ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45e09 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3087 Score = 141 bits (71), Expect = 2e-30 Identities = 127/145 (87%), Gaps = 3/145 (2%) Strand = Plus / Plus Query: 176 cctggcccccgccg---tgggcgcccgcgtggccgggcgaccgccagcgccagagggagc 232 |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct: 143 cctggcccccgccgccccgggcgcccgcgtggccgggcgaccggaggcgccagcgggagc 202 Query: 233 gcatgttccgcgaggagtttgagcgccgccgcatccagcttcgcgagctctgccgagccg 292 || |||||| |||||||| |||||||||||| |||||| |||||||||||||| |||| Sbjct: 203 gcgcgttccgggaggagttcgagcgccgccgccgccagctccgcgagctctgccgcgccg 262 Query: 293 ttcgcgtcgacaccatcgccgagct 317 | |||||||||||| |||||||||| Sbjct: 263 tccgcgtcgacaccgtcgccgagct 287 Score = 52.0 bits (26), Expect = 0.001 Identities = 53/62 (85%) Strand = Plus / Plus Query: 79 atggcgacgaccctggtgagacgtgtggagtcgtgggtgcgggaccaggggtcgcggctg 138 ||||||||| | |||| ||| || || |||||||||| ||||||||||| | |||||||| Sbjct: 1 atggcgacggcgctggcgagccgcgtcgagtcgtgggcgcgggaccaggcggcgcggctg 60 Query: 139 cc 140 || Sbjct: 61 cc 62
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 141 bits (71), Expect = 2e-30 Identities = 127/145 (87%), Gaps = 3/145 (2%) Strand = Plus / Minus Query: 176 cctggcccccgccg---tgggcgcccgcgtggccgggcgaccgccagcgccagagggagc 232 |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct: 16712049 cctggcccccgccgccccgggcgcccgcgtggccgggcgaccggaggcgccagcgggagc 16711990 Query: 233 gcatgttccgcgaggagtttgagcgccgccgcatccagcttcgcgagctctgccgagccg 292 || |||||| |||||||| |||||||||||| |||||| |||||||||||||| |||| Sbjct: 16711989 gcgcgttccgggaggagttcgagcgccgccgccgccagctccgcgagctctgccgcgccg 16711930 Query: 293 ttcgcgtcgacaccatcgccgagct 317 | |||||||||||| |||||||||| Sbjct: 16711929 tccgcgtcgacaccgtcgccgagct 16711905 Score = 56.0 bits (28), Expect = 7e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 77 caatggcgacgaccctggtgagacgtgtggagtcgtgggtgcgggaccaggggtcgcggc 136 ||||||||||| | |||| ||| || || |||||||||| ||||||||||| | |||||| Sbjct: 16712193 caatggcgacggcgctggcgagccgcgtcgagtcgtgggcgcgggaccaggcggcgcggc 16712134 Query: 137 tgcc 140 |||| Sbjct: 16712133 tgcc 16712130
>dbj|AP005820.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0091C16 Length = 162527 Score = 141 bits (71), Expect = 2e-30 Identities = 127/145 (87%), Gaps = 3/145 (2%) Strand = Plus / Minus Query: 176 cctggcccccgccg---tgggcgcccgcgtggccgggcgaccgccagcgccagagggagc 232 |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct: 89104 cctggcccccgccgccccgggcgcccgcgtggccgggcgaccggaggcgccagcgggagc 89045 Query: 233 gcatgttccgcgaggagtttgagcgccgccgcatccagcttcgcgagctctgccgagccg 292 || |||||| |||||||| |||||||||||| |||||| |||||||||||||| |||| Sbjct: 89044 gcgcgttccgggaggagttcgagcgccgccgccgccagctccgcgagctctgccgcgccg 88985 Query: 293 ttcgcgtcgacaccatcgccgagct 317 | |||||||||||| |||||||||| Sbjct: 88984 tccgcgtcgacaccgtcgccgagct 88960 Score = 56.0 bits (28), Expect = 7e-05 Identities = 55/64 (85%) Strand = Plus / Minus Query: 77 caatggcgacgaccctggtgagacgtgtggagtcgtgggtgcgggaccaggggtcgcggc 136 ||||||||||| | |||| ||| || || |||||||||| ||||||||||| | |||||| Sbjct: 89248 caatggcgacggcgctggcgagccgcgtcgagtcgtgggcgcgggaccaggcggcgcggc 89189 Query: 137 tgcc 140 |||| Sbjct: 89188 tgcc 89185
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctca 63 |||||||||||||||||||||||| Sbjct: 12268282 ccctccttccctccctcttcctca 12268259
>dbj|AP002953.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0426D06 Length = 162173 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctca 63 |||||||||||||||||||||||| Sbjct: 92908 ccctccttccctccctcttcctca 92885
>gb|AC163615.5| Mus musculus BAC clone RP23-104L12 from chromosome 8, complete sequence Length = 222950 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctc 62 ||||||||||||||||||||||| Sbjct: 37252 ccctccttccctccctcttcctc 37230
>gb|AC093086.4| Homo sapiens BAC clone RP11-746B14 from 7, complete sequence Length = 64601 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctc 62 ||||||||||||||||||||||| Sbjct: 61894 ccctccttccctccctcttcctc 61872
>gb|AC125487.3| Mus musculus BAC clone RP23-38L16 from 12, complete sequence Length = 222288 Score = 46.1 bits (23), Expect = 0.070 Identities = 26/27 (96%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcctcaccc 66 |||||||||||||| |||||||||||| Sbjct: 103015 ccctccttccctccttcttcctcaccc 103041
