>IF38_MEDTR (Q9XHM1) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 935

 Score = 37.7 bits (86), Expect = 0.015
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = +1

Query: 241 MASRFWGQGXXXXXXXXX-XXXXXQGSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSDTE 417
           M SRF+ QG               + SD+E +     G    K++YL     D  D D  
Sbjct: 1   MTSRFFYQGGDQSDTDDEPTDIDDEPSDTEPAPTDPNG----KSKYLAGGNADDSDDDDG 56

Query: 418 SHRVIRSLKDKRNDEM 465
             RV++S KDKR DEM
Sbjct: 57  QKRVVKSAKDKRFDEM 72

>IF38_ARATH (O49160) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c) (p105)
          Length = 900

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
 Frame = +1

Query: 313 GSDSEKS-----EAGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKRNDEM 465
           GS+SE       E  +   D   NRYL   ++D DD+D  + RV++  KDKR +EM
Sbjct: 10  GSESEDESDYEVEVNEVQNDDVNNRYLQSGSEDDDDTD--TKRVVKPAKDKRFEEM 63

>PHC3_MOUSE (Q8CHP6) Polyhomeotic-like protein 3|
          Length = 981

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -1

Query: 355 RVPHHQLLISRYHSLVL-----TRSRPHPPQSHCLPVPKN 251
           +V HHQLL+ +    +      + S+  PP  HC+P+P +
Sbjct: 316 KVSHHQLLLQQQQQQIQPITLQSPSQDPPPSQHCIPLPNH 355

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 403 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVP 257
           HH ++ + S   S +H +P       ++H  ++   +P PPQ   +PVP
Sbjct: 47  HHQIIPVLSQQHSPSHSLP------PQHHIPIMAAQQPAPPQQPVMPVP 89

>MCM7_XENLA (Q91876) DNA replication licensing factor MCM7 (CDC47 homolog)|
           (x.MCM7)
          Length = 720

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +1

Query: 145 NSPFSAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRF 255
           N+  S  +  +P +GR +  KTVE N+Q  AA+ SRF
Sbjct: 478 NARCSILAAANPAYGRYNPKKTVEQNIQLPAALLSRF 514

>IF38_CAEEL (O02328) Probable eukaryotic translation initiation factor 3|
           subunit 8 (eIF3 p110) (eIF3c)
          Length = 898

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = +1

Query: 310 QGSDSEKSEAGDGGRDGSKNRYLNKYTQDSD---DSDTESHRVIRSLKDKRNDEMK 468
           + SDS+ S + D   D   N+   K+  D D     + +  RV+R+ KDK+ DE+K
Sbjct: 9   EDSDSDTSSSEDEVEDQKVNKSA-KFRDDLDFMAGPEEDEKRVVRAQKDKKFDELK 63

>RT23_SCHPO (Q9UR07) Retrotransposable element Tf2 155 kDa protein type 3|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT22_SCHPO (Q9C0R2) Retrotransposable element Tf2 155 kDa protein type 2|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>RT21_SCHPO (Q05654) Retrotransposable element Tf2 155 kDa protein type 1|
          Length = 1333

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 340  QLLISRYHSLVLTRSRPHPPQSHCLPVPKNETPW 239
            Q  +   H+  + +SR H P     P+P +E PW
Sbjct: 951  QEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPW 984

>SYH_PORPU (P51348) Histidyl-tRNA synthetase (EC 6.1.1.21) (Histidine--tRNA|
           ligase) (HisRS)
          Length = 430

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 206 RQLKVIYKQQQPWRLVFGD----RETVTLRRMWTRSSQNKGVIARNQKL 340
           +QLK  +K++    L+ GD    +ET+T++ M+T+  +N  +I    K+
Sbjct: 366 KQLKQAHKKRAIACLILGDNEIQQETITIKWMYTQEQENMSIIEFKNKI 414

>IF38_YEAST (P32497) Eukaryotic translation initiation factor 3 93 kDa subunit|
           (eIF3 p93) (Nuclear transport protein NIP1)
          Length = 812

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 14/64 (21%)
 Frame = +1

Query: 319 DSEKSEAGDGGRD-----------GSKNRYLNKYTQDSDDSDTESH---RVIRSLKDKRN 456
           DS+ S+A   G D           G  N++L     DS D +++     +V++S K+K  
Sbjct: 61  DSDDSDAKPYGPDWFKKSEFRKQGGGSNKFLKSSNYDSSDEESDEEDGKKVVKSAKEKLL 120

Query: 457 DEMK 468
           DEM+
Sbjct: 121 DEMQ 124

>PALH_NEUCR (Q7RY98) pH-response regulator protein palH/rim-21|
          Length = 778

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 313 GSDSEKSEAGDGGRDGSKNRYLNKYTQDSDDSD-TESHRVIRSLKDKRND 459
           GSDS+ +E+G GG+DG  +  L+++   S  S  T  HR   S +++ N+
Sbjct: 411 GSDSQDTESGGGGKDGGPS--LSRFGAWSKISTLTSKHRTEPSSRNEPNE 458

