ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 335 bits (169), Expect = 7e-89 Identities = 218/235 (92%) Strand = Plus / Plus Query: 215 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 274 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 396 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 455 Query: 275 ggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggcc 334 || | ||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct: 456 gggtccatccactacccgcggagcacccccgacatgtggccggggctgatccagaagtcc 515 Query: 335 aaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccgtc 394 |||||||||||||||||||| ||||||||||||||||||||||| | |||||| ||||| Sbjct: 516 aaggacggcggcctggacgtcatcgagacgtacgtcttctgggacattcacgaggccgtc 575 Query: 395 cggngacagtacgacttcgagggcaggaatgacctgntgaggttcgtcaaggccg 449 ||| ||||||||||||||||||||||||| ||||| | |||||||| ||||||| Sbjct: 576 cggggacagtacgacttcgagggcaggaaggacctcgtcaggttcgtgaaggccg 630
>ref|XM_464677.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2190 Score = 176 bits (89), Expect = 4e-41 Identities = 169/196 (86%) Strand = Plus / Plus Query: 217 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 276 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 111 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 170 Query: 277 cttcatccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaa 336 || ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 171 ctccatccactacccgcggagcacccccgagatgtggccggggctgatacagaaggccaa 230 Query: 337 ggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccgtccg 396 |||||||||||| ||||| || |||| |||||||||||| ||| ||||||||||||| Sbjct: 231 ggacggcggcctcgacgtcatccagacctacgtcttctggaacggacacgagcccgtcca 290 Query: 397 gngacagtacgacttc 412 | | |||||| ||||| Sbjct: 291 gggccagtactacttc 306
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 153 bits (77), Expect = 6e-34 Identities = 89/93 (95%) Strand = Plus / Minus Query: 215 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 274 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8172540 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8172481 Query: 275 ggcttcatccactacccgcggagcacccccgac 307 || | |||||||||||||||||||||||||||| Sbjct: 8172480 gggtccatccactacccgcggagcacccccgac 8172448 Score = 129 bits (65), Expect = 9e-27 Identities = 88/96 (91%) Strand = Plus / Minus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| Sbjct: 8172298 atgtggccggggctgatccagaagtccaaggacggcggcctggacgtcatcgagacgtac 8172239 Query: 368 gtcttctgggacgtccacgagcccgtccggngacag 403 |||||||||||| | |||||| |||||||| ||||| Sbjct: 8172238 gtcttctgggacattcacgaggccgtccggggacag 8172203 Score = 61.9 bits (31), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 400 acagtacgacttcgagggcaggaatgacctgntgaggttcgtcaaggccg 449 |||||||||||||||||||||||| ||||| | |||||||| ||||||| Sbjct: 8171644 acagtacgacttcgagggcaggaaggacctcgtcaggttcgtgaaggccg 8171595 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 244 catcgacggcgtgcgccgcgtgctcgtct 272 ||||| ||||| ||||||||||||||||| Sbjct: 31880370 catcgccggcgcgcgccgcgtgctcgtct 31880342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 153 bits (77), Expect = 6e-34 Identities = 89/93 (95%) Strand = Plus / Minus Query: 215 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 274 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8170375 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8170316 Query: 275 ggcttcatccactacccgcggagcacccccgac 307 || | |||||||||||||||||||||||||||| Sbjct: 8170315 gggtccatccactacccgcggagcacccccgac 8170283 Score = 129 bits (65), Expect = 9e-27 Identities = 88/96 (91%) Strand = Plus / Minus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| Sbjct: 8170133 atgtggccggggctgatccagaagtccaaggacggcggcctggacgtcatcgagacgtac 8170074 Query: 368 gtcttctgggacgtccacgagcccgtccggngacag 403 |||||||||||| | |||||| |||||||| ||||| Sbjct: 8170073 gtcttctgggacattcacgaggccgtccggggacag 8170038 Score = 61.9 bits (31), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 400 acagtacgacttcgagggcaggaatgacctgntgaggttcgtcaaggccg 449 |||||||||||||||||||||||| ||||| | |||||||| ||||||| Sbjct: 8169479 acagtacgacttcgagggcaggaaggacctcgtcaggttcgtgaaggccg 8169430 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 244 catcgacggcgtgcgccgcgtgctcgtct 272 ||||| ||||| ||||||||||||||||| Sbjct: 31970886 catcgccggcgcgcgccgcgtgctcgtct 31970858