>gb|AC121950.2| Mus musculus BAC clone RP24-216M19 from 6, complete sequence Length = 170988 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctcac 64 ||||||||||||||||||||||| Sbjct: 80541 ctccttccctccctcttcctcac 80563
>gb|AC019026.12| Mus musculus chromosome 6 clone RP23-188E5 strain C57BL6/J, complete sequence Length = 157996 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctcac 64 ||||||||||||||||||||||| Sbjct: 4326 ctccttccctccctcttcctcac 4348
>gb|AC140227.7| Mus musculus BAC clone RP24-487N2 from chromosome 8, complete sequence Length = 188262 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctc 62 ||||||||||||||||||||||| Sbjct: 185651 ccctccttccctccctcttcctc 185629
>gb|AC157091.6| Mus musculus 6 BAC RP24-359O2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 206538 Score = 46.1 bits (23), Expect = 0.070 Identities = 23/23 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctcac 64 ||||||||||||||||||||||| Sbjct: 12539 ctccttccctccctcttcctcac 12561
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 201 gtggccgggcgaccgccagcgc 222 |||||||||||||||||||||| Sbjct: 2110415 gtggccgggcgaccgccagcgc 2110436
>gb|AC141888.4| Mus musculus BAC clone RP23-462H3 from chromosome 19, complete sequence Length = 185192 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcctc 62 |||||||||||||||||||||| Sbjct: 138228 cctccttccctccctcttcctc 138207
>gb|AC166167.2| Mus musculus BAC clone RP23-211D22 from chromosome 13, complete sequence Length = 200448 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 36 accaccctccttccctccctct 57 |||||||||||||||||||||| Sbjct: 23003 accaccctccttccctccctct 22982
>gb|AC133176.2| Mus musculus BAC clone RP24-111D1 from chromosome 14, complete sequence Length = 171069 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcct 61 |||||||||||||||||||||| Sbjct: 52108 ccctccttccctccctcttcct 52129
>emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production genes Length = 36270 Score = 44.1 bits (22), Expect = 0.27 Identities = 25/26 (96%) Strand = Plus / Minus Query: 295 cgcgtcgacaccatcgccgagctgca 320 ||||| |||||||||||||||||||| Sbjct: 33119 cgcgtagacaccatcgccgagctgca 33094
>gb|AC159210.2| Mus musculus BAC clone RP23-54F9 from chromosome 13, complete sequence Length = 228429 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 36 accaccctccttccctccctct 57 |||||||||||||||||||||| Sbjct: 118408 accaccctccttccctccctct 118429
>gb|AC167812.4| Mus musculus BAC clone RP24-299F5 from chromosome 18, complete sequence Length = 193523 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 148038 ctccttccctccctcttcctc 148058
>ref|XM_463047.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1284 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 29 ctccttccctccctcttcctc 9
>ref|XM_463048.3| Oryza sativa (japonica cultivar-group), mRNA Length = 1739 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 137 ctccttccctccctcttcctc 117
>gb|AY022163.1| Oryza sativa microsatellite MRG4488 containing (TC)X23, closest to marker C816, genomic sequence Length = 246 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 42 ctccttccctccctcttcctc 62
>gb|AC112361.5| Rattus norvegicus 9 BAC CH230-61F12 (Children's Hospital Oakland Research Institute) complete sequence Length = 216648 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 9140 ccctccttccctccctcttcc 9160
>gb|AC148244.3| Mus musculus chromosome 9, clone wi1-65440F10, complete sequence Length = 41220 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 34923 ccaccctccttccctccctct 34943
>gb|AC102420.10| Mus musculus chromosome 8, clone RP24-553O21, complete sequence Length = 178616 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 ggaccaccctccttccctccc 54 ||||||||||||||||||||| Sbjct: 148446 ggaccaccctccttccctccc 148466
>gb|AC147047.2| Mus musculus BAC clone RP23-97D19 from chromosome 6, complete sequence Length = 239653 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 166108 ccctccttccctccctcttcc 166088
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 21200907 ctccttccctccctcttcctc 21200887
