>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 30.8 bits (68), Expect = 0.85
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = -2

Query: 184 ALQPWQPSPSTSQRG---VPLLLRARRKPSRGAKSPS 83
           A+ PW+PSPS ++     VP+L  +  KPS    SPS
Sbjct: 75  AIAPWEPSPSPTETAWTVVPVLKSSALKPSTVQFSPS 111

>RIMB1_HUMAN (O95153) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (Peripheral benzodiazepine receptor-interacting
            protein) (PBR-IP) (RIM-binding protein 1) (RIM-BP1)
          Length = 1857

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +1

Query: 187  RALLAARYSPRGELAAAILSPARRVDSPHSLPAERGCP 300
            R ++    SP GE A +I +P     +P SLPA   CP
Sbjct: 1053 REVVVRTMSPHGESADSIPAPITPALAPASLPARVSCP 1090

>B3A2_MOUSE (P13808) Anion exchange protein 2 (Non-erythroid band 3-like|
           protein) (AE2 anion exchanger) (Solute carrier family 4
           member 2) (B3RP)
          Length = 1237

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 175 PWQPSPSTSQRGVPLLLR----ARRKPSRGAKSPSRQ 77
           P QPSP+T+   V   L+    A RKP R + SP  Q
Sbjct: 140 PQQPSPATTPSAVQFFLQEDEGAERKPERTSPSPPTQ 176

>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +1

Query: 232 AAILSPARRVDSPHSLPAERGCPRFLVPRRGAGSLASE 345
           AA++S  RR   P + P ERG P   VP R A +  S+
Sbjct: 96  AAVVSLLRRFSLPPTAPGERGTP--AVPARAAAARCSQ 131

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated|
           transcript 2)
          Length = 2161

 Score = 25.0 bits (53), Expect(2) = 4.9
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 246 GEDRGRKLAARGVAGGEEGP 187
           G + GRK  ARGV GG +GP
Sbjct: 899 GPEAGRK-PARGVGGGGQGP 917



 Score = 21.6 bits (44), Expect(2) = 4.9
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -2

Query: 172 WQPSPSTSQRGVP 134
           W P P + +RG+P
Sbjct: 930 WGPRPGSCRRGIP 942

>PRTP_HCMVA (P16724) Probable processing and transport protein UL56 (HFLF0|
           protein)
          Length = 850

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 178 QPWQPS--PSTSQRGVPLLLRARRKPSRGAKS 89
           +PW PS  PS+S  GV   +RA RK  R A S
Sbjct: 799 RPWLPSPYPSSSTAGVSRRVRATRKRPRRASS 830

>CLIC6_HUMAN (Q96NY7) Chloride intracellular channel 6|
          Length = 704

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
 Frame = -3

Query: 261 DAPGGGEDRGRKLAARGVAGGE---EGPARSNHGSHLPQ 154
           +A GGG DRG +  ARG  G     E    +  G+ +PQ
Sbjct: 59  EAGGGGPDRGPEAEARGTRGAHGETEAEEGAPEGAEVPQ 97

>NOTC2_RAT (Q9QW30) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            [Contains: Notch 2 extracellular truncation; Notch 2
            intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 327  SASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRKLAARGVAGGEEGPARSNHGSHLPQP 151
            S   W+  +  S+  W  V     PGGG             GG+ GP     G+H+ +P
Sbjct: 2421 SPDQWSSSSPHSASDWSDVTTSPTPGGG------------GGGQRGP-----GTHMSEP 2462

>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 16/59 (27%), Positives = 23/59 (38%)
 Frame = -3

Query: 327  SASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRKLAARGVAGGEEGPARSNHGSHLPQP 151
            S   W+  +  S+  W  V     PGGG             GG+ GP     G+H+ +P
Sbjct: 2420 SPDQWSSSSPHSASDWSDVTTSPTPGGG------------GGGQRGP-----GTHMSEP 2461

>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)|
           (Transcriptional coactivator Aly/REF) (bZIP-enhancing
           factor BEF)
          Length = 256

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 252 GGGEDRGRKLAARGVAGGEEGPARSNHG 169
           GGG  RGR  +  G  GG +  AR N G
Sbjct: 23  GGGRGRGRAGSQGGRGGGAQAAARVNRG 50