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 153 bits (77), Expect = 6e-34 Identities = 89/93 (95%) Strand = Plus / Minus Query: 215 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 274 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 103970 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 103911 Query: 275 ggcttcatccactacccgcggagcacccccgac 307 || | |||||||||||||||||||||||||||| Sbjct: 103910 gggtccatccactacccgcggagcacccccgac 103878 Score = 129 bits (65), Expect = 9e-27 Identities = 88/96 (91%) Strand = Plus / Minus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| Sbjct: 103728 atgtggccggggctgatccagaagtccaaggacggcggcctggacgtcatcgagacgtac 103669 Query: 368 gtcttctgggacgtccacgagcccgtccggngacag 403 |||||||||||| | |||||| |||||||| ||||| Sbjct: 103668 gtcttctgggacattcacgaggccgtccggggacag 103633 Score = 61.9 bits (31), Expect = 2e-06 Identities = 45/50 (90%) Strand = Plus / Minus Query: 400 acagtacgacttcgagggcaggaatgacctgntgaggttcgtcaaggccg 449 |||||||||||||||||||||||| ||||| | |||||||| ||||||| Sbjct: 103074 acagtacgacttcgagggcaggaaggacctcgtcaggttcgtgaaggccg 103025
>dbj|AK102756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107B05, full insert sequence Length = 2847 Score = 151 bits (76), Expect = 2e-33 Identities = 158/186 (84%) Strand = Plus / Plus Query: 256 gcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccgacatgtggcc 315 ||||||| | ||| ||||||||| |||||||||||| || ||||||||||| |||||||| Sbjct: 449 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccgagatgtggcc 508 Query: 316 ggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctg 375 || ||||| ||||||||||||||||||||||| |||||| || |||| ||||||||||| Sbjct: 509 ggacctgatccagaaggccaaggacggcggcctcgacgtgatccagacctacgtcttctg 568 Query: 376 ggacgtccacgagcccgtccggngacagtacgacttcgagggcaggaatgacctgntgag 435 | ||| ||||||||| || | | |||||||| ||||| | |||| | |||||| |||| Sbjct: 569 gaacggccacgagccagtgcagggacagtactacttcagcgacaggtacgacctggtgag 628 Query: 436 gttcgt 441 |||||| Sbjct: 629 gttcgt 634
>ref|NM_192994.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2484 Score = 145 bits (73), Expect = 1e-31 Identities = 109/121 (90%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcaga 329 ||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||| ||| Sbjct: 128 tctccggctccatccactacccgaggagcacccccgagatgtggccggatctgatagaga 187 Query: 330 aggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagc 389 ||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||| Sbjct: 188 aggccaaggacggcggcctcgacgtggtgcagacgtacgtcttctggaacggccacgagc 247 Query: 390 c 390 | Sbjct: 248 c 248
>dbj|AK103045.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033117F22, full insert sequence Length = 3186 Score = 145 bits (73), Expect = 1e-31 Identities = 109/121 (90%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcaga 329 ||||||||| ||||||||||||| ||||||||||||| |||||||||| ||||| ||| Sbjct: 241 tctccggctccatccactacccgaggagcacccccgagatgtggccggatctgatagaga 300 Query: 330 aggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagc 389 ||||||||||||||||||| |||||||| ||||||||||||||||| ||| |||||||| Sbjct: 301 aggccaaggacggcggcctcgacgtggtgcagacgtacgtcttctggaacggccacgagc 360 Query: 390 c 390 | Sbjct: 361 c 361
>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full insert sequence Length = 3078 Score = 137 bits (69), Expect = 3e-29 Identities = 87/93 (93%) Strand = Plus / Plus Query: 215 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 274 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 2428 aacgtgacgtacgaccaccgcgctgtggtcatcgacggcgtgcgacgcgtgctcgtctcc 2487 Query: 275 ggcttcatccactacccgcggagcacccccgac 307 || | ||||||||||||||||| |||||||||| Sbjct: 2488 gggtccatccactacccgcggaacacccccgac 2520 Score = 129 bits (65), Expect = 9e-27 Identities = 88/96 (91%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||| Sbjct: 2670 atgtggccggggctgatccagaagtccaaggacggcggcctggacgtcatcgagacgtac 2729 Query: 368 gtcttctgggacgtccacgagcccgtccggngacag 403 |||||||||||| | |||||| |||||||| ||||| Sbjct: 2730 gtcttctgggacattcacgaggccgtccggggacag 2765
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 103 bits (52), Expect = 5e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| ||||||||||||||||||||||| ||||| || |||| ||| Sbjct: 6659401 atgtggccggggctgatacagaaggccaaggacggcggcctcgacgtcatccagacctac 6659342 Query: 368 gtcttctgggacgtccacgagcccgtcc 395 ||||||||| ||| ||||||||||||| Sbjct: 6659341 gtcttctggaacggacacgagcccgtcc 6659314 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 217 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 276 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 6659614 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 6659555 Query: 277 cttcatccactacccgcggagcacccccga 306 || ||||||||||||||||||||||||||| Sbjct: 6659554 ctccatccactacccgcggagcacccccga 6659525
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 103 bits (52), Expect = 5e-19 Identities = 79/88 (89%) Strand = Plus / Minus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 ||||||||||||||||| ||||||||||||||||||||||| ||||| || |||| ||| Sbjct: 93776 atgtggccggggctgatacagaaggccaaggacggcggcctcgacgtcatccagacctac 93717 Query: 368 gtcttctgggacgtccacgagcccgtcc 395 ||||||||| ||| ||||||||||||| Sbjct: 93716 gtcttctggaacggacacgagcccgtcc 93689 Score = 75.8 bits (38), Expect = 1e-10 Identities = 77/90 (85%) Strand = Plus / Minus Query: 217 cgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccgg 276 |||| ||||||||| ||| |||| |||||| ||||| |||||| | ||| ||||||| Sbjct: 93989 cgtgtcgtacgaccgccggtcgctcgtcatcaacggccgccgccgcatcctcctctccgg 93930 Query: 277 cttcatccactacccgcggagcacccccga 306 || ||||||||||||||||||||||||||| Sbjct: 93929 ctccatccactacccgcggagcacccccga 93900