>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete sequence Length = 174910 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 56822 ctccttccctccctcttcctc 56802
>gb|AY509906.1| Homo sapiens interleukin 26 (IL26) gene, complete cds Length = 33991 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 8662 ccaccctccttccctccctct 8682
>ref|XM_383479.1| Gibberella zeae PH-1 chromosome 2 hypothetical protein (FG03303.1) partial mRNA Length = 921 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 305 ccatcgccgagctgcaagagc 325 ||||||||||||||||||||| Sbjct: 173 ccatcgccgagctgcaagagc 193
>gb|AC131700.3| Mus musculus BAC clone RP24-67N3 from chromosome 6, complete sequence Length = 197050 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 56565 ccctccttccctccctcttcc 56545
>gb|AC130816.4| Mus musculus BAC clone RP23-52D16 from chromosome 6, complete sequence Length = 111111 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 102580 ccctccttccctccctcttcc 102600
>gb|AC121982.3| Mus musculus BAC clone RP24-291D6 from chromosome 6, complete sequence Length = 167409 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 166763 ctccttccctccctcttcctc 166743
>emb|AL929423.4| Human DNA sequence from clone RP11-474F9 on chromosome 10, complete sequence Length = 22919 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 2432 ccctccttccctccctcttcc 2452 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 2412 ccctccttccctccctcttcc 2432 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 2392 ccctccttccctccctcttcc 2412
>gb|AC164290.4| Mus musculus BAC clone RP23-385O17 from chromosome 18, complete sequence Length = 205629 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 78791 ctccttccctccctcttcctc 78811
>gb|AY993941.1| Microbacterium arborescens strain SE 14 cosmid MAS10D5, complete sequence Length = 33203 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 tcgacaccatcgccgagctgc 319 ||||||||||||||||||||| Sbjct: 22813 tcgacaccatcgccgagctgc 22793
>gb|AC034229.4| Homo sapiens chromosome 5 clone CTD-2199O4, complete sequence Length = 145918 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 110743 ctccttccctccctcttcctc 110763
>emb|AL928617.13| Mouse DNA sequence from clone RP23-326E21 on chromosome 2, complete sequence Length = 190652 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 90423 ccaccctccttccctccctct 90443
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 21193936 ctccttccctccctcttcctc 21193916
>gb|AC007458.14| Homo sapiens 12 BAC RP11-444B24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 190961 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 163901 ccaccctccttccctccctct 163881
>dbj|AK120119.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013025N19, full insert sequence Length = 1284 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 29 ctccttccctccctcttcctc 9
>emb|AJ335108.1|HSA335108 Homo sapiens genomic sequence surrounding NotI site, clone NR5-DM14R Length = 833 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 226 ctccttccctccctcttcctc 206
>emb|AJ329181.1|HSA329181 Homo sapiens genomic sequence surrounding NotI site, clone NR1-KK21R Length = 776 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 226 ctccttccctccctcttcctc 206
>emb|Z97200.1|HS79C4 Human DNA sequence from clone RP1-79C4 on chromosome 1q24, complete sequence Length = 158549 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 115817 ctccttccctccctcttcctc 115797
>dbj|AK070707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063J02, full insert sequence Length = 1745 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 143 ctccttccctccctcttcctc 123
>emb|AL512542.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0522A01, complete sequence Length = 97077 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 302 acaccatcgccgagctgcaag 322 ||||||||||||||||||||| Sbjct: 40362 acaccatcgccgagctgcaag 40342
>emb|AJ251550.1|HSA251550 Homo sapiens partial AK155 gene for AK155 protein, exons 1-3 and joined CDS Length = 6839 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 2558 ccaccctccttccctccctct 2578
>emb|BX005269.4| Zebrafish DNA sequence from clone CH211-160L17 in linkage group 2, complete sequence Length = 185170 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 35292 ccctccttccctccctcttcc 35312
