ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl45e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 268 bits (135), Expect = 1e-68 Identities = 248/286 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388 Query: 190 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 19187508 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcggncgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| || |||||||||| || Sbjct: 19187509 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 19187568 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaacttt 415 || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 19187569 tcccacctctgtcgacgagtcctgggacaatttctttcggaacttt 19187614 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atctttctcctcttcccctc 20 |||||||||||||||||||| Sbjct: 13847316 atctttctcctcttcccctc 13847297
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 268 bits (135), Expect = 1e-68 Identities = 248/286 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330 Query: 190 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 450 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcggncgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| || |||||||||| || Sbjct: 451 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 510 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaacttt 415 || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 511 tcccacctctgtcgacgagtcctgggacaatttctttcggaacttt 556
>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full insert sequence Length = 2576 Score = 268 bits (135), Expect = 1e-68 Identities = 248/286 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320 Query: 190 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 440 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcggncgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| || |||||||||| || Sbjct: 441 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 500 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaacttt 415 || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 501 tcccacctctgtcgacgagtcctgggacaatttctttcggaacttt 546
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 268 bits (135), Expect = 1e-68 Identities = 248/286 (86%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 189 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376 Query: 190 gtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgct 249 | |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436 Query: 250 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 309 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 496 Query: 310 cttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcggncgtgggaggcgga 369 |||||| ||||| ||||||||||||||||| |||||||| ||| || |||||||||| || Sbjct: 497 cttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctga 556 Query: 370 cccgacctccgtcgacgagtcctgggacaacttcttccggaacttt 415 || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 557 tcccacctctgtcgacgagtcctgggacaatttctttcggaacttt 602
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 254 bits (128), Expect = 2e-64 Identities = 248/287 (86%), Gaps = 1/287 (0%) Strand = Plus / Plus Query: 130 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 188 |||||||||| ||| ||||| ||||| || || || |||||||||||| | ||||| || Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909 Query: 189 tgtcgcgcgctccggcgagcccgttcgccggccccgcgccgcggtacttccactcgacgc 248 || |||| |||||||||| ||| || ||||| || ||||| |||||||||||||| || | Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969 Query: 249 tcccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagaca 308 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||| Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgaca 121029 Query: 309 gcttcctcgatgggaccagcagcgtgtacctcgaggagctgcagcggncgtgggaggcgg 368 ||||||| ||||| ||||||||||||||||| |||||||| ||| || |||||||||| | Sbjct: 121030 gcttccttgatggcaccagcagcgtgtaccttgaggagctccagagggcgtgggaggctg 121089 Query: 369 acccgacctccgtcgacgagtcctgggacaacttcttccggaacttt 415 | || ||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 121090 atcccacctctgtcgacgagtcctgggacaatttctttcggaacttt 121136
>ref|XM_479634.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3554 Score = 131 bits (66), Expect = 2e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 334 gtacctcgaggagctgcagcggncgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| | |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 535 ggacaacttcttccgcaactt 555