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 |||||||||| ||||| ||||||||||||||||||||||| |||||| || |||| ||| Sbjct: 21898151 atgtggccggacctgatccagaaggccaaggacggcggcctcgacgtgatccagacctac 21898210 Query: 368 gtcttctgggacgtccacgagcc 390 ||||||||| ||| ||||||||| Sbjct: 21898211 gtcttctggaacggccacgagcc 21898233 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 256 gcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccga 306 ||||||| | ||| ||||||||| |||||||||||| || ||||||||||| Sbjct: 21898013 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccga 21898063
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||| Sbjct: 22463153 atgtggccggatctgatagagaaggccaaggacggcggcctcgacgtggtgcagacgtac 22463212 Query: 368 gtcttctgggacgtccacgagcc 390 ||||||||| ||| ||||||||| Sbjct: 22463213 gtcttctggaacggccacgagcc 22463235 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccga 306 ||||||||| ||||||||||||| ||||||||||||| Sbjct: 22462950 tctccggctccatccactacccgaggagcacccccga 22462986 Score = 46.1 bits (23), Expect = 0.098 Identities = 53/63 (84%) Strand = Plus / Plus Query: 330 aggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagc 389 ||||||||||||||||| ||| |||||||| ||||| |||||| ||| |||||||| Sbjct: 37988337 aggccaaggacggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagc 37988396 Query: 390 ccg 392 ||| Sbjct: 37988397 ccg 37988399
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 |||||||||| ||||| ||||||||||||||||||||||| |||||| || |||| ||| Sbjct: 120636 atgtggccggacctgatccagaaggccaaggacggcggcctcgacgtgatccagacctac 120695 Query: 368 gtcttctgggacgtccacgagcc 390 ||||||||| ||| ||||||||| Sbjct: 120696 gtcttctggaacggccacgagcc 120718 Score = 54.0 bits (27), Expect = 4e-04 Identities = 45/51 (88%) Strand = Plus / Plus Query: 256 gcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccga 306 ||||||| | ||| ||||||||| |||||||||||| || ||||||||||| Sbjct: 120498 gcgccgcatcctcatctccggctccatccactaccctcgcagcacccccga 120548
>dbj|AP003546.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672C09 Length = 145655 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||| Sbjct: 87291 atgtggccggatctgatagagaaggccaaggacggcggcctcgacgtggtgcagacgtac 87350 Query: 368 gtcttctgggacgtccacgagcc 390 ||||||||| ||| ||||||||| Sbjct: 87351 gtcttctggaacggccacgagcc 87373 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccga 306 ||||||||| ||||||||||||| ||||||||||||| Sbjct: 87088 tctccggctccatccactacccgaggagcacccccga 87124
>dbj|AP002908.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0013G02 Length = 163419 Score = 93.7 bits (47), Expect = 5e-16 Identities = 74/83 (89%) Strand = Plus / Plus Query: 308 atgtggccggggctgatgcagaaggccaaggacggcggcctggacgtggtcgagacgtac 367 |||||||||| ||||| |||||||||||||||||||||| |||||||| |||||||| Sbjct: 160423 atgtggccggatctgatagagaaggccaaggacggcggcctcgacgtggtgcagacgtac 160482 Query: 368 gtcttctgggacgtccacgagcc 390 ||||||||| ||| ||||||||| Sbjct: 160483 gtcttctggaacggccacgagcc 160505 Score = 58.0 bits (29), Expect = 3e-05 Identities = 35/37 (94%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccga 306 ||||||||| ||||||||||||| ||||||||||||| Sbjct: 160220 tctccggctccatccactacccgaggagcacccccga 160256
>ref|XM_483667.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2877 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/124 (83%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcag- 328 ||||||||| ||||||||||||||||||| | || |||| |||||| | || || ||| Sbjct: 210 tctccggctccatccactacccgcggagcccgccggacacgtggcccgacctcat-cagc 268 Query: 329 aaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgag 388 ||||||||||| |||||||| |||| |||||| |||||||||||| ||| ||| ||| Sbjct: 269 aaggccaaggagggcggcctcaacgtcatcgagagctacgtcttctggaacggccatgag 328 Query: 389 cccg 392 |||| Sbjct: 329 cccg 332
>gb|AY459336.1| Oryza sativa (japonica cultivar-group) clone CL034244.2 R2R3-MYB gene region Length = 65993 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/124 (83%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcag- 328 ||||||||| ||||||||||||||||||| | || |||| |||||| | || || ||| Sbjct: 58634 tctccggctccatccactacccgcggagcccgccggacacgtggcccgacctcat-cagc 58692 Query: 329 aaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgag 388 ||||||||||| |||||||| |||| |||||| |||||||||||| ||| ||| ||| Sbjct: 58693 aaggccaaggagggcggcctcaacgtcatcgagagctacgtcttctggaacggccatgag 58752 Query: 389 cccg 392 |||| Sbjct: 58753 cccg 58756
