaccaactgcagcggcttcgtcgggaccatcgaagcattggagctaatggagaaa 342 |||||||||||||||||||| || | || || |||||||||||| || ||||||||||| Sbjct: 352 caggacaccaactgcagcgggtttcttggaacaatcgaagcattgcagttaatggagaaa 411 Query: 343 aatgtagttgctgttattggcccacagtcatctggtataggccatgtcatctcccatgtt 402 || || |||||||| ||||| ||||| || ||||| ||||||||||| || || |||||| Sbjct: 412 aacgtggttgctgtcattggtccacaatcctctggaataggccatgttatttcacatgtt 471 Query: 403 gttaacgagctacatgttcctcttctatc 431 ||||| |||||||||||||||||| |||| Sbjct: 472 gttaatgagctacatgttcctcttttatc 500
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 123 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 182 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 27962064 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 27962123 Query: 183 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 242 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 27962124 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 27962183 Query: 243 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 302 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 27962184 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 27962243 Score = 109 bits (55), Expect = 8e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 321 agcattggagctaatggagaaaaatgtagttgctgttattggcccacagtcatctggtat 380 ||||||| || ||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 27963733 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 27963792 Query: 381 aggccatgtcatctcccatgttgttaacgagctacatgttcctcttctatc 431 ||||||||| || || ||||||||||| |||||||||||||||||| |||| Sbjct: 27963793 aggccatgttatttcacatgttgttaatgagctacatgttcctcttttatc 27963843 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccatcgagctcgccgtcgacgacg 232 |||||||| ||||||||||||||| Sbjct: 1413845 ccatcgagttcgccgtcgacgacg 1413822
>dbj|AP004797.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0547F09 Length = 140615 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 123 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 182 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 6883 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 6942 Query: 183 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 242 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 6943 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 7002 Query: 243 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 302 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 7003 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 7062 Score = 109 bits (55), Expect = 8e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 321 agcattggagctaatggagaaaaatgtagttgctgttattggcccacagtcatctggtat 380 ||||||| || ||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 8552 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 8611 Query: 381 aggccatgtcatctcccatgttgttaacgagctacatgttcctcttctatc 431 ||||||||| || || ||||||||||| |||||||||||||||||| |||| Sbjct: 8612 aggccatgttatttcacatgttgttaatgagctacatgttcctcttttatc 8662
>dbj|AP003723.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0003H08 Length = 142068 Score = 167 bits (84), Expect = 4e-38 Identities = 156/180 (86%) Strand = Plus / Plus Query: 123 ggcgggggccgggccgcgtccgagcgaggtcgccgtgggcgcgctcttcacctacgactc 182 ||||||||| ||| ||| ||||||||||| | | |||||||||| |||||||||||| Sbjct: 115987 ggcgggggcgggggagcggccgagcgaggtgtcaatcggcgcgctctacacctacgactc 116046 Query: 183 cgtcattggccgcgcggcgcggctcgccatcgagctcgccgtcgacgacgtcaacgcgga 242 || ||||| ||||||||| |||||||||||||||||||||||| |||||||||||| || Sbjct: 116047 ggtgattgggcgcgcggcggggctcgccatcgagctcgccgtcggcgacgtcaacgccga 116106 Query: 243 ccgcacggtgctcgccggcacccggctcagcctcatcgcgcaggacaccaactgcagcgg 302 ||| || ||||| ||||| ||| ||||||||||||| | |||||||||||||||||||| Sbjct: 116107 ccggaccgtgctggccgggaccacgctcagcctcatctcccaggacaccaactgcagcgg 116166 Score = 109 bits (55), Expect = 8e-21 Identities = 97/111 (87%) Strand = Plus / Plus Query: 321 agcattggagctaatggagaaaaatgtagttgctgttattggcccacagtcatctggtat 380 ||||||| || ||||||||||||| || |||||||| ||||| ||||| || ||||| || Sbjct: 117656 agcattgcagttaatggagaaaaacgtggttgctgtcattggtccacaatcctctggaat 117715 Query: 381 aggccatgtcatctcccatgttgttaacgagctacatgttcctcttctatc 431 ||||||||| || || ||||||||||| |||||||||||||||||| |||| Sbjct: 117716 aggccatgttatttcacatgttgttaatgagctacatgttcctcttttatc 117766