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 131 bits (66), Expect = 2e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 29603810 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 29603869 Query: 334 gtacctcgaggagctgcagcggncgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| | |||||||| ||||| ||||||||||||| ||||| Sbjct: 29603870 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 29603929 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 29603930 ggacaacttcttccgcaactt 29603950
>dbj|AP005199.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0627E10 Length = 163388 Score = 131 bits (66), Expect = 2e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 130482 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 130541 Query: 334 gtacctcgaggagctgcagcggncgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| | |||||||| ||||| ||||||||||||| ||||| Sbjct: 130542 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 130601 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 130602 ggacaacttcttccgcaactt 130622
>dbj|AK100482.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023097A04, full insert sequence Length = 3554 Score = 131 bits (66), Expect = 2e-27 Identities = 122/141 (86%) Strand = Plus / Plus Query: 274 gccccgcgccgtgccgctctcgcgcctcacagacagcttcctcgatgggaccagcagcgt 333 |||||||||||| ||||| || | || || |||||||||||||| || ||||||||||| Sbjct: 415 gccccgcgccgtcccgctgtccaggcttaccgacagcttcctcgacggcaccagcagcgt 474 Query: 334 gtacctcgaggagctgcagcggncgtgggaggcggacccgacctccgtcgacgagtcctg 393 |||||||||||||| ||||| | |||||||| ||||| ||||||||||||| ||||| Sbjct: 475 ctacctcgaggagctccagcgcgcatgggaggccgacccctcctccgtcgacgaatcctg 534 Query: 394 ggacaacttcttccggaactt 414 ||||||||||||||| ||||| Sbjct: 535 ggacaacttcttccgcaactt 555
>dbj|AP006099.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT03D07, TM0180a, complete sequence Length = 76444 Score = 48.1 bits (24), Expect = 0.023 Identities = 33/36 (91%) Strand = Plus / Plus Query: 380 gtcgacgagtcctgggacaacttcttccggaacttt 415 ||||||||||| |||||||| |||||| |||||||| Sbjct: 72161 gtcgacgagtcttgggacaatttcttcaggaacttt 72196
>gb|BC103828.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13, mRNA (cDNA clone IMAGE:40001637), complete cds Length = 2230 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1251 agacagcttcctcgatgggacc 1272
>gb|BC103829.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13, mRNA (cDNA clone IMAGE:40001639), complete cds Length = 2230 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1251 agacagcttcctcgatgggacc 1272
>ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1870 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>ref|XM_528523.1| PREDICTED: Pan troglodytes similar to a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif, 13 isoform 1 preproprotein; chromosome 9 open reading frame 8; von Willebrand factor-cleaving protease (LOC473153), mRNA Length = 4614 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1137 agacagcttcctcgatgggacc 1158
>gb|AY055376.1| Homo sapiens von Willebrand factor-cleaving protease precursor (ADAMTS13) mRNA, complete cds Length = 4597 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1605 agacagcttcctcgatgggacc 1626
>gb|AY358118.1| Homo sapiens clone DNA145839 ADAMTS13 (UNQ6102) mRNA, complete cds Length = 3709 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 709 agacagcttcctcgatgggacc 730
>emb|AJ011374.1|HSA011374 Homo sapiens mRNA for hypothetical protein (C9orf8 gene) Length = 2217 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1131 agacagcttcctcgatgggacc 1152
>emb|AL158826.23| Human DNA sequence from clone RP11-244N20 on chromosome 9 Contains the 5' end of the ABO gene for ABO blood group (transferase A alpha 1-3-N-acetylgalactosaminyltransferase; transferase B alpha 1-3-galactosyltransferase) pseudogene ABO-*O02 allele, the gene for a novel protein similar to lipocalin 1 (protein migrating faster than albumin tear prealbumin) (LCN1), a ribosomal protein L21 (RPL21) pseudogene, the RPL7A gene for ribosomal protein L7a, a novel gene (MGC43306), the XPMC2H gene for Xenopus prevents mitotic catastrophe 2 homolog, the 5' end of the ADAMTS13 gene for a disintegrin-like and metalloprotease (reprolysin type) with thrombospondin type 1 motif 13, the SURF1 gene for surfeit 1, the SURF2 gene for surfeit 2, the SURF4 gene for surfeit 4, the SURF5 gene for surfeit 5, the SURF6 gene for surfeit 6 and eight CpG islands, complete sequence Length = 184513 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 169586 agacagcttcctcgatgggacc 169607
>ref|NM_139027.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 2, mRNA Length = 4765 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>ref|NM_139026.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 3, mRNA Length = 4672 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1848 agacagcttcctcgatgggacc 1869