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/124 (83%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcag- 328 ||||||||| ||||||||||||||||||| | || |||| |||||| | || || ||| Sbjct: 27553597 tctccggctccatccactacccgcggagcccgccggacacgtggcccgacctcat-cagc 27553655 Query: 329 aaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgag 388 ||||||||||| |||||||| |||| |||||| |||||||||||| ||| ||| ||| Sbjct: 27553656 aaggccaaggagggcggcctcaacgtcatcgagagctacgtcttctggaacggccatgag 27553715 Query: 389 cccg 392 |||| Sbjct: 27553716 cccg 27553719
>dbj|AP003912.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1479_B11 Length = 105702 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/124 (83%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcag- 328 ||||||||| ||||||||||||||||||| | || |||| |||||| | || || ||| Sbjct: 35887 tctccggctccatccactacccgcggagcccgccggacacgtggcccgacctcat-cagc 35945 Query: 329 aaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgag 388 ||||||||||| |||||||| |||| |||||| |||||||||||| ||| ||| ||| Sbjct: 35946 aaggccaaggagggcggcctcaacgtcatcgagagctacgtcttctggaacggccatgag 36005 Query: 389 cccg 392 |||| Sbjct: 36006 cccg 36009
>gb|AY280500.2| Sandersonia aurantiaca beta-galactosidase (GAL3) mRNA, partial cds Length = 2618 Score = 63.9 bits (32), Expect = 4e-07 Identities = 121/151 (80%) Strand = Plus / Plus Query: 280 catccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaagga 339 |||||||||||| | ||||| || || |||||||||| ||||| | ||| ||||| Sbjct: 39 catccactacccaagaagcacaccagagatgtggccggacctgatcgacaagtccaagtc 98 Query: 340 cggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccgtccggng 399 ||||||||| ||| | ||||||| |||||||||||||| ||||||||||| | | | | Sbjct: 99 cggcggcctcgacatcatcgagacctacgtcttctgggatctccacgagcccctacaggg 158 Query: 400 acagtacgacttcgagggcaggaatgacctg 430 ||||||||| ||| | || ||||| |||||| Sbjct: 159 acagtacgatttccaagggaggaaggacctg 189
>dbj|AK069066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007A22, full insert sequence Length = 2877 Score = 63.9 bits (32), Expect = 4e-07 Identities = 103/124 (83%), Gaps = 2/124 (1%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtggccggggctgatgcag- 328 ||||||||| ||||||||||||||||||| | || |||| |||||| | || || ||| Sbjct: 210 tctccggctccatccactacccgcggagcccgccggacacgtggcccgacctcat-cagc 268 Query: 329 aaggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgag 388 ||||||||||| |||||||| |||| |||||| |||||||||||| ||| ||| ||| Sbjct: 269 aaggccaaggagggcggcctcaacgtcatcgagagctacgtcttctggaacggccatgag 328 Query: 389 cccg 392 |||| Sbjct: 329 cccg 332
>ref|NM_195853.1| Oryza sativa (japonica cultivar-group) putative beta-galactosidase (OSJNBa0050M22.9), mRNA Length = 2427 Score = 61.9 bits (31), Expect = 2e-06 Identities = 85/103 (82%) Strand = Plus / Plus Query: 246 tcgacggcgtgcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccg 305 ||||||||| ||||||| | || |||| |||| ||| |||||||| |||||||||||| Sbjct: 119 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 178 Query: 306 acatgtggccggggctgatgcagaaggccaaggacggcggcct 348 | |||||||| | |||| ||||||||||||| |||||||| Sbjct: 179 agatgtggcccgatttgatcaagaaggccaaggaaggcggcct 221
>ref|NM_195758.1| Oryza sativa (japonica cultivar-group) putative beta-galactosidase (OSJNBb0008A05.25), mRNA Length = 2475 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 281 atccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaaggac 340 ||||| |||||| |||||||||| || |||||||| | ||||| |||| || ||||| Sbjct: 142 atccattacccgaggagcaccccggagatgtggcctgatctgattaagaaagcaaaggaa 201 Query: 341 ggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 202 ggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 252
>dbj|AB190367.1| Pyrus pyrifolia PpGAL6 mRNA for beta-D-galactosidase, complete cds Length = 3000 Score = 61.9 bits (31), Expect = 2e-06 Identities = 127/159 (79%) Strand = Plus / Plus Query: 218 gtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccggc 277 ||||||||||||||| | |||||||| || ||||| |||| | || | || || ||| Sbjct: 392 gtgacgtacgaccacagagcgctggtgattgacgggaagcgcagggttttggtgtctggc 451 Query: 278 ttcatccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaag 337 | ||| ||||| || || ||||||||||| |||||||||| || || ||||| | || Sbjct: 452 tccattcactatcctcgcagcacccccgagatgtggccggaccttattcagaaatcgaaa 511 Query: 338 gacggcggcctggacgtggtcgagacgtacgtcttctgg 376 ||||| ||| |||||||| ||||||| |||||||||||| Sbjct: 512 gacggaggcttggacgtgatcgagacctacgtcttctgg 550
>dbj|AK119350.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-F02, full insert sequence Length = 2839 Score = 61.9 bits (31), Expect = 2e-06 Identities = 91/111 (81%) Strand = Plus / Plus Query: 281 atccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaaggac 340 ||||| |||||| |||||||||| || |||||||| | ||||| |||| || ||||| Sbjct: 244 atccattacccgaggagcaccccggagatgtggcctgatctgattaagaaagcaaaggaa 303 Query: 341 ggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 304 ggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 354