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 ccgtgggcgcccgcgtggccg 207 ||||||||||||||||||||| Sbjct: 1133561 ccgtgggcgcccgcgtggccg 1133581
>emb|AL935152.9| Mouse DNA sequence from clone RP24-387M5 on chromosome 2, complete sequence Length = 98020 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcctcac 64 |||||||||||||||||| |||||| Sbjct: 43129 ccctccttccctccctctccctcac 43153
>gb|AC144774.3| Mus musculus BAC clone RP24-128I18 from 6, complete sequence Length = 143838 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcctc 62 ||||||||||||||||||||| Sbjct: 56097 ctccttccctccctcttcctc 56077
>gb|AC125210.4| Mus musculus BAC clone RP23-148P22 from 18, complete sequence Length = 210193 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 38 caccctccttccctccctcttcctcaccc 66 |||||||||||||||||| ||||||||| Sbjct: 27960 caccctccttccctcccttctcctcaccc 27932
>gb|AC110817.6| Mus musculus BAC clone RP23-155B20 from 13, complete sequence Length = 200362 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 58726 ccctccttccctccctcttcc 58706
>emb|AL954131.8| Mouse DNA sequence from clone RP23-32H12 on chromosome 2, complete sequence Length = 162456 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 810 ccctccttccctccctcttcc 790
>emb|AL607041.18| Mouse DNA sequence from clone RP23-434K11 on chromosome 11, complete sequence Length = 198761 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 12532 ccctccttccctccctcttcc 12512
>emb|AL845498.9| Mouse DNA sequence from clone RP23-222D20 on chromosome 2, complete sequence Length = 154935 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcc 60 ||||||||||||||||||||| Sbjct: 153745 ccctccttccctccctcttcc 153725
>emb|AL663062.7| Mouse DNA sequence from clone RP23-401I8 on chromosome 2, complete sequence Length = 191638 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctct 57 ||||||||||||||||||||| Sbjct: 28807 ccaccctccttccctccctct 28787
>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence Length = 211052 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 136365 ccaccctccttccctccctc 136384
>gb|AC164878.2| Mus musculus BAC clone RP23-364G24 from chromosome 13, complete sequence Length = 181893 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 117917 ccaccctccttccctccctc 117898
>gb|AC161519.11| Mus musculus chromosome 18, clone RP24-83L9, complete sequence Length = 233631 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 146471 ccctccttccctccctcttc 146452
>gb|AC166162.6| Mus musculus BAC clone RP23-436K10 from chromosome 6, complete sequence Length = 181038 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 63472 ctccttccctccctcttcct 63453
>gb|AC113590.11| Mus musculus chromosome 5, clone RP23-277L17, complete sequence Length = 171727 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tccttccctccctcttcctc 62 |||||||||||||||||||| Sbjct: 101992 tccttccctccctcttcctc 101973
>gb|AC164700.3| Mus musculus BAC clone RP24-548M16 from chromosome 5, complete sequence Length = 212172 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 58061 ctccttccctccctcttcct 58042
>gb|AC148825.4| Pan troglodytes BAC clone CH251-539J12 from chromosome 7, complete sequence Length = 181673 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 84625 ccaccctccttccctccctc 84644
>gb|AC186003.3| Pan troglodytes BAC clone CH251-72E16 from chromosome 5, complete sequence Length = 191785 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcctcac 64 |||||| ||||||||||||||||| Sbjct: 120818 cctcctgccctccctcttcctcac 120795
>gb|BC008100.1| Homo sapiens retinal outer segment membrane protein 1, mRNA (cDNA clone MGC:17106 IMAGE:4177529), complete cds Length = 1477 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 1221 tccctccctcttcctcaccc 1202
>gb|AC129573.16| Mus musculus chromosome 6, clone RP23-457B5, complete sequence Length = 178159 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 81526 ctccttccctccctcttcct 81507
>gb|AC125361.4| Mus musculus BAC clone RP23-93M7 from chromosome 12, complete sequence Length = 202234 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 98935 ccctccttccctccctcttc 98916
>gb|AC161280.2| Pan troglodytes BAC clone CH251-392H4 from chromosome 7, complete sequence Length = 190939 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 33260 ctccttccctccctcttcct 33241