>ref|NM_194213.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2868 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 160 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 219 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 100 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 159 Query: 220 gccgtcgacgacgt 233 ||||||| |||||| Sbjct: 160 gccgtcgccgacgt 173
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 160 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 219 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 190667 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 190726 Query: 220 gccgtcgacgacgt 233 ||||||| |||||| Sbjct: 190727 gccgtcgccgacgt 190740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tcgccgtgggcgcgctcttc 171 |||||||||||||||||||| Sbjct: 22300726 tcgccgtgggcgcgctcttc 22300707
>dbj|AP005187.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0446F04 Length = 175390 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 160 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 219 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 25531 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 25590 Query: 220 gccgtcgacgacgt 233 ||||||| |||||| Sbjct: 25591 gccgtcgccgacgt 25604
>dbj|AK122009.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033111F13, full insert sequence Length = 3648 Score = 60.0 bits (30), Expect = 6e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 160 ggcgcgctcttcacctacgactccgtcattggccgcgcggcgcggctcgccatcgagctc 219 |||||||||||||||| |||||||||||| || | ||||| | ||||||||||||| Sbjct: 616 ggcgcgctcttcaccttcgactccgtcatcgggagggcggccaaggtcgccatcgagctg 675 Query: 220 gccgtcgacgacgt 233 ||||||| |||||| Sbjct: 676 gccgtcgccgacgt 689
>gb|AC110173.11| Mus musculus chromosome 8, clone RP24-396D19, complete sequence Length = 136535 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagacagggac 31 |||||||||||||||||||| ||||| |||| Sbjct: 112591 acacacacagacagaacagaaagacacggac 112561
>gb|AC115051.6| Mus musculus chromosome 1, clone RP24-340A23, complete sequence Length = 158391 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagacagggac 31 ||||||||||||||||||| |||||| |||| Sbjct: 6906 acacacacagacagaacaggcagacacggac 6936
>dbj|AB218878.1| Streptomyces griseus genes for AraC-type transcriptional regulator, ABC-transport system, substrate-binding extracellular domain, ABC-transport system, membrane integral subunit, ABC-transport system, membrane integral subunit, ABC-transport system, ATP-binding protein, Cytochrome P-450, type III polyketide synthase, subtilisine-like serine protease, chitinase, partial and complete cds Length = 12095 Score = 46.1 bits (23), Expect = 0.095 Identities = 26/27 (96%) Strand = Plus / Plus Query: 254 tcgccggcacccggctcagcctcatcg 280 |||||||||||||||||| |||||||| Sbjct: 3067 tcgccggcacccggctcatcctcatcg 3093
>gb|AC154451.2| Mus musculus BAC clone RP24-171K15 from chromosome 13, complete sequence Length = 162744 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagacaggg 29 ||||||||||||||||||||||| Sbjct: 66270 acagacagaacagacagacaggg 66292
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Plus Query: 100 gccgcggcgagggcggtcaccgc 122 ||||||||||||||||||||||| Sbjct: 4139603 gccgcggcgagggcggtcaccgc 4139625
>gb|AC113326.9| Mus musculus chromosome 1, clone RP23-454G7, complete sequence Length = 192734 Score = 46.1 bits (23), Expect = 0.095 Identities = 29/31 (93%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagacagggac 31 ||||||||||||||||||| |||||| |||| Sbjct: 146144 acacacacagacagaacaggcagacacggac 146174
>gb|AC121599.3| Mus musculus BAC clone RP23-300H21 from 14, complete sequence Length = 218747 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagaca 26 ||||||| |||||||||||||||||| Sbjct: 204204 acacacatagacagaacagacagaca 204229
>emb|BX640448.1| Bordetella bronchiseptica strain RB50, complete genome; segment 12/16 Length = 347137 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 cgccggcacccggctcagcctc 276 |||||||||||||||||||||| Sbjct: 64881 cgccggcacccggctcagcctc 64860
>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14 Length = 349305 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 cgccggcacccggctcagcctc 276 |||||||||||||||||||||| Sbjct: 1388 cgccggcacccggctcagcctc 1367