>dbj|AK102715.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C09, full insert sequence Length = 3192 Score = 60.0 bits (30), Expect = 7e-06 Identities = 110/137 (80%) Strand = Plus / Plus Query: 280 catccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaagga 339 |||||||||||| || ||| |||||| ||||||||| |||| || |||||||||| Sbjct: 440 catccactacccccgcagcgtccccgagatgtggccgaagctggtggccgaggccaagga 499 Query: 340 cggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccgtccggng 399 ||||||| ||| |||||||| ||||| |||||| ||| ||||||||||| || | | Sbjct: 500 cggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagcccgcccaggg 559 Query: 400 acagtacgacttcgagg 416 |||||| ||||||||| Sbjct: 560 ccagtactacttcgagg 576
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 214 caacgtgacgtacgaccaccgcgcgctggtcatcg 248 ||||||||||||||||||||||||| || |||||| Sbjct: 13826415 caacgtgacgtacgaccaccgcgcggtgctcatcg 13826381
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence Length = 3036 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 214 caacgtgacgtacgaccaccgcgcgctggtcatcg 248 ||||||||||||||||||||||||| || |||||| Sbjct: 280 caacgtgacgtacgaccaccgcgcggtgctcatcg 314
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 214 caacgtgacgtacgaccaccgcgcgctggtcatcg 248 ||||||||||||||||||||||||| || |||||| Sbjct: 13780695 caacgtgacgtacgaccaccgcgcggtgctcatcg 13780661
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 214 caacgtgacgtacgaccaccgcgcgctggtcatcg 248 ||||||||||||||||||||||||| || |||||| Sbjct: 142074 caacgtgacgtacgaccaccgcgcggtgctcatcg 142040
>gb|AY280498.1| Sandersonia aurantiaca beta-galactosidase (GAL1) mRNA, complete cds Length = 3301 Score = 52.0 bits (26), Expect = 0.002 Identities = 62/74 (83%) Strand = Plus / Plus Query: 281 atccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaaggac 340 ||||||||||| |||||||| || || |||||||||| || || |||||||| || || Sbjct: 433 atccactacccacggagcacacctgagatgtggccggacctcatccagaaggcgaaagat 492 Query: 341 ggcggcctggacgt 354 |||||| ||||||| Sbjct: 493 ggcggcttggacgt 506
>dbj|AK101399.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037E13, full insert sequence Length = 3441 Score = 52.0 bits (26), Expect = 0.002 Identities = 52/61 (85%) Strand = Plus / Plus Query: 356 gtcgagacgtacgtcttctgggacgtccacgagcccgtccggngacagtacgacttcgag 415 |||||||| ||||| |||||| ||| ||||||||||| || | | |||||| |||||||| Sbjct: 294 gtcgagacctacgtgttctggaacggccacgagcccgcccagggccagtactacttcgag 353 Query: 416 g 416 | Sbjct: 354 g 354
>ref|XM_463519.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2325 Score = 50.1 bits (25), Expect = 0.006 Identities = 91/113 (80%) Strand = Plus / Plus Query: 280 catccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaagga 339 |||||||||||| || ||| |||||| ||||||||| |||| || |||||||||| Sbjct: 174 catccactacccccgcagcgtccccgagatgtggccgaagctggtggccgaggccaagga 233 Query: 340 cggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccg 392 ||||||| ||| |||||||| ||||| |||||| ||| ||||||||||| Sbjct: 234 cggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagcccg 286
>emb|AJ717740.1| Hordeum vulgare betaGAL1 gene, tRNA-Pro pseudogene, ORF_1 pseudogene and tnp2-like1 gene (partial) Length = 10640 Score = 50.1 bits (25), Expect = 0.006 Identities = 91/113 (80%) Strand = Plus / Plus Query: 280 catccactacccgcggagcacccccgacatgtggccggggctgatgcagaaggccaagga 339 ||||||||||||||| ||| ||||||| ||||||| |||| | ||| |||||||| Sbjct: 2169 catccactacccgcgcagcccccccgatatgtggcacaagctgctcaagaccgccaagga 2228 Query: 340 cggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagcccg 392 |||||||| || ||||||| |||||||||||| ||| ||||||||||| Sbjct: 2229 tggcggcctcaacaccatcgagacctacgtcttctggaacgcccacgagcccg 2281
>emb|AJ717742.1| Triticum monococcum gyl-trans gene (partial), tRNA-Pro gene and betaGAL gene, clone 65B32 Length = 10571 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 357 tcgagacgtacgtcttctgggacgtccacgagcccg 392 ||||||| |||||||||||| ||| ||||||||||| Sbjct: 2957 tcgagacctacgtcttctggaacgcccacgagcccg 2992
>dbj|AB086425.1| Pyrus communis PcGAL3 mRNA for pear beta-galactosidase3, complete cds Length = 3085 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 224 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 275 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 180 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 231
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 357 tcgagacgtacgtcttctgggacgtccacgagcccg 392 ||||||||||||| |||||| ||| ||||||||||| Sbjct: 20929154 tcgagacgtacgttttctggaacggccacgagcccg 20929189 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtgg 313 |||||||| |||||||||||| |||||| | ||||| |||||| Sbjct: 20929067 tctccggcgccatccactacccacggagcccgcccgagatgtgg 20929110