>gb|AC161123.3| Pan troglodytes BAC clone CH251-618D5 from chromosome 7, complete sequence Length = 190856 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 98182 ctccttccctccctcttcct 98163
>ref|NM_000327.2| Homo sapiens retinal outer segment membrane protein 1 (ROM1), mRNA Length = 1477 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 1221 tccctccctcttcctcaccc 1202
>gb|AC118639.12| Mus musculus chromosome 15, clone RP24-112I4, complete sequence Length = 166053 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 52014 ccaccctccttccctccctc 52033
>gb|AC159624.2| Mus musculus BAC clone RP24-270G2 from chromosome 12, complete sequence Length = 187364 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttgcatactcccttcttcc 26 |||||||||||||||||||| Sbjct: 182186 cttgcatactcccttcttcc 182205
>gb|AC073308.4| Homo sapiens BAC clone RP11-13M3 from 7, complete sequence Length = 154344 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 48582 ccaccctccttccctccctc 48601
>ref|XM_846286.1| PREDICTED: Canis familiaris hypothetical protein LOC609082 (LOC609082), mRNA Length = 2112 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 184 ccgccgtgggcgcccgcgtg 203 |||||||||||||||||||| Sbjct: 247 ccgccgtgggcgcccgcgtg 266
>gb|AC135892.1| Homo sapiens 12 BAC RP11-433J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 56520 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 13043 ctccttccctccctcttcct 13062
>gb|AC098716.2| Mus musculus BAC clone RP23-2F19 from 9, complete sequence Length = 214654 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 108693 ccaccctccttccctccctc 108712
>gb|AC005631.4| Homo sapiens PAC clone RP5-1129J21 from 7, complete sequence Length = 143773 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 44934 ccaccctccttccctccctc 44915
>gb|AC159140.10| Mus musculus chromosome 7, clone RP24-84I4, complete sequence Length = 202318 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 93881 ccaccctccttccctccctc 93900
>emb|AL607029.17| Human DNA sequence from clone RP11-540F8 on chromosome 10 Contains a CpG island, complete sequence Length = 58176 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 51694 ccaccctccttccctccctc 51713
>emb|AL392083.17| Human DNA sequence from clone RP11-29A19 on chromosome 10 Contains the 3' end of the gene for double-stranded RNA specific adenosine deaminase (ADAR3) (FLJ30545 FLJ25034 FLJ36975) and three CpG islands, complete sequence Length = 164741 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 127760 ccctccttccctccctcttc 127779
>emb|AL139389.16| Human DNA sequence from clone RP11-411K7 on chromosome 6 Contains the 3' end of a novel gene, an enhancer of rudimentary homolog (Drosophila)(ERH) pseudogene, the 5' end of a novel gene and a novel gene, complete sequence Length = 156721 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 38 caccctccttccctccctct 57 |||||||||||||||||||| Sbjct: 30226 caccctccttccctccctct 30207
>emb|AL049646.19|HSDJ568F9 Human DNA sequence from clone RP4-568F9 on chromosome 20 Contains the ZNF133 gene for zinc finger protein 133, three novel genes, the 3' end of the C20orf12 gene for chromosome 20 open reading frame 12 and two CpG islands, complete sequence Length = 155432 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 44 ccttccctccctcttcctcaccca 67 ||||||||||||||||||| |||| Sbjct: 114739 ccttccctccctcttcctccccca 114716
>gb|AC158238.2| Mus musculus BAC clone RP23-106F10 from chromosome 9, complete sequence Length = 242356 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 103074 tccctccctcttcctcaccc 103093
>gb|AC163282.3| Mus musculus BAC clone RP23-454I20 from chromosome 12, complete sequence Length = 202583 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 18387 ccctccttccctccctcttc 18368
>dbj|AK127347.1| Homo sapiens cDNA FLJ45419 fis, clone BRHIP3035222 Length = 3932 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 accctccttccctccctctt 58 |||||||||||||||||||| Sbjct: 288 accctccttccctccctctt 307
>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence Length = 180225 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcctcac 64 |||||| ||||||||||||||||| Sbjct: 144362 cctcctgccctccctcttcctcac 144385