>emb|BX640418.1| Bordetella pertussis strain Tohama I, complete genome; segment 8/12 Length = 349346 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 cgccggcacccggctcagcctc 276 |||||||||||||||||||||| Sbjct: 65045 cgccggcacccggctcagcctc 65024
>gb|DQ059604.1| Melampsora laricis-populina clone MLP13 microsatellite sequence Length = 187 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 7 acagacagaacagacagacagg 28 |||||||||||||||||||||| Sbjct: 145 acagacagaacagacagacagg 124
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 97 gccgccgcggcgagggcggtcaccgc 122 ||||||||||||||| |||||||||| Sbjct: 1005387 gccgccgcggcgaggtcggtcaccgc 1005412
>emb|BX000363.21| Zebrafish DNA sequence from clone CH211-10K11 in linkage group 5, complete sequence Length = 174403 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 340 aaaaatgtagttgctgttattg 361 |||||||||||||||||||||| Sbjct: 35572 aaaaatgtagttgctgttattg 35551
>gb|AC154840.2| Mus musculus BAC clone RP23-61I7 from chromosome 14, complete sequence Length = 195596 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagaca 26 ||||||| |||||||||||||||||| Sbjct: 108388 acacacatagacagaacagacagaca 108363
>emb|X63356.1|MMUPA M.musculus upstream region of promoter of uPA gene Length = 4431 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagaca 26 ||||||| |||||||||||||||||| Sbjct: 3481 acacacatagacagaacagacagaca 3506
>emb|X52971.1|MMUPAACT Mouse gene for urokinase plasminogen activator (EC 3.4.21.31) Length = 986 Score = 44.1 bits (22), Expect = 0.38 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagaca 26 ||||||| |||||||||||||||||| Sbjct: 42 acacacatagacagaacagacagaca 67
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 cgaagcattggagctaatggagaaa 342 ||||||||||||||| ||||||||| Sbjct: 3474894 cgaagcattggagctgatggagaaa 3474870
>gb|AC132492.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0605G01, complete sequence Length = 146303 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcgt 141 ||||||||||||||||||||| Sbjct: 4951 gcggcgggggccgggccgcgt 4971
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 318 cgaagcattggagctaatggagaaa 342 ||||||||||||||| ||||||||| Sbjct: 511109 cgaagcattggagctgatggagaaa 511085
>gb|AC134932.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0092G21, complete sequence Length = 151267 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcgt 141 ||||||||||||||||||||| Sbjct: 122773 gcggcgggggccgggccgcgt 122793
>emb|AJ402811.1|SSA402811 Salmo salar microsatellite DNA, clone 30F10UOS Length = 415 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagacag 27 ||||||||||||||||||||| Sbjct: 369 acagacagaacagacagacag 389
>emb|AJ402770.1|SSA402770 Salmo salar microsatellite DNA, clone 30E1UOS Length = 273 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagacag 27 ||||||||||||||||||||| Sbjct: 140 acagacagaacagacagacag 160
>gb|CP000001.1| Bacillus cereus E33L, complete genome Length = 5300915 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 taatggagaaaaatgtagttg 352 ||||||||||||||||||||| Sbjct: 1731491 taatggagaaaaatgtagttg 1731511
>gb|BT009448.1| Triticum aestivum clone wlmk8.pk0018.e8:fis, full insert mRNA sequence Length = 1560 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 204 gctcgccatcgagctcgccgtcgacgacg 232 |||| |||||| ||||||||||||||||| Sbjct: 60 gctccccatcgtgctcgccgtcgacgacg 88
>emb|BX294009.1|NC64C2 Neurospora crassa DNA linkage group V Cosmid contig 64C2 Length = 81866 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagacag 27 ||||||||||||||||||||| Sbjct: 2642 acagacagaacagacagacag 2662
>emb|BX470119.17| Zebrafish DNA sequence from clone CH211-225L4 in linkage group 20, complete sequence Length = 106989 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagacag 27 ||||||||||||||||||||| Sbjct: 103011 acagacagaacagacagacag 103031
>gb|AY069953.1| Hordeum vulgare APETALA2-like protein (AP2L1) mRNA, complete cds Length = 1815 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 130 gccgggccgcgtccgagcgaggtcg 154 |||| |||||||||||||||||||| Sbjct: 180 gccgtgccgcgtccgagcgaggtcg 156
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ctcgccgtcgacgacgtcaac 237 ||||||||||||||||||||| Sbjct: 15467183 ctcgccgtcgacgacgtcaac 15467163
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcgt 141 ||||||||||||||||||||| Sbjct: 19200875 gcggcgggggccgggccgcgt 19200895 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 683414 cgccgccgcggcgagggcgg 683395