>dbj|AB190363.1| Pyrus pyrifolia PpGAL2 mRNA for beta-D-galactosidase, complete cds Length = 3079 Score = 48.1 bits (24), Expect = 0.025 Identities = 45/52 (86%) Strand = Plus / Plus Query: 224 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 275 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 168 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 219
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 357 tcgagacgtacgtcttctgggacgtccacgagcccg 392 ||||||||||||| |||||| ||| ||||||||||| Sbjct: 21243 tcgagacgtacgttttctggaacggccacgagcccg 21278 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtgg 313 |||||||| |||||||||||| |||||| | ||||| |||||| Sbjct: 21156 tctccggcgccatccactacccacggagcccgcccgagatgtgg 21199
>dbj|AK119414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F12, full insert sequence Length = 2998 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 357 tcgagacgtacgtcttctgggacgtccacgagcccg 392 ||||||||||||| |||||| ||| ||||||||||| Sbjct: 355 tcgagacgtacgttttctggaacggccacgagcccg 390 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Plus Query: 270 tctccggcttcatccactacccgcggagcacccccgacatgtgg 313 |||||||| |||||||||||| |||||| | ||||| |||||| Sbjct: 268 tctccggcgccatccactacccacggagcccgcccgagatgtgg 311
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.025 Identities = 24/24 (100%) Strand = Plus / Minus Query: 157 cgcggcggcggccctgctgctcgc 180 |||||||||||||||||||||||| Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A10 Length = 137348 Score = 46.1 bits (23), Expect = 0.098 Identities = 53/63 (84%) Strand = Plus / Plus Query: 330 aggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagc 389 ||||||||||||||||| ||| |||||||| ||||| |||||| ||| |||||||| Sbjct: 69281 aggccaaggacggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagc 69340 Query: 390 ccg 392 ||| Sbjct: 69341 ccg 69343
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0648C09 Length = 107522 Score = 46.1 bits (23), Expect = 0.098 Identities = 53/63 (84%) Strand = Plus / Plus Query: 330 aggccaaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagc 389 ||||||||||||||||| ||| |||||||| ||||| |||||| ||| |||||||| Sbjct: 84613 aggccaaggacggcggcgccgactgcgtcgagacctacgtgttctggaacggccacgagc 84672 Query: 390 ccg 392 ||| Sbjct: 84673 ccg 84675
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 233 cgcgcgctggtcatcgacggcg 254 |||||||||||||||||||||| Sbjct: 4040440 cgcgcgctggtcatcgacggcg 4040419
>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like 2B isoform 2 (LOC485071), mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 170 ctgctgctcgcgctgctctgcctggc 195 ||||||||||| |||||||||||||| Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Minus Query: 120 gcgacaaagcaatggcggccgtcggcaggc 149 ||||||| ||||||||||||| |||||||| Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
>ref|XM_320987.2| Anopheles gambiae str. PEST ENSANGP00000007803 (ENSANGG00000005890), partial mRNA Length = 2178 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 gcagaaggccaaggacggcggc 346 |||||||||||||||||||||| Sbjct: 849 gcagaaggccaaggacggcggc 870
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.39 Identities = 28/30 (93%) Strand = Plus / Plus Query: 158 gcggcggcggccctgctgctcgcgctgctc 187 |||||||||| | ||||||||||||||||| Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
>ref|NM_184908.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 244 catcgacggcgtgcgccgcgtgctcgtct 272 ||||| ||||| ||||||||||||||||| Sbjct: 504 catcgccggcgcgcgccgcgtgctcgtct 532
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cgacggcgtgcgccgcgtgct 267 ||||||||||||||||||||| Sbjct: 2877171 cgacggcgtgcgccgcgtgct 2877191
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 ggcggccctgctgctcgcgct 183 ||||||||||||||||||||| Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus (LOC475144), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 169 cctgctgctcgcgctgctctg 189 ||||||||||||||||||||| Sbjct: 60 cctgctgctcgcgctgctctg 80
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 165 cggccctgctgctcgcgctgctctg 189 ||||| ||||||||||||||||||| Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cgacggcgtgcgccgcgtgct 267 ||||||||||||||||||||| Sbjct: 1055697 cgacggcgtgcgccgcgtgct 1055717
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 gcggcggccctgctgctcgcg 181 ||||||||||||||||||||| Sbjct: 66011 gcggcggccctgctgctcgcg 65991
>gb|AC131374.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0008A05, complete sequence Length = 124366 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Plus Query: 335 aaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 ||||| || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 79361 aaggaaggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 79417
