ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl45e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CU57_ARADI (P80519) Adult-specific rigid cuticular protein 15.7 ... 28 7.5
2TONB_PSEAE (Q51368) Protein tonB 27 9.8
3RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote... 27 9.8

>CU57_ARADI (P80519) Adult-specific rigid cuticular protein 15.7 (ACP 15.7)|
          Length = 159

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 156 YRRAAVPLAPAVGARVAGRPPAPEGAHV 239
           Y     P+APAV A V    PA  GAH+
Sbjct: 102 YAPPVAPVAPAVAAPVVAAAPALAGAHL 129



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>TONB_PSEAE (Q51368) Protein tonB|
          Length = 342

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 165 AAVPLAPAVGARVAGRPPAPEGAHVPRGV 251
           AA P AP VG    G   AP G+  P G+
Sbjct: 216 AAPPPAPTVGQSTPGAQTAPSGSQGPAGL 244



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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 2   LILHTPFFRSTDHPPSLPLPHPRVRQWRRP 91
           LI  TP    T HPP LP PHP ++    P
Sbjct: 798 LIQQTP----TLHPPRLPSPHPPLQPMTAP 823


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,078,852
Number of Sequences: 219361
Number of extensions: 363653
Number of successful extensions: 1451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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