>gb|AF166333.1|AF166333 Myxococcus xanthus histidine protein kinase AsgD (asgD) gene, complete cds Length = 3080 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 117 caccgcggcgggggccgggccgcgt 141 |||||||||||| |||||||||||| Sbjct: 3007 caccgcggcgggtgccgggccgcgt 3031
>gb|AC091978.3| Homo sapiens chromosome 5 clone RP11-531A21, complete sequence Length = 192708 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagacaggg 29 ||||||||||| |||| |||||||||||| Sbjct: 26518 acacacacagagagaagagacagacaggg 26490
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 146 gcgaggtcgccgtgggcgcgc 166 ||||||||||||||||||||| Sbjct: 3212913 gcgaggtcgccgtgggcgcgc 3212893
>emb|BX936462.20| Zebrafish DNA sequence from clone CH211-147O6 in linkage group 20, complete sequence Length = 196432 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 7 acagacagaacagacagacag 27 ||||||||||||||||||||| Sbjct: 13816 acagacagaacagacagacag 13796
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome Length = 5224283 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 332 taatggagaaaaatgtagttg 352 ||||||||||||||||||||| Sbjct: 1841431 taatggagaaaaatgtagttg 1841451
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 217 ctcgccgtcgacgacgtcaac 237 ||||||||||||||||||||| Sbjct: 15421466 ctcgccgtcgacgacgtcaac 15421446
>emb|AL713911.3|CNS07YQC Oryza sativa chromosome 12, . BAC OSJNBb0066P16 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 126680 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 217 ctcgccgtcgacgacgtcaac 237 ||||||||||||||||||||| Sbjct: 35304 ctcgccgtcgacgacgtcaac 35324
>ref|XM_478702.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tcgccgtgggcgcgctcttc 171 |||||||||||||||||||| Sbjct: 650 tcgccgtgggcgcgctcttc 669
>ref|XM_475078.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2535 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 1615 cgccgccgcggcgagggcgg 1596
>ref|XM_473186.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1407 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 63 cgccgccgcggcgagggcgg 44
>gb|AY540995.1| Achromobacter xylosoxidans subsp. denitrificans strain EST4002 plasmid pEST4011, complete sequence Length = 76958 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 ccgcgcggcgcggctcgcca 211 |||||||||||||||||||| Sbjct: 45177 ccgcgcggcgcggctcgcca 45196
>gb|AC154278.2| Mus musculus BAC clone RP24-269E24 from chromosome 16, complete sequence Length = 153579 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 62697 acacacacagacagacacagacagacag 62724 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 62609 acacacacagacagacacagacagacag 62636
>gb|AC120366.9| Mus musculus chromosome 1, clone RP24-294P1, complete sequence Length = 156784 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 54604 acacacacagacagacacagacagacag 54631
>gb|AC131725.2| Mus musculus BAC clone RP23-129H16 from chromosome 5, complete sequence Length = 203437 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 152035 acacacacagacagacacagacagacag 152062 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 151815 acacacacagacagacacagacagacag 151842
>gb|AC100600.22| Mus musculus chromosome 9, clone RP23-157H17, complete sequence Length = 225538 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 58944 acacacacagacagacacagacagacag 58971 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 58852 acacacacagacagacacagacagacag 58879 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 58810 acacacacagacagacacagacagacag 58837
>gb|AC144700.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0017H17, complete sequence Length = 156331 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acacacagacagaacagaca 22 |||||||||||||||||||| Sbjct: 83898 acacacagacagaacagaca 83917
>gb|AC139571.2| Mus musculus BAC clone RP24-73K9 from chromosome 15, complete sequence Length = 210089 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 7 acagacagaacagacagacagggacggg 34 ||||||||| |||||||||||||||||| Sbjct: 144931 acagacaga-cagacagacagggacggg 144905
>gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB), ORFC (orfC), ORFD (orfD), ORFE (orfE), ORFF (orfF), ORFG (orfG), ORFH (orfH), LinX1 (linX1), LinX2 (linX2), and LinA (linA) genes, complete cds; insertion sequence IS6100A, complete sequence; ORFJ' (orfJ') and ORFK (orfK) genes, complete cds; insertion sequence IS6100B, complete sequence; LinC (linC) gene, complete cds; insertion sequence IS6100C, complete sequence; and 'ORFN ('orfN), ORFO (orfO), ORFP (orfP), ORFQ (orfQ), ORFR (orfR), ORFS (orfS), ORFT (orfT), ORFU (orfU), ORFV (orfV), ORFW (orfW), ORFX (orfX), and ORFY (orfY) genes, complete cds Length = 41034 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ccttgctcgccgccgcggcg 108 |||||||||||||||||||| Sbjct: 2802 ccttgctcgccgccgcggcg 2783
>gb|BC036819.1| Homo sapiens tubulin tyrosine ligase, mRNA (cDNA clone MGC:46235 IMAGE:5767758), complete cds Length = 2070 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcg 140 |||||||||||||||||||| Sbjct: 78 gcggcgggggccgggccgcg 97
>gb|AC124374.5| Mus musculus BAC clone RP24-567K8 from chromosome 5, complete sequence Length = 181395 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 35430 acacacacagacagacacagacagacag 35403 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 35210 acacacacagacagacacagacagacag 35183
>emb|AJ402784.1|SSA402784 Salmo salar microsatellite DNA, clone 14C7UOS Length = 302 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacaga 24 ||||||||||||||| |||||||| Sbjct: 97 acacacacagacagaccagacaga 120
>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome Length = 2462499 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 cctcatcgcgcaggacacca 292 |||||||||||||||||||| Sbjct: 1585916 cctcatcgcgcaggacacca 1585897
>gb|AC124412.3| Mus musculus BAC clone RP24-274J3 from chromosome 9, complete sequence Length = 175945 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 84038 acacacacagacagagacagacagacag 84011
>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence, complete sequence Length = 100835 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 aatggagaaaaatgtagttgctgttatt 360 |||||||||||||||| |||||| |||| Sbjct: 84685 aatggagaaaaatgtatttgctgatatt 84712
>gb|AC113106.9| Mus musculus chromosome 9, clone RP23-325C1, complete sequence Length = 191609 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 158447 acacacacagacagagacagacagacag 158420
>gb|AF029344.2| Burkholderia cepacia putative transcription factor, malonate decarboxylase epsilon-subunit (mdcH), MdcB (mdcB), MdcG (mdcG), malonate decarboxylase gamma-subunit (mdcE), malonate decarboxylase beta-subunit (mdcD), malonate decarboxylase delta-subunit (mdcC), malonate decarboxylase alpha-subunit (mdcA), proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase bifunctional protein (putA), leucine-responsive regulatory protein (lrp), chloride-channel protein, chloromuconate cycloisomerase (tfdD), indole acetamide hydrolase (iaaH), LysR-type transcription factor (tfdR), chlorocatechol 1,2-dioxygenase (tfdC), dienelactone hydrolase (tfdE), 2,4-dichlorophenol hydroxylase (tfdB), putative transport protein (tfdK), 2,4-D/alpha-ketoglutarate dioxygenase (tfdA), maleylacetate reductase (tfdF), and putative transposase genes, complete cds; and unknown genes Length = 36642 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ccgcgcggcgcggctcgcca 211 |||||||||||||||||||| Sbjct: 9967 ccgcgcggcgcggctcgcca 9948
>gb|AY342322.1| Oryza sativa (japonica cultivar-group) monosaccharide transporter 6 (MST6) mRNA, complete cds Length = 1590 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tcgccgtgggcgcgctcttc 171 |||||||||||||||||||| Sbjct: 650 tcgccgtgggcgcgctcttc 669
>emb|AL359076.16| Human DNA sequence from clone RP11-264I13 on chromosome 9 Contains the 5' end of the SMARCA2 gene for SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily a member 2 (SNF2LA), a novel gene and two CpG islands, complete sequence Length = 138859 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcg 140 |||||||||||||||||||| Sbjct: 10098 gcggcgggggccgggccgcg 10117
>gb|AC098697.4| Rattus norvegicus strain Brown Norway clone RP31-387A21, complete sequence Length = 123000 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 63732 acacacacagacagagacagacagacag 63759
>gb|AC158762.4| Mus musculus chromosome 1, clone RP24-255O19, complete sequence Length = 176468 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 106445 acacacacagacagagacagacagacag 106418