>gb|AC091749.8| Oryza sativa chromosome 10 BAC OSJNBb0008A05 genomic sequence, complete sequence Length = 150465 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Plus Query: 335 aaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 ||||| || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 129826 aaggaaggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 129882
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 tgccgagcgcggcggcggccc 170 ||||||||||||||||||||| Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cggggacgtcggcggcgacc 214 |||||||||||||||||||| Sbjct: 5397202 cggggacgtcggcggcgacc 5397183
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 246 tcgacggcgtgcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccg 305 ||||||||| ||||||| | || |||| |||| ||| |||||||| |||||||||||| Sbjct: 135327 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 135268 Query: 306 a 306 | Sbjct: 135267 a 135267
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 cgacggcgtgcgccgcgtgct 267 ||||||||||||||||||||| Sbjct: 649489 cgacggcgtgcgccgcgtgct 649509
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 246 tcgacggcgtgcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccg 305 ||||||||| ||||||| | || |||| |||| ||| |||||||| |||||||||||| Sbjct: 9501843 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 9501784 Query: 306 a 306 | Sbjct: 9501783 a 9501783 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Plus Query: 335 aaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 ||||| || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 8874754 aaggaaggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 8874810
>dbj|AB004563.1| Terrabacter sp. dbfB, dbfC and orfL(3, 4, 5 and 6) genes involved in the degradation of dibenzofuran, complete cds Length = 8599 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 337 ggacggcggcctggacgtggtcgag 361 |||||||||||| |||||||||||| Sbjct: 3456 ggacggcggcctcgacgtggtcgag 3432
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 51/61 (83%) Strand = Plus / Minus Query: 246 tcgacggcgtgcgccgcgtgctcgtctccggcttcatccactacccgcggagcacccccg 305 ||||||||| ||||||| | || |||| |||| ||| |||||||| |||||||||||| Sbjct: 9507882 tcgacggcgagcgccgcatcgtcatctctggctccattcactaccccaggagcacccccg 9507823 Query: 306 a 306 | Sbjct: 9507822 a 9507822 Score = 42.1 bits (21), Expect = 1.5 Identities = 48/57 (84%) Strand = Plus / Plus Query: 335 aaggacggcggcctggacgtggtcgagacgtacgtcttctgggacgtccacgagccc 391 ||||| || ||||| |||| | ||||||| |||||||||||| ||| ||| |||||| Sbjct: 8879893 aaggaaggtggccttgacgcgatcgagacctacgtcttctggaacggccatgagccc 8879949
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 244 catcgacggcgtgcgccgcgtgctcgtct 272 ||||| ||||| ||||||||||||||||| Sbjct: 81623 catcgccggcgcgcgccgcgtgctcgtct 81595
>dbj|AB000735.1| Nocardioides sp. genes for 2-carboxybenzaldehyde dehydrogenase, trans-2'-carboxybenzalpyruvate hydratase-aldolase and 5 ORFs, complete cds Length = 16775 Score = 42.1 bits (21), Expect = 1.5 Identities = 30/33 (90%) Strand = Plus / Minus Query: 327 agaaggccaaggacggcggcctggacgtggtcg 359 |||||| ||||||||||| |||||||| ||||| Sbjct: 6492 agaaggacaaggacggcgtcctggacgcggtcg 6460
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 gcggcggcggccctgctgct 177 |||||||||||||||||||| Sbjct: 556863 gcggcggcggccctgctgct 556882
>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration inhibitory factor (MIF) variant 1-like mRNA, complete sequence Length = 1030 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 155 agcgcggcggcggccctgctgctc 178 |||||||||||||||| ||||||| Sbjct: 29 agcgcggcggcggccccgctgctc 52
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 gccgagcgcggcggcggccc 170 |||||||||||||||||||| Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 gcaggctgccgagcgcggcg 163 |||||||||||||||||||| Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 167 gccctgctgctcgcgctgct 186 |||||||||||||||||||| Sbjct: 501 gccctgctgctcgcgctgct 482
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 246 tcgacggcgtgcgccgcgtgctcg 269 ||||||||| |||||||||||||| Sbjct: 2867905 tcgacggcgggcgccgcgtgctcg 2867882
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcgacggcgtgcgccgcgtgctcg 269 ||||||||| |||||||||||||| Sbjct: 240579 tcgacggcgggcgccgcgtgctcg 240602
>gb|BT022158.1| Drosophila melanogaster IP01393 full insert cDNA Length = 1790 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 660 ggacggcggcctggacgtgg 679
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 cggccctgctgctcgcgctg 184 |||||||||||||||||||| Sbjct: 2534797 cggccctgctgctcgcgctg 2534816 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 253 cgtgcgccgcgtgctcgtctccgg 276 ||||||||||||||||||| |||| Sbjct: 629266 cgtgcgccgcgtgctcgtcgccgg 629289
>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence Length = 187495 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 ggccctgctgctcgcgctgctctg 189 |||||||||||||| ||||||||| Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 ggtcatcgacggcgtgcgcc 260 |||||||||||||||||||| Sbjct: 528503 ggtcatcgacggcgtgcgcc 528484