>dbj|AP007174.1| Aspergillus oryzae RIB40 genomic DNA, SC103 Length = 1282697 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 77592 ctccttccctccctcttcct 77611
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 ctggcccccgccgtgggcgcccgc 200 ||||||| |||||||||||||||| Sbjct: 1351014 ctggcccgcgccgtgggcgcccgc 1350991
>gb|AC018622.10| Homo sapiens chromosome 8, clone RP11-346M13, complete sequence Length = 187574 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 accaccctccttccctccct 55 |||||||||||||||||||| Sbjct: 32625 accaccctccttccctccct 32644
>gb|AC020900.5| Homo sapiens chromosome 5 clone CTC-506B8, complete sequence Length = 183768 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcctcac 64 |||||| ||||||||||||||||| Sbjct: 120583 cctcctgccctccctcttcctcac 120560
>gb|AC099512.2| Homo sapiens chromosome 5 clone RP11-351K10, complete sequence Length = 161775 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 accaccctccttccctccct 55 |||||||||||||||||||| Sbjct: 47729 accaccctccttccctccct 47748
>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome Length = 3561584 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 tgagcgccgccgcatccagc 271 |||||||||||||||||||| Sbjct: 186170 tgagcgccgccgcatccagc 186151
>gb|AC182475.2| Pan troglodytes BAC clone CH251-196J4 from chromosome 5, complete sequence Length = 147307 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcctcac 64 |||||| ||||||||||||||||| Sbjct: 44877 cctcctgccctccctcttcctcac 44854
>gb|AC154531.2| Mus musculus BAC clone RP23-468B10 from chromosome 14, complete sequence Length = 180565 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 caccctccttccctccctcttcctcacc 65 |||||||||||||||||| | ||||||| Sbjct: 163172 caccctccttccctccctgtccctcacc 163145
>gb|AC154213.3| Mus musculus BAC clone RP24-120I12 from chromosome 14, complete sequence Length = 183773 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 38 caccctccttccctccctcttcctcacc 65 |||||||||||||||||| | ||||||| Sbjct: 33648 caccctccttccctccctgtccctcacc 33621
>gb|AC158126.7| Mus musculus chromosome 5, clone RP24-220P21, complete sequence Length = 166888 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 43 tccttccctccctcttcctc 62 |||||||||||||||||||| Sbjct: 52234 tccttccctccctcttcctc 52215
>gb|AC025839.12| Homo sapiens chromosome 8, clone RP11-370K2, complete sequence Length = 178009 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 28266 ccctccttccctccctcttc 28247
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcctcacccac 68 ||||| ||||||||||||||||| |||| Sbjct: 824826 cctccctccctccctcttcctcatccac 824853
>gb|AC079467.2|AC079467 Homo sapiens chromosome 5 clone RP11-357D18, complete sequence Length = 141591 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 83944 ccaccctccttccctccctc 83925
>gb|AC113484.14| Mus musculus chromosome 8, clone RP23-343H23, complete sequence Length = 176303 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 55763 ccctccttccctccctcttc 55744
>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence Length = 173067 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 tccttccctccctcttcctc 62 |||||||||||||||||||| Sbjct: 30998 tccttccctccctcttcctc 31017
>gb|AC106886.3| Homo sapiens chromosome 16 clone RP11-2C24, complete sequence Length = 207950 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 81463 ccaccctccttccctccctc 81482
>gb|AC093249.4| Homo sapiens chromosome 16 clone RP11-146F11, complete sequence Length = 185664 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 4578 ccaccctccttccctccctc 4559
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 287 gagccgttcgcgtcgacaccatcgccga 314 |||||||||||||||| ||| ||||||| Sbjct: 2096181 gagccgttcgcgtcgagaccgtcgccga 2096208
>gb|AC005075.2|AC005075 Homo sapiens BAC clone CTA-219E16 from 7, complete sequence Length = 118334 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 62671 ctccttccctccctcttcct 62652
>gb|AC006064.10| Homo sapiens 12 PAC RP5-940J5 (Roswell Park Cancer Institute Human PAC Library) complete sequence Length = 172571 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 170041 ctccttccctccctcttcct 170060