>FBRL_GIALA (Q24957) Fibrillarin|
          Length = 327

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -3

Query: 270 RRIDAPGGGEDRGRKLAARGVAGGEEGPARSNHG 169
           RR   P GG DRG +   R   GG  GP     G
Sbjct: 54  RRGSGPPGGPDRGDRRGPRDGPGGRGGPGGPGGG 87

>DLGP3_HUMAN (O95886) Disks large-associated protein 3 (DAP-3)|
           (SAP90/PSD-95-associated protein 3) (SAPAP3)
           (PSD-95/SAP90-binding protein 3)
          Length = 979

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -3

Query: 264 IDAPGGGEDRGRKLAARGVAGGEEGPARSNHGSH 163
           ++APG  +  G K   RG +GG+  P   + G H
Sbjct: 187 LEAPGKRDYNGPKAEGRGGSGGDSYPGPGSGGPH 220

>CLIC6_RABIT (Q9N2G5) Chloride intracellular channel 6 (Parchorin)|
          Length = 637

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
 Frame = -3

Query: 276 TVRRIDA-----PGGGEDRGRKLAARGVAGGEEGPA--RSNHGSHLPQPLSAA 139
           T R +DA      GG  D G  + A G AGG  G      + G+  PQP S A
Sbjct: 220 TGRNVDAGGSIDAGGSVDAGGSMDAEGPAGGAHGAGGEPQDLGAGSPQPRSEA 272

>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)|
          Length = 607

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 261 DAPGGGEDRGRKLAARGVAGGEEGPARSNHGSHLPQPLSA 142
           +A G  +D G    +RG   GE+G +  + G+ LP P  A
Sbjct: 45  EAAGAVDDGG---CSRGGGAGEKGSSEGDEGAALPPPAGA 81

>LPXK_IDILO (Q5QU37) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 329

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
 Frame = +1

Query: 178 GARRALLAARYSPRGELAAAIL---SPARRVDSPHSLPAERGCPRFLVPRRG-AGSLASE 345
           G    +++  Y  +G     +L   SP +  D P  +    GCP  + P+R  A  L +E
Sbjct: 79  GWNPGIISRGYGAKGPFPYEVLESDSPEKAGDEPLLMRRRTGCPVVIAPKRAQAAKLMAE 138

Query: 346 Q 348
           Q
Sbjct: 139 Q 139

>GALT3_CAEEL (P34678) Polypeptide N-acetylgalactosaminyltransferase 3 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           3) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 3) (pp-GaNTase 3)
           (GalNAc-T1)
          Length = 612

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -3

Query: 333 TASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRKLAARGVAGG 199
           TAS +TW       +F W  V + +    G DR   +    +AGG
Sbjct: 304 TASETTWGGFNWHLNFRWYAVPKRELNRRGSDRSMPIQTPTIAGG 348

>ACVS_NOCLA (P27743) N-(5-amino-5-carboxypentanoyl)-L-cysteinyl-D-valine synthase|
            (EC 6.3.2.26)
            (Delta-(L-alpha-aminoadipyl)-L-cysteinyl-D-valine
            synthetase) (ACV synthetase) (ACVS)
          Length = 3649

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 99   PREGFRRARSSRGTPR*EVEGDGCHGWSAQ 188
            P   F   R++   PR  VE   CH WSAQ
Sbjct: 2896 PSADFSPKRAAYAAPRDRVEARLCHLWSAQ 2925

>MYSB_ACACA (P19706) Myosin heavy chain IB (Myosin heavy chain IL)|
          Length = 1147

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 22/72 (30%), Positives = 29/72 (40%)
 Frame = -3

Query: 336  QTASASTWNQKTRASSFSWKTVRRIDAPGGGEDRGRKLAARGVAGGEEGPARSNHGSHLP 157
            Q   A+   ++T +S  +W         GGG  RG     RG AGG  G      G    
Sbjct: 895  QIGIATGLPKETDSSPPNWTPSGGGGGYGGG--RGGGGGGRGAAGGGRGGFGGGGGGGYS 952

Query: 156  QPLSAACPCCSV 121
            QP++ A P   V
Sbjct: 953  QPVAQAQPVAQV 964


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,298,819
Number of Sequences: 219361
Number of extensions: 752876
Number of successful extensions: 2856
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2855
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)