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcgacggcgtgcgccgcgtgctcg 269 ||||||||| |||||||||||||| Sbjct: 17799 tcgacggcgggcgccgcgtgctcg 17822
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 cggcggcctggacgtggtcg 359 |||||||||||||||||||| Sbjct: 206036 cggcggcctggacgtggtcg 206017
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 226 cgaccaccgcgcgctggtcatcga 249 ||||||||||||||||||| |||| Sbjct: 247788 cgaccaccgcgcgctggtcgtcga 247811
>emb|AJ276705.1|DME276705 Drosophila melanogaster mRNA for homeobrain protein Length = 1814 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 686 ggacggcggcctggacgtgg 705
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctgccgagcgcggcggcggc 168 |||||||||||||||||||| Sbjct: 590 ctgccgagcgcggcggcggc 571
>ref|NM_176240.1| Drosophila melanogaster homeobrain CG33152-RA (hbn), mRNA Length = 1802 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 688 ggacggcggcctggacgtgg 707
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 195 cggggacgtcggcggcgacc 214 |||||||||||||||||||| Sbjct: 6117 cggggacgtcggcggcgacc 6098
>gb|AF261693.1|AF261693 Rubus alceifolius microsatellite CIRRIV2A8 sequence Length = 501 Score = 40.1 bits (20), Expect = 6.1 Identities = 56/68 (82%) Strand = Plus / Plus Query: 224 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccggcttcatc 283 ||||||||||| || ||| ||||||| ||| |||||| ||||| |||||| | |||| Sbjct: 426 tacgaccaccgagctctgatcatcgatggcaaccgccgcatgctcatctccgccggcatc 485 Query: 284 cactaccc 291 |||||||| Sbjct: 486 cactaccc 493
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase, putative outer membrane protein OprM precursor (toxI), probable RND efflux transporter (toxH), probable RND efflux membrane-fusion protein precursor (toxG), hypothetical protein (toxF), LysR type regulatory protein (toxR), putative ubiquinone/menaquinone biosynthesis methyltransferase (toxA), putative GTP cyclohydrolase II (toxB), WD repeat portein (toxC), hypothetical protein (toxD), putative deaminase (toxE), and putative transposase genes, complete cds Length = 16987 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gcggcggccctgctgctcgc 180 |||||||||||||||||||| Sbjct: 3749 gcggcggccctgctgctcgc 3730
>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144883 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctgccgagcgcggcggcggc 168 |||||||||||||||||||| Sbjct: 31445 ctgccgagcgcggcggcggc 31426
>gb|AC008289.5|AC008289 Drosophila melanogaster, chromosome 2R, region 57B-57B, BAC clone BACR04E05, complete sequence Length = 163012 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 4723 ggacggcggcctggacgtgg 4742
>gb|AC007888.7|AC007888 Drosophila melanogaster, chromosome 2R, region 57B6-57B13, BAC clone BACR10P11, complete sequence Length = 164035 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 77504 ggacggcggcctggacgtgg 77523
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gcggcggccctgctgctcgc 180 |||||||||||||||||||| Sbjct: 72763 gcggcggccctgctgctcgc 72744
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 250 cggcgtgcgccgcgtgctcg 269 |||||||||||||||||||| Sbjct: 361626 cggcgtgcgccgcgtgctcg 361607
>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 ctgccgagcgcggcggcggc 168 |||||||||||||||||||| Sbjct: 212 ctgccgagcgcggcggcggc 193
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 192 tggcggggacgtcggcggcg 211 |||||||||||||||||||| Sbjct: 4413242 tggcggggacgtcggcggcg 4413261
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 150 tgccgagcgcggcggcggcc 169 |||||||||||||||||||| Sbjct: 749571 tgccgagcgcggcggcggcc 749590
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcgacggcgtgcgccgcgtgctcg 269 ||||||||| |||||||||||||| Sbjct: 13008 tcgacggcgggcgccgcgtgctcg 13031
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 tgtggccggggctgatgcag 328 |||||||||||||||||||| Sbjct: 1346474 tgtggccggggctgatgcag 1346455
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 ggacggcggcctggacgtgg 356 |||||||||||||||||||| Sbjct: 173764 ggacggcggcctggacgtgg 173745
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 246 tcgacggcgtgcgccgcgtgctcg 269 ||||||||| |||||||||||||| Sbjct: 17735 tcgacggcgggcgccgcgtgctcg 17758
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 gcggcggccctgctgctcgc 180 |||||||||||||||||||| Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 gccctgctgctcgcgctgct 186 |||||||||||||||||||| Sbjct: 25565 gccctgctgctcgcgctgct 25584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,940,555 Number of Sequences: 3902068 Number of extensions: 2940555 Number of successful extensions: 64449 Number of sequences better than 10.0: 100 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58797 Number of HSP's gapped (non-prelim): 5642 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