>ref|XM_341719.2| PREDICTED: Rattus norvegicus calpain 9 (nCL-4) (Capn9), mRNA Length = 2315 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 accaccctccttccctccct 55 |||||||||||||||||||| Sbjct: 2221 accaccctccttccctccct 2240
>gb|AC020909.9| Homo sapiens chromosome 19 clone CTD-2545M3, complete sequence Length = 100826 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 accctccttccctccctctt 58 |||||||||||||||||||| Sbjct: 87348 accctccttccctccctctt 87329
>emb|BX890639.3| Mouse DNA sequence from clone RP23-290E8 on chromosome X, complete sequence Length = 150029 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 139071 ccctccttccctccctcttc 139090
>gb|AC090952.3| Homo sapiens chromosome 3 clone RP11-588H7 map 3p, complete sequence Length = 189723 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcc 60 |||||||||||||||||||| Sbjct: 146510 cctccttccctccctcttcc 146529
>gb|AC102738.9| Mus musculus chromosome 3, clone RP24-303G10, complete sequence Length = 166697 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttcctca 63 ||||||||||||||||| |||||| Sbjct: 165264 ccctccttccctccctcctcctca 165287
>gb|AC040169.7| Homo sapiens chromosome 16 clone RP11-505K9, complete sequence Length = 212596 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 8287 ccaccctccttccctccctc 8306
>gb|AC131662.4| Mus musculus BAC clone RP23-257H24 from chromosome 7, complete sequence Length = 178528 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 45333 ccaccctccttccctccctc 45352
>dbj|AP005787.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0501E09 Length = 150604 Score = 40.1 bits (20), Expect = 4.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcctcacccac 68 ||||| ||||||||||||||||| |||| Sbjct: 110165 cctccctccctccctcttcctcatccac 110192
>gb|AC008940.3|AC008940 Homo sapiens chromosome 5 clone CTD-2319M24, complete sequence Length = 131975 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 cctccctcttcctcacccac 68 |||||||||||||||||||| Sbjct: 90218 cctccctcttcctcacccac 90199
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 300 cgacaccatcgccgagctgc 319 |||||||||||||||||||| Sbjct: 3560079 cgacaccatcgccgagctgc 3560060
>gb|AC104892.10| Mus musculus chromosome 18, clone RP23-262H4, complete sequence Length = 190380 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 160266 ccctccttccctccctcttc 160285
>emb|AL133454.6|CNS01DV5 Human chromosome 14 DNA sequence BAC R-580E16 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 165159 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 35 gaccaccctccttccctccctctt 58 |||||||||||||||||| ||||| Sbjct: 93782 gaccaccctccttccctcactctt 93805
>gb|AC107633.11| Mus musculus chromosome 12, clone RP23-7P3, complete sequence Length = 202640 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 cttgcatactcccttcttcc 26 |||||||||||||||||||| Sbjct: 12191 cttgcatactcccttcttcc 12210
>gb|AC138677.8| Mus musculus chromosome 8, clone RP23-366O14, complete sequence Length = 208995 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 176316 ccctccttccctccctcttc 176297
>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete sequence Length = 177433 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 22140 tccctccctcttcctcaccc 22121
>gb|AC104548.6| Mus musculus chromosome 5, clone RP24-83N12, complete sequence Length = 214247 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 89562 ctccttccctccctcttcct 89581
>gb|DQ176000.1| Xenopus laevis RPGR ORF15 isoform mRNA, partial cds Length = 1845 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcctcac 64 ||||||||||| |||||||||||| Sbjct: 862 cctccttcccttcctcttcctcac 839
>gb|AC110211.16| Mus musculus chromosome 15, clone RP23-192B21, complete sequence Length = 202844 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 148207 ccaccctccttccctccctc 148188
>gb|AC134529.6| Mus musculus BAC clone RP24-503A2 from chromosome 6, complete sequence Length = 166392 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 134178 ctccttccctccctcttcct 134159
>emb|AL645797.11| Mouse DNA sequence from clone RP23-153J5 on chromosome 11 Contains a novel gene and a CpG island, complete sequence Length = 190784 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcc 60 |||||||||||||||||||| Sbjct: 128862 cctccttccctccctcttcc 128881