>JAG1A_BRARE (Q90Y57) Jagged-1a precursor (Jagged1a) (Jagged1)|
          Length = 1242

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 475 AVASSHHCACPSTSESRGGSQYQSHHCLVYIC 380
           ++AS ++C CP   E +  SQ +  HCL+  C
Sbjct: 543 SLASDYYCKCPEDYEGKNCSQLKD-HCLITPC 573

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 16/48 (33%)
 Frame = -1

Query: 349 PHHQLLISRY------HSLVLTRSRPHPPQS----------HCLPVPK 254
           PH  L +S+       HSL++TR  PH P S          +CLP+P+
Sbjct: 227 PHLNLSVSKLESWGPVHSLLITRGLPHLPSSEKQQVSFHIPNCLPLPE 274

>CT012_HUMAN (Q9NVP4) Protein C20orf12|
          Length = 579

 Score = 29.3 bits (64), Expect = 5.5
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 340 GDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKRNDEMK 468
           GDGG  GS++ +++ Y+Q + D+  E  + I++ K K   E K
Sbjct: 385 GDGGLCGSRSSWVSDYSQSTSDT-IEKIKRIKNFKTKTFQEKK 426

>VNUA_PRVKA (P33485) Probable nuclear antigen|
          Length = 1733

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 10/82 (12%)
 Frame = -1

Query: 463 SHHCACPSTSESRGGSQYQSHH--------CLVYICSDNGSWTHRVPHHQLLISRYHSLV 308
           SH  + PST+ +R     Q HH              + +G W  R     L  + + SL 
Sbjct: 8   SHRLSLPSTTTTRDHHHQQHHHHPPPPPSRTHFTTITTSGRWLQR-QFPVLTTTVFFSLF 66

Query: 307 LT--RSRPHPPQSHCLPVPKNE 248
           L+     P PPQ H  P P  +
Sbjct: 67  LSFPPHPPRPPQDHHRPTPARD 88

>E41L4_BRARE (O57457) Band 4.1-like protein 4 (Nbl4 protein)|
          Length = 619

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/98 (24%), Positives = 37/98 (37%)
 Frame = +1

Query: 157 SAGSEPHPLHGRDSSLKTVEGNLQAAAAMASRFWGQGXXXXXXXXXXXXXXQGSDSEKSE 336
           S GSE  P H R  +    + N Q      SR                    G+ S  SE
Sbjct: 440 SGGSENEPRHRRGQTADDAQANKQHRRRSRSR--------------------GNTSSGSE 479

Query: 337 AGDGGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDK 450
           + +  R+  K R  ++ + +  DS  +   V+R  K+K
Sbjct: 480 SENSNREHRKKRNRSRQSNEMVDSAPQWEVVLRRQKEK 517

>RELN_MOUSE (Q60841) Reelin precursor (EC 3.4.21.-) (Reeler protein)|
          Length = 3461

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 445  PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 341
            PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3162 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3199

>HEMA_CVMA5 (P31615) Hemagglutinin-esterase precursor (EC 3.1.1.53) (HE) (E3|
           glycoprotein)
          Length = 428

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = -3

Query: 257 QKRDAMAAAACKLPSTVFKLESRPWSG*GSDPAENGE 147
           ++ D M AAAC+LP   F+  S  +SG G+  A +G+
Sbjct: 309 RQSDNMTAAACQLPYCFFRNTSANYSG-GTHDAHHGD 344

>IF38_HUMAN (Q99613) Eukaryotic translation initiation factor 3 subunit 8 (eIF3|
           p110) (eIF3c)
          Length = 913

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
 Frame = +1

Query: 316 SDSEKSEAGD-------GGRDGSKNRYLNKYTQDSDDSDTESHRVIRSLKDKRNDEM 465
           S+SE S +G+       GG  G +   L++     D+ DT+  RV+RS KDKR +E+
Sbjct: 11  SESESSLSGEELVTKPVGGNYGKQPLLLSE-----DEEDTK--RVVRSAKDKRFEEL 60

>AMELY_PANTR (Q861X8) Amelogenin, Y isoform precursor (Fragment)|
          Length = 203

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = -1

Query: 403 HHCLVYICSDNGSWTHRVPHHQLLISRYHSLVLTRSRPHPPQSHCLPVPKNET 245
           HH ++ + S     TH +  H      +H  V+   +P  PQ   +PVP  ++
Sbjct: 77  HHQIIPVVSQQHPLTHTLQSH------HHIPVVPAQQPRVPQQAMMPVPGQQS 123

>RELN_RAT (P58751) Reelin precursor (EC 3.4.21.-)|
          Length = 3462

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -1

Query: 445  PSTSESRGGSQYQSHHCLVYICSDNGSW---THRVPHH 341
            PS+S S G S +Q H   +Y   ++ SW   T ++P H
Sbjct: 3163 PSSSNSIGCSPFQFHEATIYNAVNSSSWKRITIQLPDH 3200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.306    0.125    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,410,230
Number of Sequences: 219361
Number of extensions: 1011802
Number of successful extensions: 3063
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 2150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3030
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)