>gb|AC104325.28| Mus musculus strain C57BL/6J clone rp23-204m3 map 15, complete sequence Length = 224086 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacagaacagacagacagg 28 |||||||||||||| ||||||||||||| Sbjct: 137007 acacacacagacag-acagacagacagg 137033
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 318 cgaagcattggagctaatggagaa 341 ||||||||||||||| |||||||| Sbjct: 319730 cgaagcattggagctgatggagaa 319707
>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29 Length = 303550 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 caacgcggaccgcacggtgc 253 |||||||||||||||||||| Sbjct: 125334 caacgcggaccgcacggtgc 125315
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 5.9 Identities = 32/36 (88%) Strand = Plus / Minus Query: 223 gtcgacgacgtcaacgcggaccgcacggtgctcgcc 258 ||||||||||||| ||| |||||||||||| |||| Sbjct: 43447 gtcgacgacgtcaccgcctaccgcacggtgcgcgcc 43412
>emb|AL731616.5|OSJN00262 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0073E02, complete sequence Length = 139080 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 51273 cgccgccgcggcgagggcgg 51254
>gb|AC161570.6| Mus musculus chromosome 5, clone RP23-36O9, complete sequence Length = 228402 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 96465 acacacacagacagacacagacagacag 96492 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 96245 acacacacagacagacacagacagacag 96272
>emb|BX510651.9| Zebrafish DNA sequence from clone DKEY-232A10 in linkage group 23, complete sequence Length = 74936 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagacagg 28 |||||||||||||| ||||||||||||| Sbjct: 65672 acacacacagacag-acagacagacagg 65646
>emb|BX537264.9| Zebrafish DNA sequence from clone CH211-1C4 in linkage group 5, complete sequence Length = 160220 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 acagacagaacagacagaca 26 |||||||||||||||||||| Sbjct: 131355 acagacagaacagacagaca 131374
>emb|BX255941.9| Zebrafish DNA sequence from clone BUSM1-182C22 in linkage group 23, complete sequence Length = 107132 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagacagg 28 |||||||||||||| ||||||||||||| Sbjct: 69272 acacacacagacag-acagacagacagg 69246
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 3307734 cgccgccgcggcgagggcgg 3307715
>gb|AC156949.9| Mus musculus 10 BAC RP24-347J14 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 149183 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 acacacagacagaacagacagaca 26 |||||||||||||||| ||||||| Sbjct: 27665 acacacagacagaacacacagaca 27642
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 25833863 cgccgccgcggcgagggcgg 25833844
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acacacagacagaacagaca 22 |||||||||||||||||||| Sbjct: 21873055 acacacagacagaacagaca 21873074
>gb|AF497482.1| Micromonospora echinospora calicheamicin biosynthetic locus, complete sequence Length = 90348 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 204 gctcgccatcgagctcgccg 223 |||||||||||||||||||| Sbjct: 19369 gctcgccatcgagctcgccg 19388
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcg 140 |||||||||||||||||||| Sbjct: 2533868 gcggcgggggccgggccgcg 2533887 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 252 gctcgccggcacccggctca 271 |||||||||||||||||||| Sbjct: 1261777 gctcgccggcacccggctca 1261796
>gb|AC012442.7| Homo sapiens BAC clone RP11-1I24 from 2, complete sequence Length = 173040 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 gcggcgggggccgggccgcg 140 |||||||||||||||||||| Sbjct: 35663 gcggcgggggccgggccgcg 35682
>dbj|AP005195.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0567H04 Length = 181420 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 tcgccgtgggcgcgctcttc 171 |||||||||||||||||||| Sbjct: 105972 tcgccgtgggcgcgctcttc 105953
>dbj|AP002838.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22 Length = 101666 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccatcgagctcgccgtcgacgacg 232 |||||||| ||||||||||||||| Sbjct: 21131 ccatcgagttcgccgtcgacgacg 21108
>dbj|AP001168.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0425F02 Length = 176979 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 209 ccatcgagctcgccgtcgacgacg 232 |||||||| ||||||||||||||| Sbjct: 122384 ccatcgagttcgccgtcgacgacg 122361