>gb|AC133943.3| Mus musculus BAC clone RP24-104D12 from 3, complete sequence Length = 218218 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 40 ccctccttccctccctcttcctca 63 ||||||||||||||||| |||||| Sbjct: 163416 ccctccttccctccctcctcctca 163393
>gb|BC036268.1| Homo sapiens retinal outer segment membrane protein 1, mRNA (cDNA clone IMAGE:4179213) Length = 1437 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 1221 tccctccctcttcctcaccc 1202
>gb|U89514.1|RNU89514 Rattus norvegicus calpain large subunit (nCL-4) mRNA, partial cds Length = 2195 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 accaccctccttccctccct 55 |||||||||||||||||||| Sbjct: 2136 accaccctccttccctccct 2155
>emb|AL807795.7| Mouse DNA sequence from clone RP23-199A9 on chromosome X, complete sequence Length = 152159 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 39 accctccttccctccctcttcctc 62 ||||| |||||||||||||||||| Sbjct: 115498 acccttcttccctccctcttcctc 115475
>emb|AL807830.10| Mouse DNA sequence from clone RP23-303I9 on chromosome 4, complete sequence Length = 79426 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 ctccttccctccctcttcct 61 |||||||||||||||||||| Sbjct: 14180 ctccttccctccctcttcct 14161
>emb|AL713885.1|CNS07YP2 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 330D23 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 181075 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcc 60 |||||||||||||||||||| Sbjct: 63253 cctccttccctccctcttcc 63234
>emb|AL713884.1|CNS07YP1 Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 205M5 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 120637 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 cctccttccctccctcttcc 60 |||||||||||||||||||| Sbjct: 2825 cctccttccctccctcttcc 2806
>emb|AL713841.1|CNS07YOV Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 261D24 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 92785 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cctccttccctccctcttcc 60 |||||||||||||||||||| Sbjct: 57449 cctccttccctccctcttcc 57468
>emb|AL845442.7| Mouse DNA sequence from clone RP23-392D9 on chromosome 2, complete sequence Length = 192013 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 tccctccctcttcctcacccacgc 70 ||||| |||||||||||||||||| Sbjct: 19683 tcccttcctcttcctcacccacgc 19660
>gb|L07894.1|HUMROM1A Human rod outer segment membrane protein 1 (ROM1) mRNA, complete cds Length = 1336 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 1095 tccctccctcttcctcaccc 1076
>gb|M96759.1|HUMROD1X Human rod outer segment membrane protein 1 (ROM1) gene exons 1-3, complete cds Length = 2841 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 tccctccctcttcctcaccc 66 |||||||||||||||||||| Sbjct: 2244 tccctccctcttcctcaccc 2225
>emb|AL606929.13| Mouse DNA sequence from clone RP23-139J21 on chromosome 4, complete sequence Length = 198728 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 2067 ccctccttccctccctcttc 2086
>emb|AL607132.11| Mouse DNA sequence from clone RP23-97J2 on chromosome 4, complete sequence Length = 183108 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 38 caccctccttccctccctct 57 |||||||||||||||||||| Sbjct: 21574 caccctccttccctccctct 21593
>gb|K02781.1|MUSANF Mouse PND gene encoding atrial natriuretic factor, complete cds Length = 1983 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccctccttccctccctcttc 59 |||||||||||||||||||| Sbjct: 1874 ccctccttccctccctcttc 1893
>dbj|D31778.1|TRUGTGPLAA Trimeresurus gramineus gTgPLA4 gene for phospholipase A2, complete cds (exon1-4) Length = 2436 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 ccaccctccttccctccctc 56 |||||||||||||||||||| Sbjct: 1647 ccaccctccttccctccctc 1666 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,336,577 Number of Sequences: 3902068 Number of extensions: 2336577 Number of successful extensions: 94782 Number of sequences better than 10.0: 142 Number of HSP's better than 10.0 without gapping: 142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 93863 Number of HSP's gapped (non-prelim): 919 length of query: 325 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 303 effective length of database: 17,147,199,772 effective search space: 5195601530916 effective search space used: 5195601530916 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