>ref|NM_139025.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 1, mRNA Length = 4933 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>ref|NM_139028.2| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13), transcript variant 4, mRNA Length = 3346 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 2260 agacagcttcctcgatgggacc 2281
>gb|DQ422807.1| Homo sapiens ADAM metallopeptidase with thrombospondin type 1 motif, 13 (ADAMTS13) gene, complete cds Length = 40955 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 17416 agacagcttcctcgatgggacc 17437
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
>emb|AJ305314.1|HSA305314 Homo sapiens mRNA for ADAMTS-13 protein Length = 4185 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1524 agacagcttcctcgatgggacc 1545
>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence Length = 1873 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ctcttcccctcgcggcggcgtc 31 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>gb|AC002325.1|AC002325 Homo sapiens chromosome 9q34, clone 23B4, complete sequence Length = 44762 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 40094 agacagcttcctcgatgggacc 40073
>gb|AF414401.1| Homo sapiens ADAMTS13 (ADAMTS13) mRNA, complete cds, alternatively spliced Length = 4550 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1558 agacagcttcctcgatgggacc 1579
>dbj|AB069698.2| Homo sapiens vWF-CP(ADAMTS13) mRNA for von Willebrand factor-cleaving protease, complete cds Length = 4950 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1941 agacagcttcctcgatgggacc 1962
>emb|AJ420810.1|HSA420810 Homo sapiens mRNA for ADAMTS-13 protein, variant 2 Length = 4278 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 304 agacagcttcctcgatgggacc 325 |||||||||||||||||||||| Sbjct: 1617 agacagcttcctcgatgggacc 1638
>ref|XM_609891.2| PREDICTED: Bos taurus similar to oxoglutarate dehydrogenase-like (LOC531398), mRNA Length = 4403 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttccggaa 411 |||||||||||| |||||||||||| Sbjct: 953 agtcctgggacagcttcttccggaa 977
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 215 gccggccccgcgccgcggtac 235 ||||||||||||||||||||| Sbjct: 3378810 gccggccccgcgccgcggtac 3378830
>gb|BC114064.1| Bos taurus cDNA clone IMAGE:8163658, with apparent retained intron Length = 3987 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttccggaa 411 |||||||||||| |||||||||||| Sbjct: 258 agtcctgggacagcttcttccggaa 282
>gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Coturnix sp. SP-1993, Genomic, 1513 nt] Length = 1513 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 274 gccccgcgccgtgccgctctc 294 ||||||||||||||||||||| Sbjct: 673 gccccgcgccgtgccgctctc 653
>ref|XM_214261.3| PREDICTED: Rattus norvegicus oxoglutarate dehydrogenase-like (predicted) (Ogdhl_predicted), mRNA Length = 3291 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 agtcctgggacaacttcttcc 407 ||||||||||||||||||||| Sbjct: 461 agtcctgggacaacttcttcc 481
>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 158 ggtttagcccgggtggcgct 177 |||||||||||||||||||| Sbjct: 1111 ggtttagcccgggtggcgct 1130
>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16 Length = 348971 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 213 tcgccggccccgcgccgcgg 232 |||||||||||||||||||| Sbjct: 229143 tcgccggccccgcgccgcgg 229162
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 atctttctcctcttcccctc 20 |||||||||||||||||||| Sbjct: 60975 atctttctcctcttcccctc 60956
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 213 tcgccggccccgcgccgcgg 232 |||||||||||||||||||| Sbjct: 584216 tcgccggccccgcgccgcgg 584197
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tcctcttcccctcgcggcggcgtc 31 |||||||||| ||||||||||||| Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
>gb|CY005851.1| Influenza A virus (A/mallard/Netherlands/12/2000(H7N3)) segment 1, complete sequence Length = 2341 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 320 gggaccagcagcgtgtacctcgaggagctgca 351 ||||| |||||||||||| |||||| |||||| Sbjct: 694 gggacaagcagcgtgtacatcgaggtgctgca 725
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 8 tcctcttcccctcgcggcggcgtc 31 |||||||||| ||||||||||||| Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,902,073 Number of Sequences: 3902068 Number of extensions: 2902073 Number of successful extensions: 54561 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54228 Number of HSP's gapped (non-prelim): 332 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