>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18 Length = 80099 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 333 aatggagaaaaatgtagttgctgttatt 360 |||||||||||||||| |||||| |||| Sbjct: 18091 aatggagaaaaatgtatttgctgatatt 18118
>dbj|AK106443.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-D12, full insert sequence Length = 2781 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 1730 cgccgccgcggcgagggcgg 1711
>emb|BX120008.9| Zebrafish DNA sequence from clone CH211-215G18 in linkage group 14, complete sequence Length = 221928 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 gggccgggccgcgtccgagc 147 |||||||||||||||||||| Sbjct: 86032 gggccgggccgcgtccgagc 86051
>gb|AC110042.12| Mus musculus chromosome 1, clone RP23-278C6, complete sequence Length = 170602 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 155748 acacacacagacagagacagacagacag 155721
>gb|AC153824.9| Mus musculus 10 BAC RP23-53D13 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 233119 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 3 acacacagacagaacagacagaca 26 |||||||||||||||| ||||||| Sbjct: 144012 acacacagacagaacacacagaca 143989
>emb|CT025522.17| Mouse DNA sequence from clone RP23-332L23 on chromosome 16, complete sequence Length = 199628 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 115769 acacacacagacagacacagacagacag 115742 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 115681 acacacacagacagacacagacagacag 115654
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 199 gcgcggctcgccatcgagctcgccgtcg 226 ||||||||||| ||||||| |||||||| Sbjct: 875512 gcgcggctcgcgatcgagcccgccgtcg 875485
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 208 gccatcgagctcgccgtcga 227 |||||||||||||||||||| Sbjct: 779930 gccatcgagctcgccgtcga 779911
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 acacacagacagaacagaca 22 |||||||||||||||||||| Sbjct: 22183254 acacacagacagaacagaca 22183273
>gb|AC129222.4| Mus musculus BAC clone RP24-532L14 from 14, complete sequence Length = 181469 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 1 acacacacagacagaacagacagacagg 28 ||||| |||||||| ||||||||||||| Sbjct: 100435 acacagacagacaggacagacagacagg 100408
>gb|AC140321.3| Mus musculus BAC clone RP23-402K6 from 1, complete sequence Length = 215225 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Minus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 49445 acacacacagacagacacagacagacag 49418
>emb|CR450823.9| Zebrafish DNA sequence from clone CH211-241M2 in linkage group 11, complete sequence Length = 73433 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 40133 acacacacagacagacacagacagacag 40160 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 33925 acacacacagacagacacagacagacag 33952
>gb|DQ065837.1| Burkholderia cepacia strain 2a plasmid pIJB1, complete sequence Length = 99448 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 192 ccgcgcggcgcggctcgcca 211 |||||||||||||||||||| Sbjct: 70954 ccgcgcggcgcggctcgcca 70935
>emb|AL607066.23| Mouse DNA sequence from clone RP23-406N5 on chromosome 4, complete sequence Length = 194837 Score = 40.1 bits (20), Expect = 5.9 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 1 acacacacagacaga-acagacagacag 27 ||||||||||||||| |||||||||||| Sbjct: 129124 acacacacagacagacacagacagacag 129151
>emb|AL606935.8| Mouse DNA sequence from clone RP23-204N19 on chromosome 4, complete sequence Length = 213391 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 cagacagaacagacagacag 27 |||||||||||||||||||| Sbjct: 7901 cagacagaacagacagacag 7920
>gb|AC093921.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0041A22, complete sequence Length = 117919 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cgccgccgcggcgagggcgg 115 |||||||||||||||||||| Sbjct: 28613 cgccgccgcggcgagggcgg 28594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,829,339 Number of Sequences: 3902068 Number of extensions: 3829339 Number of successful extensions: 87355 Number of sequences better than 10.0: 102 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 19 Number of HSP's that attempted gapping in prelim test: 83623 Number of HSP's gapped (non-prelim): 3758 length of query: 436 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 414 effective length of database: 17,147,199,772 effective search space: 7098940705608 effective search space used: 7098940705608 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
